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Xiao Q, Wang L, Chen SQ, Zheng CY, Lu YY, Xu YJ. Gut Microbiome Composition of the Fire Ant Solenopsis invicta: an Integrated Analysis of Host Genotype and Geographical Distribution. Microbiol Spectr 2023; 11:e0358522. [PMID: 36602316 PMCID: PMC9927370 DOI: 10.1128/spectrum.03585-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Accepted: 12/01/2022] [Indexed: 01/06/2023] Open
Abstract
Gut symbiotic bacteria are known to be closely related to insect development, nutrient metabolism, and disease resistance traits, but the most important factors leading to changes in these communities have not been well clarified. To address this, we examined the associations between the gut symbiotic bacteria and the host genotype and geographical distribution of Solenopsis invicta in China, where it is invasive and has spread primarily by human-mediated dispersal. Thirty-two phyla were detected in the gut symbiotic bacteria of S. invicta. Proteobacteria were the most dominant group among the gut symbiotic bacteria. Furthermore, the Bray-Curtis dissimilarity matrices of the gut symbiotic bacteria were significantly positively correlated with the geographical distance between the host ant colonies, but this relationship was affected by the social form. The distance between monogyne colonies had a significant effect on the Bray-Curtis dissimilarity matrices of gut symbiotic bacteria, but the distance between polygyne colonies did not. Moreover, the Bray-Curtis dissimilarity matrices were positively correlated with Nei's genetic distance of the host but were not correlated with the COI-based genetic distance. This study provides a scientific basis for further understanding the ecological adaptability of red imported fire ants during invasion and dispersal. IMPORTANCE We demonstrated that gut microbiota composition and diversity varied among populations. These among-population differences were associated with host genotype and geographical distribution. Our results suggested that population-level differences in S. invicta gut microbiota may depend more on environmental factors than on host genotype.
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Affiliation(s)
- Qian Xiao
- Red Imported Fire Ant Research Center, South China Agricultural University, Guangzhou, China
| | - Lei Wang
- Red Imported Fire Ant Research Center, South China Agricultural University, Guangzhou, China
| | - Si-Qi Chen
- Red Imported Fire Ant Research Center, South China Agricultural University, Guangzhou, China
| | - Chun-Yan Zheng
- Red Imported Fire Ant Research Center, South China Agricultural University, Guangzhou, China
| | - Yong-Yue Lu
- Red Imported Fire Ant Research Center, South China Agricultural University, Guangzhou, China
| | - Yi-Juan Xu
- Red Imported Fire Ant Research Center, South China Agricultural University, Guangzhou, China
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Avila-Arias H, Scharf ME, Turco RF, Richmond DS. Soil Environments Influence Gut Prokaryotic Communities in the Larvae of the Invasive Japanese Beetle Popillia japonica Newman. Front Microbiol 2022; 13:854513. [PMID: 35572692 PMCID: PMC9094118 DOI: 10.3389/fmicb.2022.854513] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2022] [Accepted: 03/28/2022] [Indexed: 11/13/2022] Open
Abstract
Invasive scarab beetles, like the Japanese beetle Popillia japonica Newman (JB), spend most of their lives as larvae feeding in the soil matrix. Despite the potential importance of the larval gut microbial community in driving the behavior, physiology, and nutritional ecology of this invasive insect, the role of soil biological and physicochemical characteristics in shaping this community are relatively unknown. Our objectives were to (1) characterize the degree to which larval gut microbial communities are environmentally acquired, (2) examine the combined effects of the gut region (i.e., midgut, hindgut) and local soil environments on gut microbial communities, and (3) search for soil physicochemical correlates that could be useful in future studies aimed at characterizing gut microbial community variation in soil-dwelling scarabs. Gut communities from neonates that were never in contact with the soil were different from gut communities of third instar larvae collected from the field, with neonate gut communities being significantly less rich and diverse. The influence of compartment (soil, midgut, or hindgut) on prokaryotic α- and β-diversity varied with location, suggesting that JB larval gut communities are at least partially shaped by the local environment even though the influence of compartment was more pronounced. Midgut microbiota contained transient communities that varied with the surrounding soil environment whereas hindgut microbiota was more conserved. Prokaryotic communities in the hindgut clustered separately from those of soil and midgut, which displayed greater interspersion in ordination space. Soil cation exchange capacity, organic matter, water holding capacity, and texture were moderately correlated (≥29%) with gut prokaryotic microbial composition, especially within the midgut. Findings suggest that microbial communities associated with the JB gut are partially a function of adaptation to local soil environments. However, conditions within each gut compartment appear to shape those communities in transit through the alimentary canal.
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Affiliation(s)
- Helena Avila-Arias
- Soil Insect Ecology Laboratory, Department of Entomology, Purdue University, West Lafayette, IN, United States
| | - Michael E Scharf
- Entomology and Nematology Department, University of Florida, Gainesville, FL, United States
| | - Ronald F Turco
- Department of Agronomy, Purdue University, West Lafayette, IN, United States
| | - Douglas S Richmond
- Soil Insect Ecology Laboratory, Department of Entomology, Purdue University, West Lafayette, IN, United States
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Ramalho MDO, Martins C, Morini MSC, Bueno OC. What Can the Bacterial Community of Atta sexdens (Linnaeus, 1758) Tell Us about the Habitats in Which This Ant Species Evolves? INSECTS 2020; 11:E332. [PMID: 32481532 PMCID: PMC7349130 DOI: 10.3390/insects11060332] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/05/2020] [Revised: 05/19/2020] [Accepted: 05/22/2020] [Indexed: 12/22/2022]
Abstract
Studies of bacterial communities can reveal the evolutionary significance of symbiotic interactions between hosts and their associated bacteria, as well as identify environmental factors that may influence host biology. Atta sexdens is an ant species native to Brazil that can act as an agricultural pest due to its intense behavior of cutting plants. Despite being extensively studied, certain aspects of the general biology of this species remain unclear, such as the evolutionary implications of the symbiotic relationships it forms with bacteria. Using high-throughput amplicon sequencing of 16S rRNA genes, we compared for the first time the bacterial community of A. sexdens (whole ant workers) populations according to the habitat (natural versus agricultural) and geographical location. Our results revealed that the bacterial community associated with A. sexdens is mainly influenced by the geographical location, and secondarily by the differences in habitat. Also, the bacterial community associated with citrus differed significantly from the other communities due to the presence of Tsukamurella. In conclusion, our study suggests that environmental shifts may influence the bacterial diversity found in A. sexdens.
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Affiliation(s)
- Manuela de Oliveira Ramalho
- Centro de Estudos de Insetos Sociais—CEIS, Instituto de Biociências, Universidade Estadual Paulista, UNESP, Campus Rio Claro, Avenida 24A, 1515, Bela Vista, Rio Claro 13506-900, SP, Brazil;
- Department of Entomology, Cornell University, 129 Garden Ave, Ithaca, NY 14850, USA
| | - Cintia Martins
- Campus Ministro Reis Velloso, Universidade Federal do Piauí, Av. São Sebastião, 2819, Parnaíba, Piauí 64202-020, Brazil;
| | - Maria Santina Castro Morini
- Núcleo de Ciências Ambientais, Universidade de Mogi das Cruzes, Av. Dr. Cândido Xavier de Almeida e Souza, 200, Centro Cívico, Mogi das Cruzes 08780-911, SP, Brazil;
| | - Odair Correa Bueno
- Centro de Estudos de Insetos Sociais—CEIS, Instituto de Biociências, Universidade Estadual Paulista, UNESP, Campus Rio Claro, Avenida 24A, 1515, Bela Vista, Rio Claro 13506-900, SP, Brazil;
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Martins C, Moreau CS. Influence of host phylogeny, geographical location and seed harvesting diet on the bacterial community of globally distributed Pheidole ants. PeerJ 2020; 8:e8492. [PMID: 32117618 PMCID: PMC7006521 DOI: 10.7717/peerj.8492] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2018] [Accepted: 12/30/2019] [Indexed: 11/20/2022] Open
Abstract
The presence of symbiotic relationships between organisms is a common phenomenon found across the tree of life. In particular, the association of bacterial symbionts with ants is an active area of study. This close relationship between ants and microbes can significantly impact host biology and is also considered one of the driving forces in ant evolution and diversification. Diet flexibility of ants may explain the evolutionary success of the group, which may be achieved by the presence of endosymbionts that aid in nutrition acquisition from a variety of food sources. With more than 1,140 species, ants from the genus Pheidole have a worldwide distribution and an important role in harvesting seeds; this behavior is believed to be a possible key innovation leading to the diversification of this group. This is the first study to investigate the bacterial community associated with Pheidole using next generation sequencing (NGS) to explore the influences of host phylogeny, geographic location and food preference in shaping the microbial community. In addition, we explore if there are any microbiota signatures related to granivory. We identified Proteobacteria and Firmicutes as the major phyla associated with these ants. The core microbiome in Pheidole (those found in >50% of all samples) was composed of 14 ASVs and the most prevalent are family Burkholderiaceae and the genera Acinetobacter, Streptococcus, Staphylococcus, Cloacibacterium and Ralstonia. We found that geographical location and food resource may influence the bacterial community of Pheidole ants. These results demonstrate that Pheidole has a relatively stable microbiota across species, which suggests the bacterial community may serve a generalized function in this group.
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Affiliation(s)
- Cíntia Martins
- Department of Biological Science, Campus Ministro Reis Velloso, Universidade Federal do Piauí, Parnaíba, Piauí, Brazil.,Department of Science and Education, Field Museum of Natural History, Chicago, IL, United States of America
| | - Corrie S Moreau
- Department of Science and Education, Field Museum of Natural History, Chicago, IL, United States of America.,Departments of Entomology and Ecology & Evolutionary Biology, Cornell University, Ithaca, NY, United States of America
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Dang V, Cohanim AB, Fontana S, Privman E, Wang J. Has gene expression neofunctionalization in the fire ant antennae contributed to queen discrimination behavior? Ecol Evol 2019; 9:12754-12766. [PMID: 31788211 PMCID: PMC6875580 DOI: 10.1002/ece3.5748] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2019] [Revised: 09/18/2019] [Accepted: 09/23/2019] [Indexed: 12/12/2022] Open
Abstract
Queen discrimination behavior in the fire ant Solenopsis invicta maintains its two types of societies: colonies with one (monogyne) or many (polygyne) queens, yet the underlying genetic mechanism is poorly understood. This behavior is controlled by two supergene alleles, SB and Sb, with ~600 genes. Polygyne workers, having either the SB/SB or SB/Sb genotype, accept additional SB/Sb queens into their colonies but kill SB/SB queens. In contrast, monogyne workers, all SB/SB, reject all additional queens regardless of genotype. Because the SB and Sb alleles have suppressed recombination, determining which genes within the supergene mediate this differential worker behavior is difficult. We hypothesized that the alternate worker genotypes sense queens differently because of the evolution of differential expression of key genes in their main sensory organ, the antennae. To identify such genes, we sequenced RNA from four replicates of pooled antennae from three classes of workers: monogyne SB/SB, polygyne SB/SB, and polygyne SB/Sb. We identified 81 differentially expressed protein-coding genes with 13 encoding potential chemical metabolism or perception proteins. We focused on the two odorant perception genes: an odorant receptor SiOR463 and an odorant-binding protein SiOBP12. We found that SiOR463 has been lost in the Sb genome. In contrast, SiOBP12 has an Sb-specific duplication, SiOBP12b', which is expressed in the SB/Sb worker antennae, while both paralogs are expressed in the body. Comparisons with another fire ant species revealed that SiOBP12b' antennal expression is specific to S. invicta and suggests that queen discrimination may have evolved, in part, through expression neofunctionalization.
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Affiliation(s)
- Viet‐Dai Dang
- Biodiversity Research CenterAcademia SinicaTaipeiTaiwan
- Biodiversity Taiwan International Graduate Program, Biodiversity Research CenterAcademia SinicaTaipeiTaiwan
- Department of Life ScienceNational Taiwan Normal UniversityTaipeiTaiwan
- Department of ZoologySouthern Institute of EcologyVietnam Academy of Science and TechnologyHochiminhVietnam
| | - Amir B. Cohanim
- Department of Evolutionary and Environmental BiologyInstitute of EvolutionUniversity of HaifaHaifaIsrael
| | - Silvia Fontana
- Biodiversity Research CenterAcademia SinicaTaipeiTaiwan
- Biodiversity Taiwan International Graduate Program, Biodiversity Research CenterAcademia SinicaTaipeiTaiwan
- Department of Life ScienceNational Taiwan Normal UniversityTaipeiTaiwan
| | - Eyal Privman
- Department of Evolutionary and Environmental BiologyInstitute of EvolutionUniversity of HaifaHaifaIsrael
| | - John Wang
- Biodiversity Research CenterAcademia SinicaTaipeiTaiwan
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6
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Xu M, Zhu Q, Wu J, He Y, Yang G, Zhang X, Li L, Yu X, Peng H, Wang L. Grey relational analysis for evaluating the effects of different rates of wine lees-derived biochar application on a plant-soil system with multi-metal contamination. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2018; 25:6990-7001. [PMID: 29273988 DOI: 10.1007/s11356-017-1048-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2017] [Accepted: 12/13/2017] [Indexed: 06/07/2023]
Abstract
In this study, grey relational analysis (GRA) was used to investigate the effects of different application rates of wine lees-derived biochar on a plant-soil system with multi-metal contamination. A pot experiment was conducted to determine rice growth in multi-metal-contaminated soil amended with samples of wine lees-derived biochar, and 47 indicators (including soil properties, microbial activity, and plant physiology) were selected as evaluation indexes to assess the plant-soil system. The results indicated that higher wine lees-derived biochar application rates (2% W/W) were favorable for soil fertility, the bioconcentration factor (BF), and the mobility factor (MF, %) (with the exception of Cr, Zn, and Hg), but an application of 1% produced the highest plant growth, enzymatic activities, and bacterial diversity. The richness of the bacterial communities was reduced in the soil amended with the wine lees-derived biochar. According to the GRA assessment, the 1% application rate of wine lees-derived biochar was more suitable for restoring the holistic plant-soil system than were the application rates of 0, 0.5, and 2% (W/W). Furthermore, this study shows that GRA is a useful method for evaluating plant-soil systems.
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Affiliation(s)
- Min Xu
- College of Environmental science, Sichuan Agricultural University, 611130, Chengdu, People's Republic of China
| | - Qihong Zhu
- Chongqing Key Laboratory of Environmental Materials and Remediation Technologies, 402160, Chongqing, People's Republic of China
| | - Jun Wu
- College of Environmental science, Sichuan Agricultural University, 611130, Chengdu, People's Republic of China.
| | - Yan He
- College of Environmental science, Sichuan Agricultural University, 611130, Chengdu, People's Republic of China
| | - Gang Yang
- College of Environmental science, Sichuan Agricultural University, 611130, Chengdu, People's Republic of China
| | - Xiaohong Zhang
- College of Environmental science, Sichuan Agricultural University, 611130, Chengdu, People's Republic of China
| | - Li Li
- College of Environmental science, Sichuan Agricultural University, 611130, Chengdu, People's Republic of China
| | - Xiaoyu Yu
- College of Environmental science, Sichuan Agricultural University, 611130, Chengdu, People's Republic of China
| | - Hong Peng
- College of Environmental science, Sichuan Agricultural University, 611130, Chengdu, People's Republic of China
| | - Lilin Wang
- College of Environmental science, Sichuan Agricultural University, 611130, Chengdu, People's Republic of China
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7
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Zhukova M, Sapountzis P, Schiøtt M, Boomsma JJ. Diversity and Transmission of Gut Bacteria in Atta and Acromyrmex Leaf-Cutting Ants during Development. Front Microbiol 2017; 8:1942. [PMID: 29067008 PMCID: PMC5641371 DOI: 10.3389/fmicb.2017.01942] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2017] [Accepted: 09/21/2017] [Indexed: 11/28/2022] Open
Abstract
The social Hymenoptera have distinct larval and adult stages separated by metamorphosis, which implies striking remodeling of external and internal body structures during the pupal stage. This imposes challenges to gut symbionts as existing cultures are lost and may or may not need to be replaced. To elucidate the extent to which metamorphosis interrupts associations between bacteria and hosts, we analyzed changes in gut microbiota during development and traced the transmission routes of dominant symbionts from the egg to adult stage in the leaf-cutting ants Acromyrmex echinatior and Atta cephalotes, which are both important functional herbivores in the New World tropics. Bacterial density remained similar across the developmental stages of Acromyrmex, but Atta brood had very low bacterial prevalences suggesting that bacterial gut symbionts are not actively maintained. We found that Wolbachia was the absolute dominant bacterial species across developmental stages in Acromyrmex and we confirmed that Atta lacks Wolbachia also in the immature stages, and had mostly Mollicutes bacteria in the adult worker guts. Wolbachia in Acromyrmex appeared to be transovarially transmitted similar to transmission in solitary insects. In contrast, Mollicutes were socially transmitted from old workers to newly emerged callows. We found that larval and pupal guts of both ant species contained Pseudomonas and Enterobacter bacteria that are also found in fungus gardens, but hardly or not in adult workers, suggesting they are beneficial only for larval growth and development. Our results reveal that transmission pathways for bacterial symbionts may be very different both between developmental stages and between sister genera and that identifying the mechanisms of bacterial acquisition and loss will be important to clarify their putative mutualistic functions.
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Affiliation(s)
- Mariya Zhukova
- Centre for Social Evolution, Department of Biology, University of Copenhagen, Copenhagen, Denmark
| | - Panagiotis Sapountzis
- Centre for Social Evolution, Department of Biology, University of Copenhagen, Copenhagen, Denmark
| | - Morten Schiøtt
- Centre for Social Evolution, Department of Biology, University of Copenhagen, Copenhagen, Denmark
| | - Jacobus J Boomsma
- Centre for Social Evolution, Department of Biology, University of Copenhagen, Copenhagen, Denmark
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8
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Sanders JG, Łukasik P, Frederickson ME, Russell JA, Koga R, Knight R, Pierce NE. Dramatic Differences in Gut Bacterial Densities Correlate with Diet and Habitat in Rainforest Ants. Integr Comp Biol 2017; 57:705-722. [DOI: 10.1093/icb/icx088] [Citation(s) in RCA: 54] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
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9
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Gupta AK, Rastogi G, Nayduch D, Sawant SS, Bhonde RR, Shouche YS. Molecular phylogenetic profiling of gut-associated bacteria in larvae and adults of flesh flies. MEDICAL AND VETERINARY ENTOMOLOGY 2014; 28:345-354. [PMID: 24805263 DOI: 10.1111/mve.12054] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2013] [Revised: 12/10/2013] [Accepted: 12/11/2013] [Indexed: 06/03/2023]
Abstract
Flesh flies of the genus Sarcophaga (Diptera: Sarcophagidae) are carrion-breeding, necrophagous insects important in medical and veterinary entomology as potential transmitters of pathogens to humans and animals. Our aim was to analyse the diversity of gut-associated bacteria in wild-caught larvae and adult flesh flies using culture-dependent and culture-independent methods. Analysis of 16S rRNA gene sequences from cultured isolates and clone libraries revealed bacteria affiliated to Proteobacteria, Actinobacteria, Firmicutes and Bacteroidetes in the guts of larval and adult flesh flies. Bacteria cultured from larval and adult flesh fly guts belonged to the genera Acinetobacter, Bacillus, Budvicia, Citrobacter, Dermacoccus, Enterococcus, Ignatzschineria, Lysinibacillus, Myroides, Pasteurella, Proteus, Providencia and Staphylococcus. Phylogenetic analysis showed clone sequences of the genera Aeromonas, Bacillus, Bradyrhizobium, Citrobacter, Clostridium, Corynebacterium, Ignatzschineria, Klebsiella, Pantoea, Propionibacterium, Proteus, Providencia, Serratia, Sporosarcina, Weissella and Wohlfahrtiimonas. Species of clinically significant genera such as Ignatzschineria and Wohlfahrtiimonas spp. were detected in both larvae and adult flesh flies. Sequence analysis of 16S rRNA gene libraries supported culture-based results and revealed the presence of additional bacterial taxa. This study determined the diversity of gut microbiota in flesh flies, which will bolster the ability to assess microbiological risk associated with the presence of these flies. The present data thereby establish a platform for a much larger study.
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Affiliation(s)
- A K Gupta
- Molecular Biology Unit, National Centre for Cell Science, Pune, Maharashtra, India
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10
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He H, Wei C, Wheeler DE. The gut bacterial communities associated with lab-raised and field-collected ants of Camponotus fragilis (Formicidae: Formicinae). Curr Microbiol 2014; 69:292-302. [PMID: 24748441 DOI: 10.1007/s00284-014-0586-8] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2014] [Accepted: 02/20/2014] [Indexed: 10/25/2022]
Abstract
Camponotus is the second largest ant genus and known to harbor the primary endosymbiotic bacteria of the genus Blochmannia. However, little is known about the effect of diet and environment changes on the gut bacterial communities of these ants. We investigated the intestinal bacterial communities in the lab-raised and field-collected ants of Camponotus fragilis which is found in the southwestern United States and northern reaches of Mexico. We determined the difference of gut bacterial composition and distribution among the crop, midgut, and hindgut of the two types of colonies. Number of bacterial species varied with the methods of detection and the source of the ants. Lab-raised ants yielded 12 and 11 species using classical microbial culture methods and small-subunit rRNA genes (16S rRNAs) polymerase chain reaction-restriction fragment-length polymorphism analysis, respectively. Field-collected ants yielded just 4 and 1-3 species using the same methods. Most gut bacterial species from the lab-raised ants were unevenly distributed among the crop, midgut, and hindgut, and each section had its own dominant bacterial species. Acetobacter was the prominent bacteria group in crop, accounting for about 55 % of the crop clone library. Blochmannia was the dominant species in midgut, nearly reaching 90 % of the midgut clone library. Pseudomonas aeruginosa dominated the hindgut, accounting for over 98 % of the hindgut clone library. P. aeruginosa was the only species common to all three sections. A comparison between lab-raised and field-collected ants, and comparison with other species, shows that gut bacterial communities vary with local environment and diet. The bacterial species identified here were most likely commensals with little effect on their hosts or mild pathogens deleterious to colony health.
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Affiliation(s)
- Hong He
- College of Forestry, Northwest A&F University, Yangling, 712100, Shaanxi, China,
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11
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Hu Y, Łukasik P, Moreau CS, Russell JA. Correlates of gut community composition across an ant species (Cephalotes varians) elucidate causes and consequences of symbiotic variability. Mol Ecol 2013; 23:1284-1300. [PMID: 24286170 DOI: 10.1111/mec.12607] [Citation(s) in RCA: 72] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2013] [Revised: 11/19/2013] [Accepted: 11/20/2013] [Indexed: 12/27/2022]
Abstract
Insect guts are often colonized by multispecies microbial communities that play integral roles in nutrition, digestion and defence. Community composition can differ across host species with increasing dietary and genetic divergence, yet gut microbiota can also vary between conspecific hosts and across an individual's lifespan. Through exploration of such intraspecific variation and its correlates, molecular profiling of microbial communities can generate and test hypotheses on the causes and consequences of symbioses. In this study, we used 454 pyrosequencing and TRFLP to achieve these goals in an herbivorous ant, Cephalotes varians, exploring variation in bacterial communities across colonies, populations and workers reared on different diets. C. varians bacterial communities were dominated by 16 core species present in over two-thirds of the sampled colonies. Core species comprised multiple genotypes, or strains and hailed from ant-specific clades containing relatives from other Cephalotes species. Yet three were detected in environmental samples, suggesting the potential for environmental acquisition. In spite of their prevalence and long-standing relationships with Cephalotes ants, the relative abundance and genotypic composition of core species varied across colonies. Diet-induced plasticity is a likely cause, but only pollen-based diets had consistent effects, altering the abundance of two types of bacteria. Additional factors, such as host age, genetics, chance or natural selection, must therefore shape natural variation. Future studies on these possibilities and on bacterial contributions to the use of pollen, a widespread food source across Cephalotes, will be important steps in developing C. varians as a model for studying widespread social insect-bacteria symbioses.
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Affiliation(s)
- Yi Hu
- Department of Biology, Drexel University, Philadelphia, PA, 19104, USA
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12
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Russell JA, Weldon S, Smith AH, Kim KL, Hu Y, Łukasik P, Doll S, Anastopoulos I, Novin M, Oliver KM. Uncovering symbiont-driven genetic diversity across North American pea aphids. Mol Ecol 2013; 22:2045-59. [DOI: 10.1111/mec.12211] [Citation(s) in RCA: 160] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2012] [Revised: 12/04/2012] [Accepted: 12/11/2012] [Indexed: 12/20/2022]
Affiliation(s)
- Jacob A. Russell
- Department of Biology; Drexel University; 3245 Chestnut St Philadelphia PA 19104 USA
| | - Stephanie Weldon
- Department of Entomology; University of Georgia; 413 Biological Sciences Building Athens GA 30602 USA
| | - Andrew H. Smith
- Department of Biology; Drexel University; 3245 Chestnut St Philadelphia PA 19104 USA
| | - Kyungsun L. Kim
- Department of Entomology; University of Georgia; 413 Biological Sciences Building Athens GA 30602 USA
| | - Yi Hu
- Department of Biology; Drexel University; 3245 Chestnut St Philadelphia PA 19104 USA
| | - Piotr Łukasik
- Department of Biology; Drexel University; 3245 Chestnut St Philadelphia PA 19104 USA
| | - Steven Doll
- Department of Biology; Drexel University; 3245 Chestnut St Philadelphia PA 19104 USA
| | - Ioannis Anastopoulos
- Department of Biology; Drexel University; 3245 Chestnut St Philadelphia PA 19104 USA
| | - Matthew Novin
- Department of Biology; Drexel University; 3245 Chestnut St Philadelphia PA 19104 USA
| | - Kerry M. Oliver
- Department of Entomology; University of Georgia; 413 Biological Sciences Building Athens GA 30602 USA
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Li X, Nan X, Wei C, He H. The gut bacteria associated with Camponotus japonicus Mayr with culture-dependent and DGGE methods. Curr Microbiol 2012; 65:610-6. [PMID: 22878556 DOI: 10.1007/s00284-012-0197-1] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2012] [Accepted: 07/07/2012] [Indexed: 10/28/2022]
Abstract
The bacterial composition and distribution in the different gut regions of Camponotus japonicus were investigated using both culture-dependent method and culture-independent method of polymerase chain reaction and denaturing gradient gel electrophoresis (PCR-DGGE). Five different bacterial strains were isolated using culture-dependent method, and they all belong to the phylum Firmicutes, including three genera of bacteria Bacillus, Paenibacillus, and Enterococcus. Bacillus cereus and Enterococcus mundtii were found in the midgut; Paenibacillus sp. was isolated from the hindgut; and the other two Bacillus spp. were isolated from the crop. Twelve distinct DGGE bands were found using PCR-DGGE method, and their sequences blasting analysis shows that they are members of the Proteobacteria and the Firmicutes, respectively, including three genera (Pseudomonas, Candidatus Blochmannia, Fructobacillus) and one uncultured bacterium, in which Pseudomonas was the most dominant bacteria group in all the three gut regions. According to the DGGE profile, the three gut regions had very similar gut communities, and all the DGGE bands were presented in the midgut and hindgut, while just two bands representing Blochmannia were not present in the crop. The results of our study indicate that the gut of C. japonicus harbors several other bacteria besides the obligate endosymbionts Blochmannia, and more work should be carried on to verify if they are common in the guts of other Camponotus ants.
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Affiliation(s)
- Xiaoping Li
- College of Forestry, Northwest A&F University, Yangling, Xianyang, Shaanxi, China
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14
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Abstract
Ants are quite possibly the most successful insects on Earth, with an estimated 10,000 species worldwide, making up at least a third of the global insect biomass, and comprising several times the biomass of all land vertebrates combined. Ant species have diverse trophic habits, including herbivory, hunting/gathering, scavenging and predation and are distributed in diverse habitats, performing a variety of important ecosystem functions. Often they exert these functions while engaging in symbiotic associations with other insects, plants or microbes; however, remarkably little work has focused on the potential contribution of the ants' gut symbionts. This issue of Molecular Ecology contains a study by Anderson et al. (2012), who take a comparative approach to explore the link between trophic levels and ant microbiomes, specifically, to address three main questions: (i) Do closely related herbivorous ants share similar bacterial communities? (ii) Do species of predatory ants share similar bacterial communities? (iii) Do distantly related herbivorous ants tend to share similar bacterial communities? By doing so, the authors demonstrate that ants with similar trophic habits appear to have relatively conserved gut microbiomes, suggesting symbiont functions that directly relate to dietary preference of the ant host. These findings suggest an ecological role of gut symbionts in ants, for example, in metabolism and/or protection, and the comparative approach taken supports a model of co-evolution between ant species and specific core symbiont microbiomes. This study, thereby, highlights the omnipresence and importance of gut symbioses-also in the Hymenoptera-and suggests that these hitherto overlooked microbes likely have contributed to the ecological success of the ants.
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Affiliation(s)
- Michael Poulsen
- Centre for Social Evolution, Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Universitetsparken 15, 2100 Copenhagen East, Denmark.
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15
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Anderson KE, Russell JA, Moreau CS, Kautz S, Sullam KE, Hu Y, Basinger U, Mott BM, Buck N, Wheeler DE. Highly similar microbial communities are shared among related and trophically similar ant species. Mol Ecol 2012; 21:2282-96. [PMID: 22276952 DOI: 10.1111/j.1365-294x.2011.05464.x] [Citation(s) in RCA: 117] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Ants dominate many terrestrial ecosystems, yet we know little about their nutritional physiology and ecology. While traditionally viewed as predators and scavengers, recent isotopic studies revealed that many dominant ant species are functional herbivores. As with other insects with nitrogen-poor diets, it is hypothesized that these ants rely on symbiotic bacteria for nutritional supplementation. In this study, we used cloning and 16S sequencing to further characterize the bacterial flora of several herbivorous ants, while also examining the beta diversity of bacterial communities within and between ant species from different trophic levels. Through estimating phylogenetic overlap between these communities, we tested the hypothesis that ecologically or phylogenetically similar groups of ants harbor similar microbial flora. Our findings reveal: (i) clear differences in bacterial communities harbored by predatory and herbivorous ants; (ii) notable similarities among communities from distantly related herbivorous ants and (iii) similar communities shared by different predatory army ant species. Focusing on one herbivorous ant tribe, the Cephalotini, we detected five major bacterial taxa that likely represent the core microbiota. Metabolic functions of bacterial relatives suggest that these microbes may play roles in fixing, recycling, or upgrading nitrogen. Overall, our findings reveal that similar microbial communities are harbored by ants from similar trophic niches and, to a greater extent, by related ants from the same colonies, species, genera, and tribes. These trends hint at coevolved histories between ants and microbes, suggesting new possibilities for roles of bacteria in the evolution of both herbivores and carnivores from the ant family Formicidae.
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Affiliation(s)
- Kirk E Anderson
- Department of Entomology, University of Arizona, Tucson, AZ 85721, USA.
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16
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He H, Chen Y, Zhang Y, Wei C. Bacteria associated with gut lumen of Camponotus japonicus Mayr. ENVIRONMENTAL ENTOMOLOGY 2011; 40:1405-1409. [PMID: 22217755 DOI: 10.1603/en11157] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Camponotus ants harbor the obligate intracellular endosymbiont Blochmannia in their midgut bacteriocytes, but little is known about intestinal bacteria living in the gut lumen. In this paper we reported the results of a survey of the intestinal microflora of Camponotus japonicus Mayr based on small-subunit rRNA genes (16S rRNAs) polymerase chain reaction (PCR)-restriction fragment-length polymorphism analysis of worker guts. From 107 clones, 11 different restriction fragment-length polymorphism profiles were identified, and sequences blasting analysis found these represent four types of bacteria. Most (91.6%) of the clones were "Candidatus Blochmannia", the obligate endosymbionts of Camponotus ants, and 6.5% of the clones were "Candidatus Serratia symbiotica", a secondary endosymbiont of aphids; the remaining 2% clones were Fructobacillus fructosus and uncultured Burkholderiales bacterium, respectively. These results show that the diversity of gut bacteria in C. japonicus was low. "Candidatus Serratia symbiotica" was identified from Camponotus ants for the first time, an interesting result because Blochmannia's closest bacterial relative is also in the genus Serratia. This discovery supports the scenario that consumption of aphid honeydew or tissue provides an initial step in the evolution of an advanced symbiosis, and suggests that Camponotus ant could acquire other secondary endosymbionts from Hemiptera host through their diet. In addition, Burkholderiales bacterium also was identified from the gut of C. japonicus for the first time, and whether it is a nitrogen-recycling endosymbiont in Camponotus ants needs to be investigated further.
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Affiliation(s)
- Hong He
- Northwest A&F University, Yangling, Shaanxi, 712100, China
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17
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Brucker RM, Bordenstein SR. THE ROLES OF HOST EVOLUTIONARY RELATIONSHIPS (GENUS: NASONIA) AND DEVELOPMENT IN STRUCTURING MICROBIAL COMMUNITIES. Evolution 2011; 66:349-62. [DOI: 10.1111/j.1558-5646.2011.01454.x] [Citation(s) in RCA: 111] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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18
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Ishak HD, Plowes R, Sen R, Kellner K, Meyer E, Estrada DA, Dowd SE, Mueller UG. Bacterial diversity in Solenopsis invicta and Solenopsis geminata ant colonies characterized by 16S amplicon 454 pyrosequencing. MICROBIAL ECOLOGY 2011; 61:821-831. [PMID: 21243351 DOI: 10.1007/s00248-010-9793-4] [Citation(s) in RCA: 128] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2010] [Accepted: 12/06/2010] [Indexed: 05/30/2023]
Abstract
Social insects harbor diverse assemblages of bacterial microbes, which may play a crucial role in the success or failure of biological invasions. The invasive fire ant Solenopsis invicta (Formicidae, Hymenoptera) is a model system for understanding the dynamics of invasive social insects and their biological control. However, little is known about microbes as biotic factors influencing the success or failure of ant invasions. This pilot study is the first attempt to characterize and compare microbial communities associated with the introduced S. invicta and the native Solenopsis geminata in the USA. Using 16S amplicon 454 pyrosequencing, bacterial communities of workers, brood, and soil from nest walls were compared between neighboring S. invicta and S. geminata colonies at Brackenridge Field Laboratory, Austin, Texas, with the aim of identifying potential pathogenic, commensal, or mutualistic microbial associates. Two samples of S. geminata workers showed high counts of Spiroplasma bacteria, a known pathogen or mutualist of other insects. A subsequent analysis using PCR and sequencing confirmed the presence of Spiroplasma in additional colonies of both Solenopsis species. Wolbachia was found in one alate sample of S. geminata, while one brood sample of S. invicta had a high count of Lactococcus. As expected, ant samples from both species showed much lower microbial diversity than the surrounding soil. Both ant species had similar overall bacterial diversities, although little overlap in specific microbes. To properly characterize a single bacterial community associated with a Solenopsis ant sample, rarefaction analyses indicate that it is necessary to obtain 5,000-10,000 sequences. Overall, 16S amplicon 454 pyrosequencing appears to be a cost-effective approach to screen whole microbial diversity associated with invasive ant species.
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Affiliation(s)
- Heather D Ishak
- Section of Integrative Biology, University of Texas at Austin, 2401 Speedway Drive C0930, Austin, TX 78712, USA.
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19
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Husseneder C, Simms DM, Aluko GK, Delatte J. Colony breeding system influences cuticular bacterial load of Formosan subterranean termite (Isoptera: Rhinotermitidae) workers. ENVIRONMENTAL ENTOMOLOGY 2010; 39:1715-1723. [PMID: 22182534 DOI: 10.1603/en09238] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
The goal of this study was to test whether the breeding system and/or the degree of inbreeding of field colonies of the Formosan subterranean termite, Coptotermes formosanus, Shiraki (Isoptera: Rhinotermitidae) influences bacterial load on the cuticle of foraging workers. We enumerated bacterial load on the cuticle of groups of workers foraging in 20 inground monitoring stations surrounding the French Market in New Orleans, LA, and identified bacteria species using 16S rRNA gene sequencing. We used microsatellite genotyping to assign the 20 worker groups to seven simple family colonies (headed by a single pair of reproductives) and four extended family colonies (headed by multiple inbreeding reproductives) with a wide range of degrees of inbreeding. Workers from extended family colonies had a higher bacterial load than those from simple family colonies; however, bacterial load was not significantly correlated to the degree of inbreeding, possibly because of confounding factors in colony life history, such as age and/or size of colonies. Colonies with high bacterial load did not have a higher proportion of entomopathogens, and thus, bacterial load is not necessarily an indicator for disease risk. The majority of bacteria cultured from the cuticle of termites were soil bacteria with no known pathology against termites.
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Affiliation(s)
- Claudia Husseneder
- Department of Entomology, Louisiana State University Agricultural Center, Baton Rouge, LA 70803, USA.
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20
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Bacterial community composition of the gut microbiota of Cylindroiulus fulviceps (diplopoda) as revealed by molecular fingerprinting and cloning. Folia Microbiol (Praha) 2010; 55:489-96. [PMID: 20941585 DOI: 10.1007/s12223-010-0081-y] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2010] [Revised: 06/02/2010] [Indexed: 10/19/2022]
Abstract
Bacterial clone libraries of the gut microbiota of nurtured and starved Cylindroiulus fulviceps specimens displayed the predominance of the phyla Bacteroidetes (55 and 37 %, respectively) and Proteobacteria (40 and 35 %, respectively) and a high similarity to bacteria previously detected in the intestinal tract of termites and beetles, which are known to harbor symbiotic bacteria essential for digestive activity. Bacterial isolates were dominated by Proteobacteria (74 %), followed by members of the phyla Actinobacteria, Firmicutes and Bacteroidetes. PCR-DGGE fingerprints of the gut samples showed that intestinal bacteria were affected by starvation, although the change was not significant.
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21
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Husseneder C, Ho HY, Blackwell M. Comparison of the bacterial symbiont composition of the formosan subterranean termite from its native and introduced range. Open Microbiol J 2010; 4:53-66. [PMID: 21347207 PMCID: PMC3040989 DOI: 10.2174/1874285801004010053] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2010] [Revised: 06/24/2010] [Accepted: 06/29/2010] [Indexed: 02/01/2023] Open
Abstract
We investigated the bacterial composition in the gut of Formosan subterranean termites (FST), Coptotermes formosanus Shiraki, collected from southern China (native range) vs. Louisiana, U. S. (introduced range) using 16S rRNA gene sequencing. Overall, we identified 213 bacteria ribotypes from thirteen phyla. The enemy release hypothesis could not be invoked to explain invasion success of FST since no pathogens were found among the bacterial gut community regardless of geographic origin. Invasion of new habitats did not significantly change the bacteria composition. Apparently, the tight co-evolutionary link between termites and their gut flora maintains a certain association of species and functional groups. Ribotype richness, bacteria diversity, and proportions of detected phyla were not influenced by geographic origin of FST samples; however, these parameters were affected by storage of the samples. Ethanol storage of termite samples (5 yrs) increased the relative proportions of gram-positive bacteria versus gram-negative bacteria.
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Affiliation(s)
- Claudia Husseneder
- Department of Entomology, Louisiana State University Agricultural Center, Baton Rouge, LA 70803, USA
| | - Huei-Yang Ho
- Department of Entomology, Louisiana State University Agricultural Center, Baton Rouge, LA 70803, USA
| | - Meredith Blackwell
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA
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22
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Estes AM, Hearn DJ, Bronstein JL, Pierson EA. The olive fly endosymbiont, "Candidatus Erwinia dacicola," switches from an intracellular existence to an extracellular existence during host insect development. Appl Environ Microbiol 2009; 75:7097-106. [PMID: 19767463 PMCID: PMC2786516 DOI: 10.1128/aem.00778-09] [Citation(s) in RCA: 79] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2009] [Accepted: 09/14/2009] [Indexed: 11/20/2022] Open
Abstract
As polyphagous, holometabolous insects, tephritid fruit flies (Diptera: Tephritidae) provide a unique habitat for endosymbiotic bacteria, especially those microbes associated with the digestive system. Here we examine the endosymbiont of the olive fly [Bactrocera oleae (Rossi) (Diptera: Tephritidae)], a tephritid of great economic importance. "Candidatus Erwinia dacicola" was found in the digestive systems of all life stages of wild olive flies from the southwestern United States. PCR and microscopy demonstrated that "Ca. Erwinia dacicola" resided intracellularly in the gastric ceca of the larval midgut but extracellularly in the lumen of the foregut and ovipositor diverticulum of adult flies. "Ca. Erwinia dacicola" is one of the few nonpathogenic endosymbionts that transitions between intracellular and extracellular lifestyles during specific stages of the host's life cycle. Another unique feature of the olive fly endosymbiont is that unlike obligate endosymbionts of monophagous insects, "Ca. Erwinia dacicola" has a G+C nucleotide composition similar to those of closely related plant-pathogenic and free-living bacteria. These two characteristics of "Ca. Erwinia dacicola," the ability to transition between intracellular and extracellular lifestyles and a G+C nucleotide composition similar to those of free-living relatives, may facilitate survival in a changing environment during the development of a polyphagous, holometabolous host. We propose that insect-bacterial symbioses should be classified based on the environment that the host provides to the endosymbiont (the endosymbiont environment).
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Affiliation(s)
- Anne M Estes
- Department of Ecology and Evolutionary Biology, University of Arizona, 310 BioSciences West, 1041 E. Lowell St., Tucson, AZ 85721, usa.
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23
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Geib SM, Jimenez-Gasco MDM, Carlson JE, Tien M, Jabbour R, Hoover K. Microbial community profiling to investigate transmission of bacteria between life stages of the wood-boring beetle, Anoplophora glabripennis. MICROBIAL ECOLOGY 2009; 58:199-211. [PMID: 19277770 DOI: 10.1007/s00248-009-9501-4] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2008] [Accepted: 02/09/2009] [Indexed: 05/27/2023]
Abstract
Many insects harbor specific bacteria in their digestive tract, and these gut microbiota often play important roles in digestion and nutrient provisioning. While it is common for a given insect species to harbor a representative gut microbial community as a population, how this community is acquired and maintained from generation to generation is not known for most xylophagous insects, except termites. In this study, we examined acquisition of gut microbiota by the wood-feeding beetle, Anoplophora glabripennis, by identifying and comparing microbial community members among different life stages of the insect and with microbes it encounters in the environment. Automated ribosomal intergenic spacer analysis was employed to compare bacterial communities present in the egg and larval stages of A. glabripennis as well as with microbes found in the oviposition site and the surrounding woody tissue. Multivariate analyses were used to identify relationships between sample type and specific bacterial types (operational taxonomic units). From this analysis, bacteria that were derived from the environment, the oviposition site, and/or the egg were identified and compared with taxa found in larvae. Results showed that while some larval microbes were derived from environmental sources, other members of the larval microbial community appear to be vertically transmitted. These findings could lead to a better understanding of which microbial species are critical for the survival of this insect and to development of techniques that could be used to alter this community to disrupt the digestive physiology of the host insect as a biological control measure.
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Affiliation(s)
- Scott M Geib
- Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802, USA
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24
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Medina F, Li H, Vinson SB, Coates CJ. Genetic Transformation of Midgut Bacteria from the Red Imported Fire Ant (Solenopsis invicta). Curr Microbiol 2009; 58:478-82. [DOI: 10.1007/s00284-008-9350-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2008] [Accepted: 12/16/2008] [Indexed: 10/21/2022]
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