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Wang W, Tachibana R, Zou Z, Chen D, Zhang X, Lau K, Pojer F, Ward TR, Hu X. Manganese Transfer Hydrogenases Based on the Biotin-Streptavidin Technology. Angew Chem Int Ed Engl 2023; 62:e202311896. [PMID: 37671593 DOI: 10.1002/anie.202311896] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2023] [Revised: 09/03/2023] [Accepted: 09/06/2023] [Indexed: 09/07/2023]
Abstract
Artificial (transfer) hydrogenases have been developed for organic synthesis, but they rely on precious metals. Native hydrogenases use Earth-abundant metals, but these cannot be applied for organic synthesis due, in part, to their substrate specificity. Herein, we report the design and development of manganese transfer hydrogenases based on the biotin-streptavidin technology. By incorporating bio-mimetic Mn(I) complexes into the binding cavity of streptavidin, and through chemo-genetic optimization, we have obtained artificial enzymes that hydrogenate ketones with nearly quantitative yield and up to 98 % enantiomeric excess (ee). These enzymes exhibit broad substrate scope and high functional-group tolerance. According to QM/MM calculations and X-ray crystallography, the S112Y mutation, combined with the appropriate chemical structure of the Mn cofactor plays a critical role in the reactivity and enantioselectivity of the artificial metalloenzyme (ArMs). Our work highlights the potential of ArMs incorporating base-meal cofactors for enantioselective organic synthesis.
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Affiliation(s)
- Weijin Wang
- Laboratory of Inorganic Synthesis and Catalysis, Institute of Chemical Sciences and Engineering, École Polytechnique Fédérale de Lausanne ISIC-LSCI, BCH 3305, 1015, Lausanne, Switzerland
| | - Ryo Tachibana
- Department of Chemistry, University of Basel, Mattenstrasse 22, 4002, Basel, Switzerland
| | - Zhi Zou
- Department of Chemistry, University of Basel, Mattenstrasse 22, 4002, Basel, Switzerland
| | - Dongping Chen
- Department of Chemistry, University of Basel, Mattenstrasse 22, 4002, Basel, Switzerland
| | - Xiang Zhang
- Department of Chemistry, University of Basel, Mattenstrasse 22, 4002, Basel, Switzerland
| | - Kelvin Lau
- Protein Production and Structure Core Facility (PTPSP), School of Life Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland
| | - Florence Pojer
- Protein Production and Structure Core Facility (PTPSP), School of Life Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland
| | - Thomas R Ward
- Department of Chemistry, University of Basel, Mattenstrasse 22, 4002, Basel, Switzerland
- National Center of Competence in Research (NCCR) Catalysis, EPFL, 1015, Lausanne, Switzerland
| | - Xile Hu
- Laboratory of Inorganic Synthesis and Catalysis, Institute of Chemical Sciences and Engineering, École Polytechnique Fédérale de Lausanne ISIC-LSCI, BCH 3305, 1015, Lausanne, Switzerland
- National Center of Competence in Research (NCCR) Catalysis, EPFL, 1015, Lausanne, Switzerland
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2
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Shahraki S. Schiff base compounds as artificial metalloenzymes. Colloids Surf B Biointerfaces 2022; 218:112727. [PMID: 35921691 DOI: 10.1016/j.colsurfb.2022.112727] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2021] [Revised: 07/19/2022] [Accepted: 07/24/2022] [Indexed: 11/16/2022]
Abstract
Much research has been done on traditional homogeneous metal catalysts and enzymatic catalysts, but recently a new class of hybrid catalysts called synthetic (artificial) metalloenzymes has been considered by researchers. Metalloenzymes as hybrid catalysts (host-guest systems) have been shown that combine the properties of a homogeneous and also enzymatic catalyst. The hybrid catalyst will have added value such as enantioselectivity or chemo-selectivity. This review focuses on Schiff base complexes that either act as homogeneous artificial enzymes or contribute to the structure of a host in the preparation of hybrid metalloenzymes. Because this approach can virtually be applied to any bio- or synthetic host or guest coordination complex, the details of hybrid catalysts seem important for advance in catalysis.
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Liu Y, Lai KL, Vong K. Transition Metal Scaffolds Used To Bring New‐to‐Nature Reactions into Biological Systems. Eur J Inorg Chem 2022. [DOI: 10.1002/ejic.202200215] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Yifei Liu
- Department of Chemistry The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon Hong Kong China
| | - Ka Lun Lai
- Department of Chemistry The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon Hong Kong China
| | - Kenward Vong
- Department of Chemistry The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon Hong Kong China
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4
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Razmara Z, Shahraki S, Eigner V, Dusek M. Sonochemical synthesis, crystal structure and catalase interaction of a new 2D coordination polymer based on isoniazid and oxalato bridges. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.131276] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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5
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Vong K, Nasibullin I, Tanaka K. Exploring and Adapting the Molecular Selectivity of Artificial Metalloenzymes. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2021. [DOI: 10.1246/bcsj.20200316] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Kenward Vong
- Biofunctional Synthetic Chemistry Laboratory, RIKEN Cluster for Pioneering Research, Wako, Saitama 351-0198, Japan
- GlycoTargeting Research Laboratory, RIKEN Baton Zone Program, Wako, Saitama 351-0198, Japan
| | - Igor Nasibullin
- Biofunctional Synthetic Chemistry Laboratory, RIKEN Cluster for Pioneering Research, Wako, Saitama 351-0198, Japan
- Biofunctional Chemistry Laboratory, A. Butlerov Institute of Chemistry, Kazan Federal University, Kazan 420008, Russia
| | - Katsunori Tanaka
- Department of Chemical Science and Engineering, Tokyo Institute of Technology, Meguro-ku, Tokyo 152-8552, Japan
- Biofunctional Synthetic Chemistry Laboratory, RIKEN Cluster for Pioneering Research, Wako, Saitama 351-0198, Japan
- Biofunctional Chemistry Laboratory, A. Butlerov Institute of Chemistry, Kazan Federal University, Kazan 420008, Russia
- GlycoTargeting Research Laboratory, RIKEN Baton Zone Program, Wako, Saitama 351-0198, Japan
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Shao J, Zhou H, Wang Y, Luo Y, Yao Y. Lanthanum complexes stabilized by a pentadentate Schiff-base ligand: synthesis, characterization, and reactivity in statistical copolymerization of ε-caprolactone and l-lactide. Dalton Trans 2020; 49:5842-5850. [PMID: 32301451 DOI: 10.1039/d0dt00179a] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
Developing catalysts that are capable of catalyzing the copolymerization of ε-caprolactone and l-lactide to give random CL/LA copolymers is of great importance. One-pot reaction of La[N(SiMe3)2]3 with 1 equiv. of LH2 (LH2 = NH(CH2CH2N[double bond, length as m-dash]CHC6H2-3,5-tBu2-2-OH)2) in THF at room temperature, followed by protolysis with one equivalent amount of ROH (R = C6H2-2,6-tBu2-4-CH3, tBu, iPr, Bn, and Et) at 60 °C gave the mono-Schiff-base-ligated lanthanum aryloxide complex LLa(OC6H2-2,6-tBu2-4-CH3)(THF) (1), and lanthanum alkyloxide complexes LLaOtBu(THF) (2), [LLaOiPr]2 (3), [LLaOBn]2 (4), and [LLaOEt]2 (5) in 59-69% isolated yields. These lanthanum complexes were capable of initiating the homopolymerization of l-lactide and rac-lactide with extremely high activity, and the copolymerization of ε-caprolactone (ε-CL) and l-lactide (l-LA) to give statistical CL/LA copolymers via a transesterification reaction.
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Affiliation(s)
- Jingjing Shao
- College of Chemistry, Chemical Engineering & Materials Science, Soochow University, Suzhou 215123, P. R. China.
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Abstract
Chiral salen-metal complexes are among the most versatile asymmetric catalysts and have found utility in fields ranging from materials chemistry to organic synthesis. These complexes are capable of inducing chirality in products formed from a wide variety of chemical processes, often with close to perfect stereoinduction. Salen ligands are tunable for steric as well as electronic properties, and their ability to coordinate a large number of metals gives the derived chiral salen-metal complex very broad utility in asymmetric catalysis. This review primarily summarizes developments in chiral salen-metal catalysis over the last two decades with particular emphasis on those applications of importance in asymmetric synthesis.
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Affiliation(s)
- Subrata Shaw
- Center for the Development of Therapeutics , Broad Institute of MIT and Harvard , 415 Main Street , Cambridge , Massachusetts 02142 , United States
| | - James D White
- Department of Chemistry , Oregon State University , Corvallis , Oregon 97331 , United States
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Tang J, Yao P, Wang L, Bian H, Luo M, Huang F. Schiff base complex conjugates of bovine serum albumin as artificial metalloenzymes for eco-friendly enantioselective sulfoxidation. RSC Adv 2018; 8:40720-40730. [PMID: 35557885 PMCID: PMC9091609 DOI: 10.1039/c8ra07113f] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2018] [Accepted: 11/23/2018] [Indexed: 11/21/2022] Open
Abstract
Artificial metalloenzymes (BSA-ML) have been prepared by non-covalent insertion of transition metal Schiff-base complexes, ML (L = 2-hydroxynaphthalen-1-naphthaldehyde and 3,4-diaminobenzenesulfonic acid; M = Co, Mn, V, Fe, Cr), into bovine serum albumin (BSA) as the host protein and were characterized by UV-visible spectroscopy, ESI-TOF mass spectrometry and molecular docking studies. The catalytic activities of the BSA-ML in the selective oxidation of various prochiral sulfides in aqueous media, using H2O2 as oxidant, have been evaluated. During the optimization process, pH and the concentrations of catalyst and oxidant were found to have a remarkable influence on both yield and enantioselectivity. In certain cases, BSA-ML gave satisfactory results in the oxidation of organic sulfides to sulfoxides (up to 100% conversion, 100% chemoselectivity, 96% ee and 500 h-1 turnover frequency).
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Affiliation(s)
- Jie Tang
- School of Chemistry and Chemical Engineering, Guangxi University for Nationalities, Key Laboratory of Chemistry and Engineering of Forest Products Nanning 530008 P. R. China
- State Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources, School of Chemistry and Pharmacy, Guangxi Normal University Guilin 541004 P. R. China
- Guilin Normal College Guilin 541001 P. R. China
| | - Pengfei Yao
- State Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources, School of Chemistry and Pharmacy, Guangxi Normal University Guilin 541004 P. R. China
| | - Lina Wang
- State Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources, School of Chemistry and Pharmacy, Guangxi Normal University Guilin 541004 P. R. China
| | - Hedong Bian
- School of Chemistry and Chemical Engineering, Guangxi University for Nationalities, Key Laboratory of Chemistry and Engineering of Forest Products Nanning 530008 P. R. China
- State Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources, School of Chemistry and Pharmacy, Guangxi Normal University Guilin 541004 P. R. China
| | - Meiyi Luo
- Guilin Normal College Guilin 541001 P. R. China
| | - Fuping Huang
- State Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources, School of Chemistry and Pharmacy, Guangxi Normal University Guilin 541004 P. R. China
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Zamolo VA, Modugno G, Lubian E, Cazzolaro A, Mancin F, Giotta L, Mastrogiacomo D, Valli L, Saccani A, Krol S, Bonchio M, Carraro M. Selective Targeting of Proteins by Hybrid Polyoxometalates: Interaction Between a Bis-Biotinylated Hybrid Conjugate and Avidin. Front Chem 2018; 6:278. [PMID: 30050897 PMCID: PMC6050359 DOI: 10.3389/fchem.2018.00278] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2018] [Accepted: 06/20/2018] [Indexed: 01/05/2023] Open
Abstract
The Keggin-type polyoxometalate [γ-SiW10O36]8- was covalently modified to obtain a bis-biotinylated conjugate able to bind avidin. Spectroscopic studies such as UV-vis, fluorimetry, circular dichroism, coupled to surface plasmon resonance technique were used to highlight the unique interplay of supramolecular interactions between the homotetrameric protein and the bis-functionalized polyanion. In particular, the dual recognition mechanism of the avidin encompasses (i) a complementary electrostatic association between the anionic surface of the polyoxotungstate and each positively charged avidin subunit and (ii) specific host-guest interactions between each biotinylated arm and a corresponding pocket on the tetramer subunits. The assembly exhibits peroxidase-like reactivity and it was used in aqueous solution for L-methionine methyl ester oxidation by H2O2. The recognition phenomenon was then exploited for the preparation of layer-by-layer films, whose structural evolution was monitored in situ by ATR-FTIR spectroscopy. Finally, cell tracking studies were performed by exploiting the specific interactions with a labeled streptavidin.
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Affiliation(s)
- Valeria A Zamolo
- Department of Chemical Sciences, University of Padova and ITM-CNR, Padova, Italy
| | - Gloria Modugno
- Department of Chemical Sciences, University of Padova and ITM-CNR, Padova, Italy
| | - Elisa Lubian
- Department of Chemical Sciences, University of Padova and ITM-CNR, Padova, Italy
| | - Alessandro Cazzolaro
- Department of Chemical Sciences, University of Padova and ITM-CNR, Padova, Italy
| | - Fabrizio Mancin
- Department of Chemical Sciences, University of Padova and ITM-CNR, Padova, Italy
| | - Livia Giotta
- Department of Biological and Environmental Sciences and Technologies - DiSTeBA, University of Salento, Lecce, Italy
| | - Disma Mastrogiacomo
- Department of Biological and Environmental Sciences and Technologies - DiSTeBA, University of Salento, Lecce, Italy
| | - Ludovico Valli
- Department of Biological and Environmental Sciences and Technologies - DiSTeBA, University of Salento, Lecce, Italy
| | - Alessandra Saccani
- NanoMed Lab, Fondazione IRCCS Institute of Neurology "Carlo Besta," Milan, Italy
| | - Silke Krol
- NanoMed Lab, Fondazione IRCCS Institute of Neurology "Carlo Besta," Milan, Italy.,Laboratory of Translational Nanotechnology, IRCCS Oncologic Institute "Giovanni Paolo II," Bari, Italy
| | - Marcella Bonchio
- Department of Chemical Sciences, University of Padova and ITM-CNR, Padova, Italy
| | - Mauro Carraro
- Department of Chemical Sciences, University of Padova and ITM-CNR, Padova, Italy
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10
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Tang J, Huang F, Wei Y, Bian H, Zhang W, Liang H. Bovine serum albumin-cobalt(ii) Schiff base complex hybrid: an efficient artificial metalloenzyme for enantioselective sulfoxidation using hydrogen peroxide. Dalton Trans 2018; 45:8061-72. [PMID: 27075699 DOI: 10.1039/c5dt04507j] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
An artificial metalloenzyme (BSA-CoL) based on the incorporation of a cobalt(ii) Schiff base complex {CoL, H2L = 2,2'-[(1,2-ethanediyl)bis(nitrilopropylidyne)]bisphenol} with bovine serum albumin (BSA) has been synthesized and characterized. Attention is focused on the catalytic activity of this artificial metalloenzyme for enantioselective oxidation of a variety of sulfides with H2O2. The influences of parameters such as pH, temperature, and the concentration of catalyst and oxidant on thioanisole as a model are investigated. Under optimum conditions, BSA-CoL as a hybrid biocatalyst is efficient for the enantioselective oxidation of a series of sulfides, producing the corresponding sulfoxides with excellent conversion (up to 100%), chemoselectivity (up to 100%) and good enantiomeric purity (up to 87% ee) in certain cases.
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Affiliation(s)
- Jie Tang
- State Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources (School of Chemistry and Pharmacy, Guangxi Normal University), Guilin, 541004, P. R. China. and Guilin Normal College, Guilin 541001, P. R. China
| | - Fuping Huang
- State Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources (School of Chemistry and Pharmacy, Guangxi Normal University), Guilin, 541004, P. R. China.
| | - Yi Wei
- State Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources (School of Chemistry and Pharmacy, Guangxi Normal University), Guilin, 541004, P. R. China.
| | - Hedong Bian
- State Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources (School of Chemistry and Pharmacy, Guangxi Normal University), Guilin, 541004, P. R. China. and School of Chemistry and Chemical Engineering, Guangxi University for Nationalities, Key Laboratory of Chemistry and Engineering of Forest Products, Nanning, 530008, P. R. China.
| | - Wei Zhang
- State Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources (School of Chemistry and Pharmacy, Guangxi Normal University), Guilin, 541004, P. R. China.
| | - Hong Liang
- State Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources (School of Chemistry and Pharmacy, Guangxi Normal University), Guilin, 541004, P. R. China.
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Pocquet L, Vologdin N, Mangiatordi GF, Ciofini I, Nicolotti O, Thorimbert S, Salmain M. Supramolecular Anchoring of NCN-Pincer Palladium Complexes into a β-Barrel Protein Host: Molecular-Docking and Reactivity Insights. Eur J Inorg Chem 2017. [DOI: 10.1002/ejic.201700365] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Lucrèce Pocquet
- Sorbonne Universités; UPMC Univ Paris 06; CNRS; Institut Parisien de Chimie Moléculaire (IPCM); 4 Place Jussieu 75005 Paris France
| | - Nikolay Vologdin
- Sorbonne Universités; UPMC Univ Paris 06; CNRS; Institut Parisien de Chimie Moléculaire (IPCM); 4 Place Jussieu 75005 Paris France
| | - Giuseppe Felice Mangiatordi
- Dipartimento di Farmacia - Scienze del Farmaco; Università di Bari “Aldo Moro”; Via Orabona 4 70126 Bari Italy
| | - Ilaria Ciofini
- PSL Research university; Chimie ParisTech; CNRS Institut de Recherche de Chimie Paris (IRCP); 11 rue Pierre et Marie Curie 75005 Paris France
| | - Orazio Nicolotti
- Dipartimento di Farmacia - Scienze del Farmaco; Università di Bari “Aldo Moro”; Via Orabona 4 70126 Bari Italy
- Centro Ricerche TIRES; Università di Bari “Aldo Moro”; Via Amendola 173 70126 Bari Italy
| | - Serge Thorimbert
- Sorbonne Universités; UPMC Univ Paris 06; CNRS; Institut Parisien de Chimie Moléculaire (IPCM); 4 Place Jussieu 75005 Paris France
| | - Michèle Salmain
- Sorbonne Universités; UPMC Univ Paris 06; CNRS; Institut Parisien de Chimie Moléculaire (IPCM); 4 Place Jussieu 75005 Paris France
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12
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13
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Wu RH, Wu J, Yu MX, Zhu LG. Ti(Phen)(OC2H5)2Cl2: a highly efficient pre-catalyst for selective oxidation of organic sulfides to sulfoxides by hydrogen peroxide. RSC Adv 2017. [DOI: 10.1039/c7ra06883b] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Abstract
A structurally characterized titanium complex [Ti(Phen)(OC2H5)2Cl2] (Phen = 1,10-phenanthroline) is reported as a homogeneous pre-catalyst for the selective oxidation of organic sulfides to sulfoxides with a stoichiometric amount H2O2 in CH3OH at room temperature.
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Affiliation(s)
- Rong-Hui Wu
- Department of Chemistry
- Zhejiang University
- Hangzhou 310027
- People's Republic of China
- Key Laboratory of Chemical Utilization of Forestry Biomass of Zhejiang Province
| | - Jing Wu
- Department of Chemistry
- Zhejiang University
- Hangzhou 310027
- People's Republic of China
| | - Ming-Xin Yu
- Department of Chemistry
- Zhejiang University
- Hangzhou 310027
- People's Republic of China
| | - Long-Guan Zhu
- Department of Chemistry
- Zhejiang University
- Hangzhou 310027
- People's Republic of China
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Rondot L, Girgenti E, Oddon F, Marchi-Delapierre C, Jorge-Robin A, Ménage S. Catalysis without a headache: Modification of ibuprofen for the design of artificial metalloenzyme for sulfide oxidation. ACTA ACUST UNITED AC 2016. [DOI: 10.1016/j.molcata.2016.02.015] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
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15
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Library design and screening protocol for artificial metalloenzymes based on the biotin-streptavidin technology. Nat Protoc 2016; 11:835-52. [DOI: 10.1038/nprot.2016.019] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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17
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Świderek K, Tuñón I, Moliner V, Bertran J. Computational strategies for the design of new enzymatic functions. Arch Biochem Biophys 2015; 582:68-79. [PMID: 25797438 PMCID: PMC4554825 DOI: 10.1016/j.abb.2015.03.013] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2014] [Revised: 03/09/2015] [Accepted: 03/13/2015] [Indexed: 11/28/2022]
Abstract
In this contribution, recent developments in the design of biocatalysts are reviewed with particular emphasis in the de novo strategy. Studies based on three different reactions, Kemp elimination, Diels-Alder and Retro-Aldolase, are used to illustrate different success achieved during the last years. Finally, a section is devoted to the particular case of designed metalloenzymes. As a general conclusion, the interplay between new and more sophisticated engineering protocols and computational methods, based on molecular dynamics simulations with Quantum Mechanics/Molecular Mechanics potentials and fully flexible models, seems to constitute the bed rock for present and future successful design strategies.
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Affiliation(s)
- K Świderek
- Departament de Química Física, Universitat de València, 46100 Burjasot, Spain; Institute of Applied Radiation Chemistry, Lodz University of Technology, 90-924 Lodz, Poland
| | - I Tuñón
- Departament de Química Física, Universitat de València, 46100 Burjasot, Spain
| | - V Moliner
- Departament de Química Física i Analítica, Universitat Jaume I, 12071 Castellón, Spain
| | - J Bertran
- Departament de Química, Universitat Autònoma de Barcelona, 08193 Bellaterra, Spain.
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18
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Pàmies O, Diéguez M, Bäckvall JE. Artificial Metalloenzymes in Asymmetric Catalysis: Key Developments and Future Directions. Adv Synth Catal 2015. [DOI: 10.1002/adsc.201500290] [Citation(s) in RCA: 61] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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19
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Sansiaume-Dagousset E, Urvoas A, Chelly K, Ghattas W, Maréchal JD, Mahy JP, Ricoux R. Neocarzinostatin-based hybrid biocatalysts for oxidation reactions. Dalton Trans 2015; 43:8344-54. [PMID: 24728274 DOI: 10.1039/c4dt00151f] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
An anionic iron(III)-porphyrin-testosterone conjugate 1-Fe has been synthesized and fully characterized. It has been further associated with a neocarzinostatin variant, NCS-3.24, to generate a new artificial metalloenzyme following the so-called 'Trojan Horse' strategy. This new 1-Fe-NCS-3.24 biocatalyst showed an interesting catalytic activity as it was found able to catalyze the chemoselective and slightly enantioselective (ee = 13%) sulfoxidation of thioanisole by H2O2. Molecular modelling studies show that a synergy between the binding of the steroid moiety and that of the porphyrin macrocycle into the protein binding site can explain the experimental results, indicating a better affinity of 1-Fe for the NCS-3.24 variant than testosterone and testosterone-hemisuccinate themselves. They also show that the Fe-porphyrin complex is sandwiched between the two subdomains of the protein providing with good complementarities. However, the artificial cofactor entirely fills the cavity and its metal ion remains widely exposed to the solvent which explains the moderate enantioselectivity observed. Some possible improvements in the "Trojan Horse" strategy for obtaining better catalysts of selective oxidations are presented.
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Affiliation(s)
- Elodie Sansiaume-Dagousset
- Institut de Chimie Moléculaire et des Matériaux d'Orsay, UMR 8182 CNRS, Laboratoire de Chimie Bioorganique et Bioinorganique, Bât. 420, Université Paris-sud, 91405 Orsay Cedex, France.
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20
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Wang C, Chen Y, Fu WF. New platinum and ruthenium Schiff base complexes for water splitting reactions. Dalton Trans 2015. [DOI: 10.1039/c5dt01055a] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
New Pt(ii) and Ru(ii) complexes with Schiff base ligands display effective visible-light catalytic water reduction and Ce4+-driven oxidation activities, respectively.
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Affiliation(s)
- Chuanjun Wang
- Key Laboratory of Photochemical Conversion and Optoelectronic Materials and HKU-CAS Joint Laboratory on New Materials
- Technical Institute of Physics and Chemistry and University of Chinese Academy of Sciences
- CAS
- Beijing
- People's Republic of China
| | - Yong Chen
- Key Laboratory of Photochemical Conversion and Optoelectronic Materials and HKU-CAS Joint Laboratory on New Materials
- Technical Institute of Physics and Chemistry and University of Chinese Academy of Sciences
- CAS
- Beijing
- People's Republic of China
| | - Wen-Fu Fu
- Key Laboratory of Photochemical Conversion and Optoelectronic Materials and HKU-CAS Joint Laboratory on New Materials
- Technical Institute of Physics and Chemistry and University of Chinese Academy of Sciences
- CAS
- Beijing
- People's Republic of China
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21
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Marchi-Delapierre C, Rondot L, Cavazza C, Ménage S. Oxidation Catalysis by Rationally Designed Artificial Metalloenzymes. Isr J Chem 2014. [DOI: 10.1002/ijch.201400110] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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22
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Doble MV, Ward AC, Deuss PJ, Jarvis AG, Kamer PC. Catalyst design in oxidation chemistry; from KMnO4 to artificial metalloenzymes. Bioorg Med Chem 2014; 22:5657-77. [DOI: 10.1016/j.bmc.2014.07.002] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2014] [Revised: 06/27/2014] [Accepted: 07/01/2014] [Indexed: 01/07/2023]
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23
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Yu F, Cangelosi VM, Zastrow ML, Tegoni M, Plegaria JS, Tebo AG, Mocny CS, Ruckthong L, Qayyum H, Pecoraro VL. Protein design: toward functional metalloenzymes. Chem Rev 2014; 114:3495-578. [PMID: 24661096 PMCID: PMC4300145 DOI: 10.1021/cr400458x] [Citation(s) in RCA: 329] [Impact Index Per Article: 32.9] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Fangting Yu
- University of Michigan, Ann Arbor, Michigan 48109, United States
| | | | | | | | | | - Alison G. Tebo
- University of Michigan, Ann Arbor, Michigan 48109, United States
| | | | - Leela Ruckthong
- University of Michigan, Ann Arbor, Michigan 48109, United States
| | - Hira Qayyum
- University of Michigan, Ann Arbor, Michigan 48109, United States
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Dai DY, Wang L, Chen Q, He MY. Selective Oxidation of Sulfides to Sulfoxides Catalysed by Deep Eutectic Solvent with H2O2. JOURNAL OF CHEMICAL RESEARCH 2014. [DOI: 10.3184/174751914x13923144871332] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
A Brønsted acidic deep eutectic solvent based on choline chloride and p-toluenesulfonic acid (ChCl/ p-TsOH, 1:1) was prepared and utilised for the selective oxidation of sulfides with H2O2 as the oxidant. Broad substrate compatibility, good yields and selectivities, the reusability of the catalyst as well as the gram-scale synthesis are the major advantages of this protocol. Moreover, the use of ChCl/ p-TsOH, instead of neat p-TsOH, can greatly reduce the acid sewage especially in large-scale synthetic processes.
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Affiliation(s)
- Dong-yan Dai
- School of Petrochemical Engineering, Changzhou University, Changzhou 213164, P.R. China
| | - Liang Wang
- School of Petrochemical Engineering, Changzhou University, Changzhou 213164, P.R. China
| | - Qun Chen
- School of Petrochemical Engineering, Changzhou University, Changzhou 213164, P.R. China
| | - Ming-Yang He
- School of Petrochemical Engineering, Changzhou University, Changzhou 213164, P.R. China
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Raynal M, Ballester P, Vidal-Ferran A, van Leeuwen PWNM. Supramolecular catalysis. Part 2: artificial enzyme mimics. Chem Soc Rev 2013; 43:1734-87. [PMID: 24365792 DOI: 10.1039/c3cs60037h] [Citation(s) in RCA: 665] [Impact Index Per Article: 60.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
The design of artificial catalysts able to compete with the catalytic proficiency of enzymes is an intense subject of research. Non-covalent interactions are thought to be involved in several properties of enzymatic catalysis, notably (i) the confinement of the substrates and the active site within a catalytic pocket, (ii) the creation of a hydrophobic pocket in water, (iii) self-replication properties and (iv) allosteric properties. The origins of the enhanced rates and high catalytic selectivities associated with these properties are still a matter of debate. Stabilisation of the transition state and favourable conformations of the active site and the product(s) are probably part of the answer. We present here artificial catalysts and biomacromolecule hybrid catalysts which constitute good models towards the development of truly competitive artificial enzymes.
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Affiliation(s)
- Matthieu Raynal
- Institute of Chemical Research of Catalonia (ICIQ), Av. Països Catalans 16, 43007 Tarragona, Spain.
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26
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Denard CA, Hartwig JF, Zhao H. Multistep One-Pot Reactions Combining Biocatalysts and Chemical Catalysts for Asymmetric Synthesis. ACS Catal 2013. [DOI: 10.1021/cs400633a] [Citation(s) in RCA: 188] [Impact Index Per Article: 17.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
| | - John F. Hartwig
- Department
of Chemistry, University of California−Berkeley, Berkeley, California, United States
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Magnetic Nanoparticles Supported Binuclear Manganese(II) Complex via Covalent Interaction: A Highly Efficient and Reusable Catalyst for the Epoxidation of Cyclohexene. ACTA ACUST UNITED AC 2013. [DOI: 10.4028/www.scientific.net/amr.829.416] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In the present work, the highly efficient epoxidation of cyclohexene catalyzed by Fe3O4@SiO2/([Mn2L(HL)(H2O)4], is reported. First, the Fe3O4@SiO2 nanoparticles were modified with (3-chloropropyl)-trimethoxysilane (CPTMS) group and then [Mn2(HL)2(H2O)4] was attached to the support via covalent linkages. The prepared catalyst was characterized by spectroscopic studies and chemical analyses. This catalytic system serves as catalyst for the oxidation of cyclohexene to cyclohexene epoxide and 2-cyclohexene-1-ol using H2O2 as an oxidant. Thus, this catalytic system shows high activity and selectivity toward cyclohexene epoxide. Also activity of the immobilized catalyst remains nearly unchanged after five cycles, that it is truly heterogeneous.
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Hussain S, Talukdar D, Bharadwaj SK, Chaudhuri MK. VO2F(dmpz)2: a new catalyst for selective oxidation of organic sulfides to sulfoxides with H2O2. Tetrahedron Lett 2012. [DOI: 10.1016/j.tetlet.2012.09.067] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Włostowski M, Ruśkowski P, Synoradzki L. Tartaric Acid and itsO-Acyl Derivatives. Part 10. Synthesis and Applications of Tartramides, Tartrimides andO-Acyltartramides and Imides. ORG PREP PROCED INT 2012. [DOI: 10.1080/00304948.2012.715052] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Salam N, Mondal P, Mondal J, Roy AS, Bhaumik A, Islam SM. Highly efficient base catalysis and sulfide oxidation reactions over new functionalized mesoporous polymers. RSC Adv 2012. [DOI: 10.1039/c2ra20630g] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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Rajabi F, Naserian S, Primo A, Luque R. Efficient and Highly Selective Aqueous Oxidation of Sulfides to Sulfoxides at Room Temperature Catalysed by Supported Iron Oxide Nanoparticles on SBA-15. Adv Synth Catal 2011. [DOI: 10.1002/adsc.201100149] [Citation(s) in RCA: 69] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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32
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Peroxotungstates immobilized on multilayer ionic liquid brushes-modified silica as an efficient and reusable catalyst for selective oxidation of sulfides with H2O2. ACTA ACUST UNITED AC 2011. [DOI: 10.1016/j.molcata.2011.03.024] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Deuss PJ, den Heeten R, Laan W, Kamer PCJ. Bioinspired Catalyst Design and Artificial Metalloenzymes. Chemistry 2011; 17:4680-98. [DOI: 10.1002/chem.201003646] [Citation(s) in RCA: 166] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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Ward TR. Artificial metalloenzymes based on the biotin-avidin technology: enantioselective catalysis and beyond. Acc Chem Res 2011; 44:47-57. [PMID: 20949947 DOI: 10.1021/ar100099u] [Citation(s) in RCA: 250] [Impact Index Per Article: 19.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Artificial metalloenzymes are created by incorporating an organometallic catalyst within a host protein. The resulting hybrid can thus provide access to the best features of two distinct, and often complementary, systems: homogeneous and enzymatic catalysts. The coenzyme may be positioned with covalent, dative, or supramolecular anchoring strategies. Although initial reports date to the late 1970s, artificial metalloenzymes for enantioselective catalysis have gained significant momentum only in the past decade, with the aim of complementing homogeneous, enzymatic, heterogeneous, and organic catalysts. Inspired by a visionary report by Wilson and Whitesides in 1978, we have exploited the potential of biotin-avidin technology in creating artificial metalloenzymes. Owing to the remarkable affinity of biotin for either avidin or streptavidin, covalent linking of a biotin anchor to a catalyst precursor ensures that, upon stoichiometric addition of (strept)avidin, the metal moiety is quantitatively incorporated within the host protein. In this Account, we review our progress in preparing and optimizing these artificial metalloenzymes, beginning with catalytic hydrogenation as a model and expanding from there. These artificial metalloenzymes can be optimized by both chemical (variation of the biotin-spacer-ligand moiety) and genetic (mutation of avidin or streptavidin) means. Such chemogenetic optimization schemes were applied to various enantioselective transformations. The reactions implemented thus far include the following: (i) The rhodium-diphosphine catalyzed hydrogenation of N-protected dehydroaminoacids (ee up to 95%); (ii) the palladium-diphosphine catalyzed allylic alkylation of 1,3-diphenylallylacetate (ee up to 95%); (iii) the ruthenium pianostool-catalyzed transfer hydrogenation of prochiral ketones (ee up to 97% for aryl-alkyl ketones and ee up to 90% for dialkyl ketones); (iv) the vanadyl-catalyzed oxidation of prochiral sulfides (ee up to 93%). A number of noteworthy features are reminiscent of homogeneous catalysis, including straightforward access to both enantiomers of the product, the broad substrate scope, organic solvent tolerance, and an accessible range of reactions that are typical of homogeneous catalysts. Enzyme-like features include access to genetic optimization, an aqueous medium as the preferred solvent, Michaelis-Menten behavior, and single-substrate derivatization. The X-ray characterization of artificial metalloenzymes provides fascinating insight into possible enantioselection mechanisms involving a well-defined second coordination sphere environment. Thus, such artificial metalloenzymes combine attractive features of both homogeneous and enzymatic kingdoms. In the spirit of surface borrowing, that is, modulating ligand affinity by harnessing existing protein surfaces, this strategy can be extended to selectively binding streptavidin-incorporated biotinylated ruthenium pianostool complexes to telomeric DNA. This application paves the way for chemical biology applications of artificial metalloenzymes.
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Affiliation(s)
- Thomas R. Ward
- Department of Chemistry, University of Basel, Spitalstrasse 51, CH-4056 Basel, Switzerland
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Robles VM, Ortega-Carrasco E, Fuentes EG, Lledós A, Maréchal JD. What can molecular modelling bring to the design of artificial inorganic cofactors? Faraday Discuss 2011; 148:137-59; discussion 207-28. [DOI: 10.1039/c004578k] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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Brustad EM, Arnold FH. Optimizing non-natural protein function with directed evolution. Curr Opin Chem Biol 2010; 15:201-10. [PMID: 21185770 DOI: 10.1016/j.cbpa.2010.11.020] [Citation(s) in RCA: 173] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2010] [Revised: 11/15/2010] [Accepted: 11/24/2010] [Indexed: 10/18/2022]
Abstract
Developing technologies such as unnatural amino acid mutagenesis, non-natural cofactor engineering, and computational design are generating proteins with novel functions; these proteins, however, often do not reach performance targets and would benefit from further optimization. Evolutionary methods can complement these approaches: recent work combining unnatural amino acid mutagenesis and phage selection has created useful proteins of novel composition. Weak initial activity in a computationally designed enzyme has been improved by iterative rounds of mutagenesis and screening. A marriage of ingenuity and evolution will expand the scope of protein function well beyond Mother Nature's designs.
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Affiliation(s)
- Eric M Brustad
- Division of Chemistry & Chemical Engineering, California Institute of Technology, Pasadena, CA 91125, USA
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Wojaczyńska E, Wojaczyński J. Enantioselective synthesis of sulfoxides: 2000-2009. Chem Rev 2010; 110:4303-56. [PMID: 20415478 DOI: 10.1021/cr900147h] [Citation(s) in RCA: 324] [Impact Index Per Article: 23.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Elzbieta Wojaczyńska
- Department of Organic Chemistry, Faculty of Chemistry, Wrocław University of Technology, Wybrzeze Wyspiańskiego 27, 50 370 Wrocław, Poland.
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Oxidation of organic molecules in homogeneous aqueous solution catalyzed by hybrid biocatalysts (based on the Trojan Horse strategy). ACTA ACUST UNITED AC 2010. [DOI: 10.1016/j.tetasy.2010.03.050] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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