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Troisi R, Galardo F, Ferraro G, Sica F, Merlino A. Cisplatin Binding to Human Serum Transferrin: A Crystallographic Study. Inorg Chem 2023; 62:675-678. [PMID: 36602395 PMCID: PMC9846693 DOI: 10.1021/acs.inorgchem.2c04206] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
The molecular mechanism of how human serum transferrin (hTF) recognizes cisplatin at the atomic level is still unclear. Here, we report the molecular structure of the adduct formed upon the reaction of hTF with cisplatin. Pt binds the side chain of Met256 (at the N-lobe), without altering the protein overall conformation.
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Affiliation(s)
- Romualdo Troisi
- Department
of Chemical Sciences, University of Naples
Federico II, Complesso Universitario di Monte Sant’Angelo, via Cintia, Naples I-80126, Italy
| | - Francesco Galardo
- Department
of Chemical Sciences, University of Naples
Federico II, Complesso Universitario di Monte Sant’Angelo, via Cintia, Naples I-80126, Italy
| | - Giarita Ferraro
- Department
of Chemical Sciences, University of Naples
Federico II, Complesso Universitario di Monte Sant’Angelo, via Cintia, Naples I-80126, Italy
| | - Filomena Sica
- Department
of Chemical Sciences, University of Naples
Federico II, Complesso Universitario di Monte Sant’Angelo, via Cintia, Naples I-80126, Italy
| | - Antonello Merlino
- Department
of Chemical Sciences, University of Naples
Federico II, Complesso Universitario di Monte Sant’Angelo, via Cintia, Naples I-80126, Italy,
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2
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Lin HJ, James I, Hyer CD, Haderlie CT, Zackrison MJ, Bateman TM, Berg M, Park JS, Daley SA, Zuniga Pina NR, Tseng YJJ, Moody JD, Price JC. Quantifying In Situ Structural Stabilities of Human Blood Plasma Proteins Using a Novel Iodination Protein Stability Assay. J Proteome Res 2022; 21:2920-2935. [PMID: 36356215 PMCID: PMC9724711 DOI: 10.1021/acs.jproteome.2c00323] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2022] [Indexed: 11/12/2022]
Abstract
Many of the diseases that plague society today are driven by a loss of protein quality. One method to quantify protein quality is to measure the protein folding stability (PFS). Here, we present a novel mass spectrometry (MS)-based approach for PFS measurement, iodination protein stability assay (IPSA). IPSA quantifies the PFS by tracking the surface-accessibility differences of tyrosine, histidine, methionine, and cysteine under denaturing conditions. Relative to current methods, IPSA increases protein coverage and granularity to track the PFS changes of a protein along its sequence. To our knowledge, this study is the first time the PFS of human serum proteins has been measured in the context of the blood serum (in situ). We show that IPSA can quantify the PFS differences between different transferrin iron-binding states in near in vivo conditions. We also show that the direction of the denaturation curve reflects the in vivo surface accessibility of the amino acid residue and reproducibly reports a residue-specific PFS. Along with IPSA, we introduce an analysis tool Chalf that provides a simple workflow to calculate the residue-specific PFS. The introduction of IPSA increases the potential to use protein structural stability as a structural quality metric in understanding the etiology and progression of human disease. Data is openly available at Chorusproject.org (project ID 1771).
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Affiliation(s)
- Hsien-Jung
L. Lin
- Department of Chemistry and
Biochemistry, Brigham Young University, Provo, Utah84602, United States
| | - Isabella James
- Department of Chemistry and
Biochemistry, Brigham Young University, Provo, Utah84602, United States
| | - Chad D. Hyer
- Department of Chemistry and
Biochemistry, Brigham Young University, Provo, Utah84602, United States
| | - Connor T. Haderlie
- Department of Chemistry and
Biochemistry, Brigham Young University, Provo, Utah84602, United States
| | - Michael J. Zackrison
- Department of Chemistry and
Biochemistry, Brigham Young University, Provo, Utah84602, United States
| | - Tyler M. Bateman
- Department of Chemistry and
Biochemistry, Brigham Young University, Provo, Utah84602, United States
| | - Monica Berg
- Department of Chemistry and
Biochemistry, Brigham Young University, Provo, Utah84602, United States
| | - Ji-Sun Park
- Department of Chemistry and
Biochemistry, Brigham Young University, Provo, Utah84602, United States
| | - S. Anisha Daley
- Department of Chemistry and
Biochemistry, Brigham Young University, Provo, Utah84602, United States
| | - Nathan R. Zuniga Pina
- Department of Chemistry and
Biochemistry, Brigham Young University, Provo, Utah84602, United States
| | - Yi-Jie J. Tseng
- Department of Chemistry and
Biochemistry, Brigham Young University, Provo, Utah84602, United States
| | - James D. Moody
- Department of Chemistry and
Biochemistry, Brigham Young University, Provo, Utah84602, United States
| | - John C. Price
- Department of Chemistry and
Biochemistry, Brigham Young University, Provo, Utah84602, United States
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3
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Kircheva N, Toshev N, Dudev T. Holo-chromodulin: competition between the native Cr3+ and other biogenic cations (Fe3+, Fe2+, Mg2+, and Zn2+) for the binding sites. Metallomics 2022; 14:6758515. [PMID: 36220150 DOI: 10.1093/mtomcs/mfac082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2022] [Accepted: 09/30/2022] [Indexed: 11/13/2022]
Abstract
Chromodulin is an oligopeptide that has an essential role for the flawless functioning of insulin. Although the precise sequence of the constituent amino acid residues and the 3D structure of the molecule has not yet been deciphered, it is known that chromodulin contains only four amino acids in the ratio of Glu-: Gly: Cys: Asp- = 4: 2: 2: 2. An indispensable part for the integrity of the molecule in its active (holo-) form are four chromium cations (hence the name) in the oxidation state of 3+, positioned in two metal binding sites containing one and three Cr3+ ions. Experimental works provide some hints/clues concerning the structure of the metal centers, although their exact composition, type, and arrangement of metal ligating entities remain enigmatic. In the current study, we endeavor to unveil possible structure(s) of the Cr3+ loaded binding sites by strictly following the evidence provided by the experimental data. Well-calibrated in silico methodology for optimization and evaluation of Gibbs free energies is applied and gives strong premises for reliably deciphering the composition/structure of chromodulin metal binding sites. Additional computations reveal the advantage of choosing Cr3+ over other tri- (Fe3+) and divalent (Fe2+, Mg2+, and Zn2+) biogenic ions for securing maximum stability of the metal-occupied binding sites.
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Affiliation(s)
- Nikoleta Kircheva
- Institute of Optical Materials and Technologies "Acad. J. Malinowski", Bulgarian Academy of Sciences, 1113 Sofia, Bulgaria
| | - Nikolay Toshev
- Faculty of Trade Economics and Commodity Science, Plekhanov Russian University of Economics, 117997 Moscow, Russia
| | - Todor Dudev
- Faculty of Chemistry and Pharmacy, Sofia University "St. Kl. Ohridski", 1164 Sofia, Bulgaria
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4
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Lee H, Weber C, Linscott EB. Many-Body Study of Iron(III)-Bound Human Serum Transferrin. J Phys Chem Lett 2022; 13:4419-4425. [PMID: 35549239 PMCID: PMC9150111 DOI: 10.1021/acs.jpclett.2c00680] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2022] [Accepted: 04/19/2022] [Indexed: 06/15/2023]
Abstract
We present the very first density functional theory and dynamical mean field theory calculations of iron-bound human serum transferrin. Peaks in the optical conductivity at 250, 300, and 450 nm were observed, in line with experimental measurements. Spin multiplet analysis suggests that the ground state is a mixed state with high entropy, indicating the importance of strong electronic correlation in this system's chemistry.
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Affiliation(s)
- Hovan Lee
- Department
of Physics, Faculty of Natural & Mathematical Sciences, King’s College London, London WC2R2LS, U.K.
| | - Cedric Weber
- Department
of Physics, Faculty of Natural & Mathematical Sciences, King’s College London, London WC2R2LS, U.K.
| | - Edward B. Linscott
- Theory
and Simulation of Materials (THEOS), École
Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
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5
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Levina A, Wang B, Lay PA. Urea Gel Electrophoresis in Studies of Conformational Changes of Transferrin on Binding and Transport of Non-Ferric Metal Ions. Gels 2021; 8:19. [PMID: 35049554 PMCID: PMC8774473 DOI: 10.3390/gels8010019] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Revised: 12/19/2021] [Accepted: 12/24/2021] [Indexed: 02/06/2023] Open
Abstract
Transferrin (Tf) is a crucial transporter protein for Fe(III), but its biological role in binding other metal ions and their delivery into cells remain highly controversial. The first systematic exploration of the effect of non-Fe(III) metal ion binding on Tf conformation has been performed by urea-polyacrylamide gel electrophoresis (urea-PAGE), which is commonly used for nucleic acids but rarely for proteins. Closed Tf conformation, similar to that caused by Fe(III)-Tf binding, was formed for In(III), V(III) or Cr(III) binding to Tf. In all these cases, metal distribution between Tf lobes and/or the rate of metal release under acidic conditions differed from that of Fe(III)-Tf. By contrast, Ga(III) and V(IV) did not form closed Tf conformation under urea-PAGE conditions. Apart from Fe(III), only In(III) was able to increase the proportion of closed Tf conformation in whole serum. These results suggest that Tf is unlikely to act as a natural carrier of any metal ion, except Fe(III), into cells but can reduce toxicity of exogenous metal ions by binding them in serum and preventing their entry into cells.
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Affiliation(s)
- Aviva Levina
- School of Chemistry, University of Sydney, Sydney, NSW 2006, Australia;
| | - Boer Wang
- School of Chemistry, University of Sydney, Sydney, NSW 2006, Australia;
| | - Peter A. Lay
- School of Chemistry, University of Sydney, Sydney, NSW 2006, Australia;
- Sydney Analytical, University of Sydney, Sydney, NSW 2006, Australia
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6
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Huang HL, Lin P, Wang H, Huang HH, Wu CH. Ionic Liquid Extraction Behavior of Cr(VI) Absorbed on Humic Acid-Vermiculite. Molecules 2021; 26:molecules26247478. [PMID: 34946560 PMCID: PMC8709350 DOI: 10.3390/molecules26247478] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Revised: 12/07/2021] [Accepted: 12/08/2021] [Indexed: 11/30/2022] Open
Abstract
Cr(VI) can be released into soil as a result of mining, electroplating, and smelting operations. Due to the high toxicity of Cr(VI), its removal is necessary in order to protect ecosystems. Vermiculite is applied in situations where there is a high degree of metal pollution, as it is helpful during the remediation process due to its high cation exchange capacity. The Cr(VI) contained in the vermiculite should be extracted in order to recover it and to reduce the impact on the environment. In this work, adsorption equilibrium data for Cr(VI) in a simulated sorbent for soil remediation (a mixture that included both humic acid (HA) and vermiculite) were a good fit with the Langmuir isotherm model. The simulated sorbent for soil remediation was a favorable sorbent for Cr(VI) when it was in the test soil. An ionic liquid, [C4mim]Cl (1-butyl-3-methylimidazolium chloride), was studied to determine its efficiency in extracting Cr(VI) from the Cr- contaminated simulated sorbent in soil remediation. At 298 K and within 30 min, approximately 33.48 ± 0.79% of Cr(VI) in the simulated sorbent in soil remediation was extracted into [C4mim]Cl. Using FTIR spectroscopy, the absorbance intensities of the bands at 1032 and 1010 cm−1, which were attributed to C-O bond stretching in the polysaccharides of HA, were used to detect the changes in HA in the Cr-contaminated simulated sorbent for soil remediation before and after extraction. The results showed that Cr(VI) that has been absorbed on HA can be extracted into [C4mim]Cl. Using 1H NMR, it was observed that the 1-methylimizadole of [C4mim] Cl played an important role in the extraction of Cr(VI), which bonded with HA on vermiculite and was able to be transformed into the [C4mim]Cl phase.
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7
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Edwards KC, Gannon MW, Frantom PA, Vincent JB. Low-molecular-weight chromium-binding substance (LMWCr) may bind and carry Cr(III) from the endosome. J Inorg Biochem 2021; 223:111555. [PMID: 34315118 DOI: 10.1016/j.jinorgbio.2021.111555] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2021] [Revised: 07/16/2021] [Accepted: 07/16/2021] [Indexed: 10/20/2022]
Abstract
Trivalent chromium has been proposed to be transported in vivo from the bloodstream to the tissues via endocytosis by transferrin (Tf), the major iron transport protein in the blood. While Cr(III) loss from the Tf/Tf receptor complex after acidification to pH 5.5 has recently been shown to be sufficiently rapid to be physiologically relevant, the released Cr(III) still must exit the endosome during the time of the endocytosis cycle (circa 15 min). Cr(III) binds too slowly to small ligands such as citrate or ascorbate, or even EDTA, for such complexes to form and be transported from the endosome, while no trivalent ion transporters are known. However, the apo form of the peptide low-molecular-weight chromium-binding substance (LMWCr) can remove Cr(III) from Cr(III)2-Tf at neutral pH, albeit slowly, and LMWCr is known to be transported from cells after binding Cr(III), although the transporter is not known. LMWCr subsequently carries Cr(III) to the bloodstream ultimately for removal from the body in the urine. The rate of binding of Cr(III) to apoLMWCr was significantly enhanced in the presence of the Tf/Tf receptor complex. These results suggest that apoLMWCr may function to bind Cr(III) released in the endosomes for ultimate removal from the body as part of a Cr(III) detoxification process.
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Affiliation(s)
- Kyle C Edwards
- Department of Chemistry, The University of Alabama, Tuscaloosa, AL 35487-0336, USA
| | - Michael W Gannon
- Department of Chemistry, The University of Alabama, Tuscaloosa, AL 35487-0336, USA
| | - Patrick A Frantom
- Department of Chemistry, The University of Alabama, Tuscaloosa, AL 35487-0336, USA
| | - John B Vincent
- Department of Chemistry, The University of Alabama, Tuscaloosa, AL 35487-0336, USA.
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8
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Benjamín-Rivera JA, Cardona-Rivera AE, Vázquez-Maldonado ÁL, Dones-Lassalle CY, Pabón-Colon HL, Rodríguez-Rivera HM, Rodríguez I, González-Espiet JC, Pazol J, Pérez-Ríos JD, Catala-Torres JF, Carrasquillo Rivera M, De Jesus-Soto MG, Cordero-Virella NA, Cruz-Maldonado PM, González-Pagan P, Hernández-Ríos R, Gaur K, Loza-Rosas SA, Tinoco AD. Exploring Serum Transferrin Regulation of Nonferric Metal Therapeutic Function and Toxicity. INORGANICS 2020; 8:48. [PMID: 36844373 PMCID: PMC9957567 DOI: 10.3390/inorganics8090048] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
Abstract
Serum transferrin (sTf) plays a pivotal role in regulating iron biodistribution and homeostasis within the body. The molecular details of sTf Fe(III) binding blood transport, and cellular delivery through transferrin receptor-mediated endocytosis are generally well-understood. Emerging interest exists in exploring sTf complexation of nonferric metals as it facilitates the therapeutic potential and toxicity of several of them. This review explores recent X-ray structural and physiologically relevant metal speciation studies to understand how sTf partakes in the bioactivity of key non-redox active hard Lewis acidic metals. It challenges preconceived notions of sTf structure function correlations that were based exclusively on the Fe(III) model by revealing distinct coordination modalities that nonferric metal ions can adopt and different modes of binding to metal-free and Fe(III)-bound sTf that can directly influence how they enter into cells and, ultimately, how they may impact human health. This knowledge informs on biomedical strategies to engineer sTf as a delivery vehicle for metal-based diagnostic and therapeutic agents in the cancer field. It is the intention of this work to open new avenues for characterizing the functionality and medical utility of nonferric-bound sTf and to expand the significance of this protein in the context of bioinorganic chemistry.
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Affiliation(s)
- Josué A. Benjamín-Rivera
- Department of Chemistry, University of Puerto Rico, Río Piedras Campus, Río Piedras, PR 00931, USA)
| | - Andrés E. Cardona-Rivera
- Department of Chemistry, University of Puerto Rico, Río Piedras Campus, Río Piedras, PR 00931, USA)
| | | | | | - Héctor L. Pabón-Colon
- Department of Chemistry, University of Puerto Rico, Río Piedras Campus, Río Piedras, PR 00931, USA)
| | | | - Israel Rodríguez
- Department of Chemistry, University of Puerto Rico, Río Piedras Campus, Río Piedras, PR 00931, USA)
| | - Jean C. González-Espiet
- Department of Chemistry, University of Puerto Rico, Río Piedras Campus, Río Piedras, PR 00931, USA)
| | - Jessika Pazol
- Department of Chemistry, University of Puerto Rico, Río Piedras Campus, Río Piedras, PR 00931, USA)
| | - Jobaniel D. Pérez-Ríos
- Department of Chemistry, University of Puerto Rico, Río Piedras Campus, Río Piedras, PR 00931, USA)
| | - José F. Catala-Torres
- Department of Chemistry, University of Puerto Rico, Río Piedras Campus, Río Piedras, PR 00931, USA)
| | | | - Michael G. De Jesus-Soto
- Department of Chemistry, University of Puerto Rico, Río Piedras Campus, Río Piedras, PR 00931, USA)
| | | | - Paola M. Cruz-Maldonado
- Department of Chemistry, University of Puerto Rico, Río Piedras Campus, Río Piedras, PR 00931, USA)
| | - Patricia González-Pagan
- Department of Chemistry, University of Puerto Rico, Río Piedras Campus, Río Piedras, PR 00931, USA)
| | - Raul Hernández-Ríos
- Department of Chemistry, University of Puerto Rico, Río Piedras Campus, Río Piedras, PR 00931, USA)
| | - Kavita Gaur
- Department of Chemistry, University of Puerto Rico, Río Piedras Campus, Río Piedras, PR 00931, USA)
| | - Sergio A. Loza-Rosas
- Departamento de Química y Bioquímica, Facultad de Ciencias e Ingeniería, Universidad de Boyacá, Tunja 150003, Colombia
| | - Arthur D. Tinoco
- Department of Chemistry, University of Puerto Rico, Río Piedras Campus, Río Piedras, PR 00931, USA)
- Correspondence: ; Tel.: +1-939-319-9701
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