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Chen T, Baek SJ. Library-Based Raman Spectral Identification Using Multi-Input Hybrid ResNet. ACS OMEGA 2023; 8:37482-37489. [PMID: 37841175 PMCID: PMC10568588 DOI: 10.1021/acsomega.3c05780] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/07/2023] [Accepted: 09/14/2023] [Indexed: 10/17/2023]
Abstract
Raman spectroscopy is widely used for its exceptional identification capabilities in various fields. Traditional methods for target identification using Raman spectroscopy rely on signal correlation with moving windows, requiring data preprocessing that can significantly impact identification performance. In recent years, deep-learning approaches have been proposed to leverage data augmentation techniques, such as baseline and additive noise addition, in order to overcome data scarcity. However, these deep-learning methods are limited to the spectra encountered during training and struggle to handle unseen spectra. To address these limitations, we propose a multi-input hybrid deep-learning model trained with simulated spectral data. By employing simulated spectra, our method tackles the challenges of data scarcity and the handling of unseen spectra encountered in traditional and deep-learning methods. Experimental results demonstrate that our proposed method achieves outstanding identification performance and effectively handles spectra obtained from different Raman spectroscopy systems.
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Affiliation(s)
- Tiejun Chen
- Department of ICT Convergence
System Engineering, Chonnam National University, Gwangju 61186, South Korea
| | - Sung-June Baek
- Department of ICT Convergence
System Engineering, Chonnam National University, Gwangju 61186, South Korea
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2
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Liang H, Shi R, Wang H, Zhou Y. Advances in the application of Raman spectroscopy in haematological tumours. Front Bioeng Biotechnol 2023; 10:1103785. [PMID: 36704299 PMCID: PMC9871369 DOI: 10.3389/fbioe.2022.1103785] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2022] [Accepted: 12/29/2022] [Indexed: 01/12/2023] Open
Abstract
Hematologic malignancies are a diverse collection of cancers that affect the blood, bone marrow, and organs. They have a very unpredictable prognosis and recur after treatment. Leukemia, lymphoma, and myeloma are the most prevalent symptoms. Despite advancements in chemotherapy and supportive care, the incidence rate and mortality of patients with hematological malignancies remain high. Additionally, there are issues with the clinical diagnosis because several hematological malignancies lack defined, systematic diagnostic criteria. This work provided an overview of the fundamentals, benefits, and limitations of Raman spectroscopy and its use in hematological cancers. The alterations of trace substances can be recognized using Raman spectroscopy. High sensitivity, non-destructive, quick, real-time, and other attributes define it. Clinicians must promptly identify disorders and keep track of analytes in biological fluids. For instance, surface-enhanced Raman spectroscopy is employed in diagnosing gene mutations in myelodysplastic syndromes due to its high sensitivity and multiple detection benefits. Serum indicators for multiple myeloma have been routinely used for detection. The simultaneous observation of DNA strand modifications and the production of new molecular bonds by tip-enhanced Raman spectroscopy is of tremendous significance for diagnosing lymphoma and multiple myeloma with unidentified diagnostic criteria.
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Affiliation(s)
- Haoyue Liang
- State Key Laboratory of Experimental Hematology, National Clinical Research Center for Blood Diseases, Haihe Laboratory of Cell Ecosystem, Institute of Hematology and Blood Diseases Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Tianjin, China
| | - Ruxue Shi
- Tianjin University of Traditional Chinese Medicine, Tianjin, China
| | - Haoyu Wang
- State Key Laboratory of Experimental Hematology, National Clinical Research Center for Blood Diseases, Haihe Laboratory of Cell Ecosystem, Institute of Hematology and Blood Diseases Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Tianjin, China
| | - Yuan Zhou
- State Key Laboratory of Experimental Hematology, National Clinical Research Center for Blood Diseases, Haihe Laboratory of Cell Ecosystem, Institute of Hematology and Blood Diseases Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Tianjin, China,*Correspondence: Yuan Zhou,
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3
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UV-responsive fluorescent behavior of pharmaceuticals assessed by UV-induced fingerprint spectroscopy (UV-IFS). Int J Pharm 2022; 628:122289. [DOI: 10.1016/j.ijpharm.2022.122289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Revised: 09/29/2022] [Accepted: 10/09/2022] [Indexed: 11/21/2022]
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4
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Ling J, Zheng L, Xu M, Chen G, Wang X, Mao D, Shao H. Extreme Point Sort Transformation Combined With a Long Short-Term Memory Network Algorithm for the Raman-Based Identification of Therapeutic Monoclonal Antibodies. Front Chem 2022; 10:887960. [PMID: 35494658 PMCID: PMC9043956 DOI: 10.3389/fchem.2022.887960] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Accepted: 03/23/2022] [Indexed: 11/13/2022] Open
Abstract
Therapeutic monoclonal antibodies (mAbs) are a new generation of protein-based medicines that are usually expensive and thus represent a target for counterfeiters. In the present study, a method based on Raman spectroscopy that combined extreme point sort transformation with a long short-term memory (LSTM) network algorithm was presented for the identification of therapeutic mAbs. A total of 15 therapeutic mAbs were used in this study. An in-house Raman spectrum dataset for model training was created with 1,350 spectra. The characteristic region of the Raman spectrum was reduced in dimension and then transformed through an extreme point sort transformation into a sequence array, which was fitted for the LSTM network. The characteristic array was extracted from the sequence array using a well-trained LSTM network and then compared with standard spectra for identification. To demonstrate whether the present algorithm was better, ThermoFisher OMNIC 8.3 software (Thermo Fisher Scientific Inc., U.S.) with two matching modes was selected for comparison. Finally, the present method was successfully applied to identify 30 samples, including 15 therapeutic mAbs and 15 other injections. The characteristic region was selected from 100 to 1800 cm−1 of the full spectrum. The optimized dimensional values were set from 35 to 53, and the threshold value range was from 0.97 to 0.99 for 15 therapeutic mAbs. The results of the robustness test indicated that the present method had good robustness against spectral peak drift, random noise and fluorescence interference from the measurement. The areas under the curve (AUC) values of the present method that were analysed on the full spectrum and analysed on the characteristic region by the OMNIC 8.3 software’s built-in method were 1.000, 0.678, and 0.613, respectively. The similarity scores for 15 therapeutic mAbs using OMNIC 8.3 software in all groups compared with that of the relative present algorithm group had extremely remarkable differences (p < 0.001). The results suggested that the extreme point sort transformation combined with the LSTM network algorithm enabled the characteristic extraction of the therapeutic mAb Raman spectrum. The present method is a proposed solution to rapidly identify therapeutic mAbs.
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Affiliation(s)
- Jin Ling
- NMPA Key Laboratory for Quality Control of Therapeutic Monoclonal Antibodies, Shanghai Institute for Food and Drug Control, Shanghai, China
| | - Luxia Zheng
- NMPA Key Laboratory for Quality Control of Therapeutic Monoclonal Antibodies, Shanghai Institute for Food and Drug Control, Shanghai, China
| | - Mingming Xu
- NMPA Key Laboratory for Quality Control of Therapeutic Monoclonal Antibodies, Shanghai Institute for Food and Drug Control, Shanghai, China
| | - Gang Chen
- NMPA Key Laboratory for Quality Control of Therapeutic Monoclonal Antibodies, Shanghai Institute for Food and Drug Control, Shanghai, China
| | - Xiao Wang
- NMPA Key Laboratory for Quality Analysis of Chemical Drug Preparations, Shanghai Institute for Food and Drug Control, Shanghai, China
| | - Danzhuo Mao
- NMPA Key Laboratory for Quality Analysis of Chemical Drug Preparations, Shanghai Institute for Food and Drug Control, Shanghai, China
| | - Hong Shao
- NMPA Key Laboratory for Quality Control of Therapeutic Monoclonal Antibodies, Shanghai Institute for Food and Drug Control, Shanghai, China
- *Correspondence: Hong Shao,
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5
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Caillet C, Vickers S, Vidhamaly V, Boutsamay K, Boupha P, Zambrzycki S, Luangasanatip N, Lubell Y, Fernández FM, Newton PN. Evaluation of portable devices for medicine quality screening: Lessons learnt, recommendations for implementation, and future priorities. PLoS Med 2021; 18:e1003747. [PMID: 34591861 PMCID: PMC8483386 DOI: 10.1371/journal.pmed.1003747] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
Abstract
Céline Caillet and co-authors discuss a Collection on use of portable devices for the evaluation of medicine quality and legitimacy.
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Affiliation(s)
- Céline Caillet
- Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao PDR
- Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom
- Infectious Diseases Data Observatory (IDDO)/WorldWide Antimalarial Resistance Network (WWARN), University of Oxford, Oxford, United Kingdom
| | - Serena Vickers
- Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao PDR
- Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom
- Infectious Diseases Data Observatory (IDDO)/WorldWide Antimalarial Resistance Network (WWARN), University of Oxford, Oxford, United Kingdom
| | - Vayouly Vidhamaly
- Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao PDR
- Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom
- Infectious Diseases Data Observatory (IDDO)/WorldWide Antimalarial Resistance Network (WWARN), University of Oxford, Oxford, United Kingdom
| | - Kem Boutsamay
- Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao PDR
- Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom
- Infectious Diseases Data Observatory (IDDO)/WorldWide Antimalarial Resistance Network (WWARN), University of Oxford, Oxford, United Kingdom
| | - Phonepasith Boupha
- Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao PDR
- Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom
- Infectious Diseases Data Observatory (IDDO)/WorldWide Antimalarial Resistance Network (WWARN), University of Oxford, Oxford, United Kingdom
| | - Stephen Zambrzycki
- School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia, United States of America
| | - Nantasit Luangasanatip
- Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand
| | - Yoel Lubell
- Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom
- Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand
| | - Facundo M. Fernández
- School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia, United States of America
| | - Paul N. Newton
- Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao PDR
- Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom
- Infectious Diseases Data Observatory (IDDO)/WorldWide Antimalarial Resistance Network (WWARN), University of Oxford, Oxford, United Kingdom
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Khannanov MN, Van'kov AB, Novikov AA, Semenov AP, Gushchin PA, Gubarev SI, Kirpichev VE, Morozova EN, Kulik LV, Kukushkin IV. Analysis of Natural Gas Using a Portable Hollow-Core Photonic Crystal Coupled Raman Spectrometer. APPLIED SPECTROSCOPY 2020; 74:1496-1504. [PMID: 32162524 DOI: 10.1177/0003702820915535] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
The low accessibility of natural gas fields and transporting pipelines requires portable online analyzers of the composition of natural gas, ensuring nearly chromatographic precision and capable of in situ analysis of a wide range of gases, including infrared-inactive ones (hydrogen, oxygen, nitrogen, chlorine). We have developed an express method of gas analysis meeting all the requirements for analysis of natural gas and its derivative mixtures using a portable 532 nm Raman spectrometer rigidly connected to a hollow-core crystal photonic fiber.
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Affiliation(s)
- Maksim N Khannanov
- Institute of Solid State Physics Russian Academy of Sciences, Chernogolovka, Russian Federation
| | - Alexander B Van'kov
- Institute of Solid State Physics Russian Academy of Sciences, Chernogolovka, Russian Federation
| | - Andrei A Novikov
- Gubkin Russian State University of Oil and Gas 65/1 Leninsky prospect, 119991, Moscow, Russia, Moskva 119991, Russian Federation
| | - Anton P Semenov
- Gubkin Russian State University of Oil and Gas 65/1 Leninsky prospect, 119991, Moscow, Russia, Moskva 119991, Russian Federation
| | - Pavel A Gushchin
- Gubkin Russian State University of Oil and Gas 65/1 Leninsky prospect, 119991, Moscow, Russia, Moskva 119991, Russian Federation
| | - Sergei I Gubarev
- Institute of Solid State Physics Russian Academy of Sciences, Chernogolovka, Russian Federation
| | - Vadim E Kirpichev
- Institute of Solid State Physics Russian Academy of Sciences, Chernogolovka, Russian Federation
| | - Elena N Morozova
- Institute of Solid State Physics Russian Academy of Sciences, Chernogolovka, Russian Federation
| | - Leonid V Kulik
- Institute of Solid State Physics Russian Academy of Sciences, Chernogolovka, Russian Federation
| | - Igor V Kukushkin
- Institute of Solid State Physics Russian Academy of Sciences, Chernogolovka, Russian Federation
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7
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Park JK, Lee S, Park A, Baek SJ. Adaptive Hit-Quality Index for Raman Spectrum Identification. Anal Chem 2020; 92:10291-10299. [PMID: 32493007 DOI: 10.1021/acs.analchem.0c00209] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The recognition capability of the identification system using Raman spectroscopy is increasing with the demands in the field. Among the various approaches that determine the identity of a target, signal correlation using a moving window is one of the most effective and intuitive methods. In this paper, we report a new correlation method that is robust to spectral intensity variations. Using the peak distribution of a given spectrum, this method adaptively determines meaningful spectral regions for the identification target. Three commercial Raman spectrometer and a 14 033 library were included in the study, which was used for a library-based chemical discrimination test and mixed material analysis experiments. According to the identification experimental results, the proposed method correctly identified all of the spectra and maintained a mean correlation score above 0.95 while maintaining the correlation score of nontarget materials as low as possible.
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Affiliation(s)
- Jun-Kyu Park
- Mechatronics Technology Convergence Group, Korea Institute of Industrial Technology, Dague 31056, South Korea
| | - Suwoong Lee
- Mechatronics Technology Convergence Group, Korea Institute of Industrial Technology, Dague 31056, South Korea
| | - Aaron Park
- Department of Electronics Engineering, Chonnam National University, Gwangju 61186, South Korea
| | - Sung-June Baek
- Department of Electronics Engineering, Chonnam National University, Gwangju 61186, South Korea
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8
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Wei XC, Cao B, Luo CH, Huang HZ, Tan P, Xu XR, Xu RC, Yang M, Zhang Y, Han L, Zhang DK. Recent advances of novel technologies for quality consistency assessment of natural herbal medicines and preparations. Chin Med 2020; 15:56. [PMID: 32514289 PMCID: PMC7268247 DOI: 10.1186/s13020-020-00335-9] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2020] [Accepted: 05/20/2020] [Indexed: 12/20/2022] Open
Abstract
Quality consistency is one of the basic attributes of medicines, but it is also a difficult problem that natural medicines and their preparations must face. The complex chemical composition and comprehensive pharmacological action of natural medicines make it difficult to simply apply the commonly used evaluation methods in chemical drugs. It is thus urgent to explore the novel evaluation methods suitable for the characteristics of natural medicines. With the rapid development of analytical techniques and the deepening understanding of the quality of natural herbs, increasing numbers of researchers have proposed many new ideas and technologies. This review mainly focuses on the basic principles, technical characteristics and application examples of the chemical evaluation, biological evaluation methods and their combination in quality consistency evaluation of natural herbs. On the bases of chemical evaluation and clinical efficacy, new methods reflecting their pharmacodynamic mechanism and safety characteristics will be developed, and gradually towards accurate quality control, to achieve the goal of quality consistency. We hope that this manuscript can provide new ideas and technical references for the quality consistency of natural drugs and their preparations, thus better guarantee their clinical efficacy and safety, and better promote industrial development.
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Affiliation(s)
- Xi-Chuan Wei
- School of Pharmacy, State Key Laboratory of Characteristic Chinese Drug Resources in Southwest China, Chengdu University of Traditional Chinese Medicine, No. 1066 Avenue. Liutai, Chengdu, 611137 China
| | - Bo Cao
- School of Pharmacy, State Key Laboratory of Characteristic Chinese Drug Resources in Southwest China, Chengdu University of Traditional Chinese Medicine, No. 1066 Avenue. Liutai, Chengdu, 611137 China
| | - Chuan-Hong Luo
- School of Pharmacy, State Key Laboratory of Characteristic Chinese Drug Resources in Southwest China, Chengdu University of Traditional Chinese Medicine, No. 1066 Avenue. Liutai, Chengdu, 611137 China
| | - Hao-Zhou Huang
- School of Pharmacy, State Key Laboratory of Characteristic Chinese Drug Resources in Southwest China, Chengdu University of Traditional Chinese Medicine, No. 1066 Avenue. Liutai, Chengdu, 611137 China
| | - Peng Tan
- Sichuan Academy of Traditional Chinese Medicine, State Key Laboratory of Quality Evaluation of Traditional Chinese Medicine, Chengdu, 610041 China
| | - Xiao-Rong Xu
- School of Pharmacy, State Key Laboratory of Characteristic Chinese Drug Resources in Southwest China, Chengdu University of Traditional Chinese Medicine, No. 1066 Avenue. Liutai, Chengdu, 611137 China
| | - Run-Chun Xu
- School of Pharmacy, State Key Laboratory of Characteristic Chinese Drug Resources in Southwest China, Chengdu University of Traditional Chinese Medicine, No. 1066 Avenue. Liutai, Chengdu, 611137 China
| | - Ming Yang
- Jiangxi University of Traditional Chinese Medicine, Nanchang, 330004 China
| | - Yi Zhang
- Chengdu Food and Drug Control, Chengdu, 610000 China
| | - Li Han
- School of Pharmacy, State Key Laboratory of Characteristic Chinese Drug Resources in Southwest China, Chengdu University of Traditional Chinese Medicine, No. 1066 Avenue. Liutai, Chengdu, 611137 China
| | - Ding-Kun Zhang
- School of Pharmacy, State Key Laboratory of Characteristic Chinese Drug Resources in Southwest China, Chengdu University of Traditional Chinese Medicine, No. 1066 Avenue. Liutai, Chengdu, 611137 China
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