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For: Sushko GB, Solov'yov IA, Solov'yov AV. Modeling MesoBioNano systems with MBN Studio made easy. J Mol Graph Model 2019;88:247-260. [PMID: 30776757 DOI: 10.1016/j.jmgm.2019.02.003] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2018] [Revised: 02/04/2019] [Accepted: 02/04/2019] [Indexed: 01/06/2023]
Number Cited by Other Article(s)
1
Solov’yov AV, Verkhovtsev AV, Mason NJ, Amos RA, Bald I, Baldacchino G, Dromey B, Falk M, Fedor J, Gerhards L, Hausmann M, Hildenbrand G, Hrabovský M, Kadlec S, Kočišek J, Lépine F, Ming S, Nisbet A, Ricketts K, Sala L, Schlathölter T, Wheatley AEH, Solov’yov IA. Condensed Matter Systems Exposed to Radiation: Multiscale Theory, Simulations, and Experiment. Chem Rev 2024;124:8014-8129. [PMID: 38842266 PMCID: PMC11240271 DOI: 10.1021/acs.chemrev.3c00902] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2023] [Revised: 05/02/2024] [Accepted: 05/10/2024] [Indexed: 06/07/2024]
2
Solov'yov IA, Sushko G, Friis I, Solov'yov AV. Multiscale modeling of stochastic dynamics processes with MBN Explorer. J Comput Chem 2022;43:1442-1458. [PMID: 35708151 DOI: 10.1002/jcc.26948] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2022] [Revised: 05/25/2022] [Accepted: 05/29/2022] [Indexed: 11/09/2022]
3
Prosvetov A, Verkhovtsev AV, Sushko G, Solov'yov AV. Atomistic simulation of the FEBID-driven growth of iron-based nanostructures. Phys Chem Chem Phys 2022;24:10807-10819. [PMID: 35475429 DOI: 10.1039/d2cp00809b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
4
Verkhovtsev AV, Nichols A, Mason NJ, Solov'yov AV. Molecular Dynamics Characterization of Radiosensitizing Coated Gold Nanoparticles in Aqueous Environment. J Phys Chem A 2022;126:2170-2184. [PMID: 35362970 DOI: 10.1021/acs.jpca.2c00489] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
5
Wu W, Pavloudis T, Verkhovtsev AV, Solov'yov AV, Palmer RE. Molecular dynamics simulation of nanofilament breakage in neuromorphic nanoparticle networks. NANOTECHNOLOGY 2022;33:275602. [PMID: 35412471 DOI: 10.1088/1361-6528/ac5e6d] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2021] [Accepted: 03/15/2022] [Indexed: 06/14/2023]
6
Beltukov YM, Conyuh DA, Solov'yov IA. Local elastic properties of polystyrene nanocomposites increase significantly due to nonaffine deformations. Phys Rev E 2022;105:L012501. [PMID: 35193276 DOI: 10.1103/physreve.105.l012501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2021] [Accepted: 12/17/2021] [Indexed: 11/07/2022]
7
Friis I, Verkhovtsev AV, Solov'yov IA, Solov'yov AV. Lethal DNA damage caused by ion-induced shock waves in cells. Phys Rev E 2021;104:054408. [PMID: 34942780 DOI: 10.1103/physreve.104.054408] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2021] [Accepted: 09/22/2021] [Indexed: 11/07/2022]
8
Prosvetov A, Verkhovtsev AV, Sushko G, Solov’yov AV. Irradiation-driven molecular dynamics simulation of the FEBID process for Pt(PF3)4. BEILSTEIN JOURNAL OF NANOTECHNOLOGY 2021;12:1151-1172. [PMID: 34760430 PMCID: PMC8551874 DOI: 10.3762/bjnano.12.86] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/01/2021] [Accepted: 10/01/2021] [Indexed: 06/13/2023]
9
Fortouna Y, de Vera P, Verkhovtsev AV, Solov’yov AV. Molecular dynamics simulations of sodium nanoparticle deposition on magnesium oxide. Theor Chem Acc 2021. [DOI: 10.1007/s00214-021-02780-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
10
de Vera P, Azzolini M, Sushko G, Abril I, Garcia-Molina R, Dapor M, Solov'yov IA, Solov'yov AV. Multiscale simulation of the focused electron beam induced deposition process. Sci Rep 2020;10:20827. [PMID: 33257728 PMCID: PMC7705715 DOI: 10.1038/s41598-020-77120-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Accepted: 11/03/2020] [Indexed: 11/09/2022]  Open
11
Friis I, Verkhovtsev A, Solov'yov IA, Solov'yov AV. Modeling the effect of ion-induced shock waves and DNA breakage with the reactive CHARMM force field. J Comput Chem 2020;41:2429-2439. [PMID: 32851682 DOI: 10.1002/jcc.26399] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2020] [Revised: 07/19/2020] [Accepted: 07/26/2020] [Indexed: 11/06/2022]
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