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Gentili PL. Determining Chemical Microheterogeneity from the Analysis of Absorption and Luminescence Transient Signals. J Phys Chem B 2024; 128:8259-8271. [PMID: 39148451 DOI: 10.1021/acs.jpcb.4c04707] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/17/2024]
Abstract
The characterization of chemical microheterogeneity is compelling due to its relevant role in soft materials, high-entropy materials, and systems chemistry, to cite just a few instances. This work investigates the microheterogeneity of photochromic samples and metal oxide solid solutions by fitting time-resolved absorption and luminesce signals recorded after photoexcitation. The transient spectroscopic signals have been analyzed using polyexponential functions determined through the Maximum Entropy Method (MEM) and discrete exponential, Kohlrausch, and Becquerel functions through the Levenberg-Marquardt algorithm. The outputs of the different fitting functions and algorithms are compared and exploited to characterize chemical microheterogeneity quantitatively. The practical relevance of chemical microheterogeneity is supported by the demonstration that photochromic samples are transformed from binary to multistate systems, capable of encoding much more information, and that microheterogeneous photocatalysts are provided with several structural defects that guarantee the coexistence of many active sites and higher catalytic activity.
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Affiliation(s)
- Pier Luigi Gentili
- Department of Chemistry, Biology, and Biotechnology, Università degli Studi di Perugia, Via Elce di sotto 8, 06123 Perugia, Italy
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2
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Gentili PL, Stano P. Living cells and biological mechanisms as prototypes for developing chemical artificial intelligence. Biochem Biophys Res Commun 2024; 720:150060. [PMID: 38754164 DOI: 10.1016/j.bbrc.2024.150060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2023] [Revised: 03/25/2024] [Accepted: 05/06/2024] [Indexed: 05/18/2024]
Abstract
Artificial Intelligence (AI) is having a revolutionary impact on our societies. It is helping humans in facing the global challenges of this century. Traditionally, AI is developed in software or through neuromorphic engineering in hardware. More recently, a brand-new strategy has been proposed. It is the so-called Chemical AI (CAI), which exploits molecular, supramolecular, and systems chemistry in wetware to mimic human intelligence. In this work, two promising approaches for boosting CAI are described. One regards designing and implementing neural surrogates that can communicate through optical or chemical signals and give rise to networks for computational purposes and to develop micro/nanorobotics. The other approach concerns "bottom-up synthetic cells" that can be exploited for applications in various scenarios, including future nano-medicine. Both topics are presented at a basic level, mainly to inform the broader audience of non-specialists, and so favour the rise of interest in these frontier subjects.
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Affiliation(s)
- Pier Luigi Gentili
- Department of Chemistry, Biology, and Biotechnology, Università degli Studi di Perugia, Perugia, Italy.
| | - Pasquale Stano
- Department of Biological and Environmental Sciences and Technologies (DiSTeBA), University of Salento, Lecce, Italy.
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3
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Gentili PL. The Conformational Contribution to Molecular Complexity and Its Implications for Information Processing in Living Beings and Chemical Artificial Intelligence. Biomimetics (Basel) 2024; 9:121. [PMID: 38392167 PMCID: PMC10886813 DOI: 10.3390/biomimetics9020121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2023] [Revised: 02/16/2024] [Accepted: 02/17/2024] [Indexed: 02/24/2024] Open
Abstract
This work highlights the relevant contribution of conformational stereoisomers to the complexity and functions of any molecular compound. Conformers have the same molecular and structural formulas but different orientations of the atoms in the three-dimensional space. Moving from one conformer to another is possible without breaking covalent bonds. The interconversion is usually feasible through the thermal energy available in ordinary conditions. The behavior of most biopolymers, such as enzymes, antibodies, RNA, and DNA, is understandable if we consider that each exists as an ensemble of conformers. Each conformational collection confers multi-functionality and adaptability to the single biopolymers. The conformational distribution of any biopolymer has the features of a fuzzy set. Hence, every compound that exists as an ensemble of conformers allows the molecular implementation of a fuzzy set. Since proteins, DNA, and RNA work as fuzzy sets, it is fair to say that life's logic is fuzzy. The power of processing fuzzy logic makes living beings capable of swift decisions in environments dominated by uncertainty and vagueness. These performances can be implemented in chemical robots, which are confined molecular assemblies mimicking unicellular organisms: they are supposed to help humans "colonise" the molecular world to defeat diseases in living beings and fight pollution in the environment.
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Affiliation(s)
- Pier Luigi Gentili
- Department of Chemistry, Biology, and Biotechnology, Università degli Studi di Perugia, 06123 Perugia, Italy
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4
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Mougkogiannis P, Adamatzky A. Light induced spiking of proteinoids. Biosystems 2023; 232:105015. [PMID: 37657746 DOI: 10.1016/j.biosystems.2023.105015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Revised: 08/26/2023] [Accepted: 08/26/2023] [Indexed: 09/03/2023]
Abstract
Proteinoids, or thermal proteins, are produced by heating amino acids to their melting point and initiating polymerisation to produce polymeric chains. In aqueous solutions proteinoids swell into hollow microspheres. These microspheres produce endogenous burst of electrical potential spikes and change patterns of their electrical activity in response to illumination. We report results on a detailed investigation on the effects of white cold light on the spiking of proteinoids. We study how different types and intensities of light determine proteinoids' spiking amplitude, period, and pattern. The results of this study will be utilised to evaluate proteinoids for their potential as optical sensors and their application in unconventional computing.
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5
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Stano P, Gentili PL, Damiano L, Magarini M. A Role for Bottom-Up Synthetic Cells in the Internet of Bio-Nano Things? Molecules 2023; 28:5564. [PMID: 37513436 PMCID: PMC10385758 DOI: 10.3390/molecules28145564] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2023] [Revised: 06/29/2023] [Accepted: 07/18/2023] [Indexed: 07/30/2023] Open
Abstract
The potential role of bottom-up Synthetic Cells (SCs) in the Internet of Bio-Nano Things (IoBNT) is discussed. In particular, this perspective paper focuses on the growing interest in networks of biological and/or artificial objects at the micro- and nanoscale (cells and subcellular parts, microelectrodes, microvessels, etc.), whereby communication takes place in an unconventional manner, i.e., via chemical signaling. The resulting "molecular communication" (MC) scenario paves the way to the development of innovative technologies that have the potential to impact biotechnology, nanomedicine, and related fields. The scenario that relies on the interconnection of natural and artificial entities is briefly introduced, highlighting how Synthetic Biology (SB) plays a central role. SB allows the construction of various types of SCs that can be designed, tailored, and programmed according to specific predefined requirements. In particular, "bottom-up" SCs are briefly described by commenting on the principles of their design and fabrication and their features (in particular, the capacity to exchange chemicals with other SCs or with natural biological cells). Although bottom-up SCs still have low complexity and thus basic functionalities, here, we introduce their potential role in the IoBNT. This perspective paper aims to stimulate interest in and discussion on the presented topics. The article also includes commentaries on MC, semantic information, minimal cognition, wetware neuromorphic engineering, and chemical social robotics, with the specific potential they can bring to the IoBNT.
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Affiliation(s)
- Pasquale Stano
- Department of Biological and Environmental Sciences and Technologies (DiSTeBA), University of Salento, 73100 Lecce, Italy
| | - Pier Luigi Gentili
- Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, 06123 Perugia, Italy
| | - Luisa Damiano
- Department of Communication, Arts and Media, IULM University, 20143 Milan, Italy
| | - Maurizio Magarini
- Department of Electronics, Information and Bioengineering, Politecnico di Milano, 20133 Milan, Italy
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6
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Deb S, Sahoo A, Karmakar S, Baitalik S. Multi-channel anion sensing behaviour of a Ru(II)-bipyridine complex based on benzothiazolyl pyrazole ligand: experimental and implication of machine learning tools for data prediction. Inorganica Chim Acta 2023. [DOI: 10.1016/j.ica.2023.121451] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/27/2023]
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7
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Gentili PL, Capaccioni A, Germani R, Fantacci S. The Versatile Photo-Thermal Behaviour of a 2-Hydroxyazobenzene. Molecules 2023; 28:molecules28031183. [PMID: 36770849 PMCID: PMC9920310 DOI: 10.3390/molecules28031183] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2022] [Revised: 01/21/2023] [Accepted: 01/23/2023] [Indexed: 01/27/2023] Open
Abstract
Photochromic compounds are employed in implementing neuron surrogates. They will boost the development of neuromorphic engineering in wetware. In this work, the photochromic behaviours of (E)-3,4,6-trichloro-2-(p-diazenil)-phenol (t-DZH) and its conjugated phenoxide base (t-DZ) have been investigated experimentally in three different media: (1) pure acetonitrile, (2) in water and acetonitrile mixed in a 1/1 volume ratio, and (3) in an aqueous micellar solution of 3-(N,N-Dimethylmyristylammonio)propanesulfonate (SB3-14). The analysis of the spectral and kinetic features of t-DZH and t-DZ has been supported by quantum-mechanical DFT calculations, the maximum entropy method, and the determination of their colourability (C). The versatility of t-DZH and t-DZ makes them promising molecular probes of micro-environments and potential ingredients of photochemical oscillators required for implementing pacemaker neurons capable of communicating through optical signals in wetware.
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Affiliation(s)
- Pier Luigi Gentili
- Department of Chemistry, Biology and Biotechnology, Università degli Studi di Perugia, 06123 Perugia, Italy
- Correspondence: ; Tel.: +39-0755855573
| | - Antonio Capaccioni
- Department of Chemistry, Biology and Biotechnology, Università degli Studi di Perugia, 06123 Perugia, Italy
| | - Raimondo Germani
- Department of Chemistry, Biology and Biotechnology, Università degli Studi di Perugia, 06123 Perugia, Italy
| | - Simona Fantacci
- Istituto CNR di Scienze e Tecnologie Chimiche “Giulio Natta” (CNR-SCITEC), 06123 Perugia, Italy
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8
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Budroni MA, Lemaigre L, Escala DM, Wit AD. Buoyancy-Driven Chemohydrodynamic Patterns in A + B → Oscillator Two-Layer Stratifications. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2023; 39:997-1009. [PMID: 36623172 PMCID: PMC9940852 DOI: 10.1021/acs.langmuir.2c02548] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/15/2022] [Revised: 12/13/2022] [Indexed: 06/17/2023]
Abstract
Chemohydrodynamic patterns due to the interplay of buoyancy-driven instabilities and reaction-diffusion patterns are studied experimentally in a vertical quasi-two-dimensional reactor in which two solutions A and B containing separate reactants of the oscillating Belousov-Zhabotinsky system are placed in contact along a horizontal contact line where excitable or oscillating dynamics can develop. Different types of buoyancy-driven instabilities are selectively induced in the reactive zone depending on the initial density jump between the two layers, controlled here by the bromate salt concentration. Starting from a less dense solution above a denser one, two possible differential diffusion instabilities are triggered depending on whether the fast diffusing sulfuric acid is in the upper or lower solution. Specifically, when the solution containing malonic acid and sulfuric acid is stratified above the one containing the slow-diffusing bromate salt, a diffusive layer convection (DLC) instability is observed with localized convective rolls around the interface. In that case, the reaction-diffusion wave patterns remain localized above the initial contact line, scarcely affected by the flow. If, on the contrary, sulfuric acid diffuses upward because it is initially dissolved in the lower layer, then a double-diffusion (DD) convective mode develops. This triggers fingers across the interface that mix the reactants such that oscillatory dynamics and rippled waves develop throughout the whole reactor. If the denser solution is put on top of the other one, then a fast developing Rayleigh-Taylor (RT) instability induces fast mixing of all reactants such that classical reaction-diffusion waves develop later on in the convectively mixed solutions.
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Affiliation(s)
- M. A. Budroni
- Department
of Chemical, Physical, Mathematical and Natural Sciences, University of Sassari, Via Vienna 2, 07100 Sassari, Italy
| | - L. Lemaigre
- Université
Libre de Bruxelles (ULB), Nonlinear Physical
Chemistry Unit, Faculté des Sciences, CP231, 1050 Brussels, Belgium
| | - D. M. Escala
- Université
Libre de Bruxelles (ULB), Nonlinear Physical
Chemistry Unit, Faculté des Sciences, CP231, 1050 Brussels, Belgium
| | - A. De Wit
- Université
Libre de Bruxelles (ULB), Nonlinear Physical
Chemistry Unit, Faculté des Sciences, CP231, 1050 Brussels, Belgium
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9
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The Boundary between Two Modes of Gas Evolution: Oscillatory (H2 and O2) and Conventional Redox (O2 Only), in the Hydrocarbon/H2O2/Cu(II)/CH3CN System. HYDROGEN 2023. [DOI: 10.3390/hydrogen4010006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
Abstract
During the oxidation of hydrocarbons using hydrogen peroxide solutions, the evolution of gaseous oxygen is a side and undesirable process, in which the consumption of the oxidizer is not associated with the formation of target products. Therefore, no attention is paid to the systematic study of the chemical composition of the gas and the mechanisms of its formation. Filling this gap, the authors discovered a number of new, previously unidentified, interesting facts concerning both gas evolution and the oxidation of hydrocarbons. In a 33% H2O2/Cu2Cl4·2DMG/CH3CN system, where DMG is dimethylglyoxime (Butane-2,3-dione dioxime), and is at 50 °C, evidence of significant evolution of gaseous hydrogen, along with the evolution of gaseous oxygen was found. In the authors’ opinion, which requires additional verification, the ratio of gaseous hydrogen and oxygen in the discussed catalytic system can reach up to 1:1. The conditions in which only gaseous oxygen is formed are selected. Using a number of oxidizable hydrocarbons with the first adiabatic ionization potentials (AIPs) of a wide range of values, it was found that the first stage of such a process of evolving only gaseous oxygen was the single electron transfer from hydrogen peroxide molecules to trinuclear copper clusters with the formation, respectively, of hydrogen peroxide radical cations H2O2•+ and radical anions Cu3Cl5•− (AIP = 5 eV). When the conditions for the implementation of such a single electron transfer mechanism are exhausted, the channel of decomposition of hydrogen peroxide molecules into gaseous hydrogen and oxygen is switched on, which is accompanied by the transition of the system to an oscillatory mode of gas evolution. In some cases, the formation of additional amounts of gaseous products is provided by the catalytically activated decomposition of water molecules into hydrogen and oxygen after the complete consumption of hydrogen peroxide molecules in the reaction of gaseous oxygen evolution. The adiabatic electron affinity of various forms of copper molecules involved in chemical processes is calculated by the density functional theory method.
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10
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Sahoo A, Bhattacharya S, Jana S, Baitalik S. Neural network and decision tree-based machine learning tools to analyse the anion-responsive behaviours of emissive Ru( ii)–terpyridine complexes. Dalton Trans 2023; 52:97-108. [DOI: 10.1039/d2dt03289a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Artificial neural network, adaptive neuro-fuzzy inference and decision tree regression are implemented to analyse the anion-responsive behaviours of emissive Ru(ii)–terpyridine complexes.
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Affiliation(s)
- Anik Sahoo
- Department of Chemistry, Inorganic Chemistry Section, Jadavpur University, Kolkata 700032, India
| | - Sohini Bhattacharya
- Department of Chemistry, Inorganic Chemistry Section, Jadavpur University, Kolkata 700032, India
| | - Subhamoy Jana
- School of Biological Sciences, Indian Association for the Cultivation of Science, Kolkata 700 032, India
| | - Sujoy Baitalik
- Department of Chemistry, Inorganic Chemistry Section, Jadavpur University, Kolkata 700032, India
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11
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Yamada Y, Ito H, Maeda S. Artificial temperature-compensated biological clock using temperature-sensitive Belousov-Zhabotinsky gels. Sci Rep 2022; 12:22436. [PMID: 36575287 PMCID: PMC9794784 DOI: 10.1038/s41598-022-27014-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Accepted: 12/23/2022] [Indexed: 12/28/2022] Open
Abstract
The circadian rhythm is a fundamental physiological function for a wide range of organisms. The molecular machinery for generating rhythms has been elucidated over the last few decades. Nevertheless, the mechanism for temperature compensation of the oscillation period, which is a prominent property of the circadian rhythm, is still controversial. In this study, we propose a new mechanism through a chemically synthetic approach (i.e., we realized temperature compensation by the Belousov-Zhabotinsky (BZ) gels). The BZ gels are prepared by embedding a metal catalyst of the BZ reaction into the gel polymer. We made the body of BZ gels using a temperature-sensitive polymer gel, which enabled temperature compensation of the oscillation by using temperature dependence of volume. Moreover, we constructed a simple mathematical model for the BZ oscillation in temperature-sensitive gels. The model can reproduce temperature compensation of BZ gels, even though all reactions are temperature sensitive according to the Arrhenius rule. Our finding hints that a soft body coupling may be underlying temperature-compensated biological functions, including circadian rhythms.
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Affiliation(s)
- Yuhei Yamada
- Living Systems Materialogy Research Group, International Research Frontiers Initiative, Tokyo Institute of Technology, 4259, Nagatsuta-Cho, Midori-Ku, Yokohama, 226-8501, Japan.
| | - Hiroshi Ito
- Faculty of Design, Kyushu University, 4-9-1 Shiobaru Minami-Ku, Fukuoka, 815-8540, Japan
| | - Shingo Maeda
- Living Systems Materialogy Research Group, International Research Frontiers Initiative, Tokyo Institute of Technology, 4259, Nagatsuta-Cho, Midori-Ku, Yokohama, 226-8501, Japan
- Department of Mechanical Engineering, Tokyo Institute of Technology, 2-12-1 Ookayama Meguro-Ku, Tokyo, 152-8550, Japan
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12
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Kruse J, Sanromán‐Iglesias M, Marauri A, Rivilla I, Grzelczak M. Coupling Reversible Clustering of DNA‐Coated Gold Nanoparticles with Chemothermal Cycloaddition Reaction. CHEMSYSTEMSCHEM 2022. [DOI: 10.1002/syst.202200031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Joscha Kruse
- Donostia International Physics Center (DIPC) Paseo Manuel de Lardizabal 4 20018 Donostia-San Sebastián Spain
- CIC nanoGUNE BRTA Tolosa Hiribidea 76 20018 Donostia-Sebastián Spain
| | - Maria Sanromán‐Iglesias
- Centro de Física de Materiales CSIC-UPV/EHU Paseo Manuel de Lardizabal 5 20018 Donostia San-Sebastián Spain
| | - Aimar Marauri
- Kimika Fakultatea, Euskal Herriko Unibertsitatea (UPV/EHU) Lardizabal Pasealekua 3 20018 Donostia-San Sebastián Spain
| | - Ivan Rivilla
- Donostia International Physics Center (DIPC) Paseo Manuel de Lardizabal 4 20018 Donostia-San Sebastián Spain
- Ikerbasque, Basque Foundation for Science 48013 Bilbao Spain
| | - Marek Grzelczak
- Donostia International Physics Center (DIPC) Paseo Manuel de Lardizabal 4 20018 Donostia-San Sebastián Spain
- Centro de Física de Materiales CSIC-UPV/EHU Paseo Manuel de Lardizabal 5 20018 Donostia San-Sebastián Spain
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13
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Design of a new photochromic oscillator: towards dynamical models of pacemaker neurons. REACTION KINETICS MECHANISMS AND CATALYSIS 2022. [DOI: 10.1007/s11144-021-02122-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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14
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Liu M, Meng C, Yuan L. Modulation of spatiotemporal dynamics in the bromate–sulfite–ferrocyanide reaction system by visible light. RSC Adv 2022; 12:15145-15149. [PMID: 35685187 PMCID: PMC9116188 DOI: 10.1039/d2ra01422j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2022] [Accepted: 05/13/2022] [Indexed: 11/21/2022] Open
Abstract
We have carried out the first systematic study of the effects of visible light on the homogenous dynamics in the bromate–sulfite–ferrocyanide (BSF) reaction. Under flow conditions, the reaction system displayed photoinduction and photoinhibition behavior, and the oscillatory period decreased with the increase of light intensity, which is due to the fact that light irradiation mainly enhanced the negative process and affected the positive feedback. The light effect on positive and negative feedback is studied by analyzing the period length of pH increasing and decreasing in detail. With the increase of light intensity, the period length of pH increasing decreases monotonically, while the period length of pH decreasing changes nonmonotonically. These results suggest that light could be used as a powerful tool to control homogenous dynamics. Results obtained from numerical simulations are in good agreement with experimental data. The BSF reaction system displayed photoinduction and photoinhibition behavior under flow conditions. The oscillatory period decreased as the light irradiation mainly enhanced the negative process and affected the positive feedback.![]()
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Affiliation(s)
- Mengfei Liu
- College of Chemical Engineering, China University of Mining and Technology, Xuzhou 221116, China
| | - Chunxiao Meng
- College of Chemical Engineering, China University of Mining and Technology, Xuzhou 221116, China
| | - Ling Yuan
- College of Chemical Engineering, China University of Mining and Technology, Xuzhou 221116, China
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15
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Koenig TK, Volkamer R, Apel EC, Bresch JF, Cuevas CA, Dix B, Eloranta EW, Fernandez RP, Hall SR, Hornbrook RS, Pierce RB, Reeves JM, Saiz-Lopez A, Ullmann K. Ozone depletion due to dust release of iodine in the free troposphere. SCIENCE ADVANCES 2021; 7:eabj6544. [PMID: 34936464 PMCID: PMC8694599 DOI: 10.1126/sciadv.abj6544] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2021] [Accepted: 11/03/2021] [Indexed: 06/03/2023]
Abstract
Iodine is an atmospheric trace element emitted from oceans that efficiently destroys ozone (O3). Low O3 in airborne dust layers is frequently observed but poorly understood. We show that dust is a source of gas-phase iodine, indicated by aircraft observations of iodine monoxide (IO) radicals inside lofted dust layers from the Atacama and Sechura Deserts that are up to a factor of 10 enhanced over background. Gas-phase iodine photochemistry, commensurate with observed IO, is needed to explain the low O3 inside these dust layers (below 15 ppbv; up to 75% depleted). The added dust iodine can explain decreases in O3 of 8% regionally and affects surface air quality. Our data suggest that iodate reduction to form volatile iodine species is a missing process in the geochemical iodine cycle and presents an unrecognized aeolian source of iodine. Atmospheric iodine has tripled since 1950 and affects ozone layer recovery and particle formation.
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Affiliation(s)
- Theodore K. Koenig
- Department of Chemistry, University of Colorado Boulder, Boulder, CO, USA
- Cooperative Institute for Research in Environmental Sciences, Boulder, CO, USA
| | - Rainer Volkamer
- Department of Chemistry, University of Colorado Boulder, Boulder, CO, USA
- Cooperative Institute for Research in Environmental Sciences, Boulder, CO, USA
| | - Eric C. Apel
- Atmospheric Chemistry Observations & Modeling Laboratory, National Center for Atmospheric Research, Boulder, CO, USA
| | - James F. Bresch
- Mesoscale & Microscale Meteorology Laboratory, National Center for Atmospheric Research, Boulder, CO, USA
| | - Carlos A. Cuevas
- Department of Atmospheric Chemistry and Climate, Institute of Physical Chemistry Rocasolano, Spanish National Research Council (CSIC), Madrid, Spain
| | - Barbara Dix
- Department of Chemistry, University of Colorado Boulder, Boulder, CO, USA
- Cooperative Institute for Research in Environmental Sciences, Boulder, CO, USA
| | - Edwin W. Eloranta
- Space Science and Engineering Center, University of Wisconsin, Madison, WI, USA
| | - Rafael P. Fernandez
- Institute for Interdisciplinary Science, National Research Council (ICB-CONICET), FCEN-UNCuyo, Mendoza, Argentina
| | - Samuel R. Hall
- Atmospheric Chemistry Observations & Modeling Laboratory, National Center for Atmospheric Research, Boulder, CO, USA
| | - Rebecca S. Hornbrook
- Atmospheric Chemistry Observations & Modeling Laboratory, National Center for Atmospheric Research, Boulder, CO, USA
| | - R. Bradley Pierce
- The National Environmental Satellite, Data, and Information Service (NESDIS), Madison, WI, USA
| | - J. Michael Reeves
- Earth Observing Laboratory, National Center for Atmospheric Research, Boulder, CO, USA
| | - Alfonso Saiz-Lopez
- Department of Atmospheric Chemistry and Climate, Institute of Physical Chemistry Rocasolano, Spanish National Research Council (CSIC), Madrid, Spain
| | - Kirk Ullmann
- Atmospheric Chemistry Observations & Modeling Laboratory, National Center for Atmospheric Research, Boulder, CO, USA
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16
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Light sensitive Belousov-Zhabotinsky medium accommodates multiple logic gates. Biosystems 2021; 206:104447. [PMID: 34033907 DOI: 10.1016/j.biosystems.2021.104447] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2021] [Revised: 05/18/2021] [Accepted: 05/18/2021] [Indexed: 11/23/2022]
Abstract
Computational functionality has been implemented successfully on chemical reactions in living systems. In the case of Belousov-Zhabotinsky (BZ) reaction, this was achieved by using collision-based techniques and by exploiting the light sensitivity of BZ. In order to unveil the computational capacity of the light sensitive BZ medium and the possibility to implement re-configurable logic, the design of multiple logic gates in a fixed BZ reservoir was investigated. The three basic logic gates (namely NOT, OR and AND) were studied to prove the Turing completeness of the architecture. Namely, all possible Boolean functions can be implemented as a combination of these logic gates. Nonetheless, a more complicated logic function was investigated, aiming to illustrate further capabilities of a fixed size BZ reservoir. The experiments executed within this study were implemented with a Cellular Automata (CA)-based model of the Oregonator equations that simulate excitation and wave propagation on a light sensitive BZ thin film. Given that conventional or von Neumann architecture computations is proved possible on the proposed configuration, the next step would be the realization of unconventional types of computation, such as neuromorphic and fuzzy computations, where the chemical substrate may prove more efficient than silicon.
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17
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Przyczyna D, Suchecki M, Adamatzky A, Szaciłowski K. Towards Embedded Computation with Building Materials. MATERIALS 2021; 14:ma14071724. [PMID: 33807438 PMCID: PMC8038044 DOI: 10.3390/ma14071724] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/18/2021] [Revised: 03/23/2021] [Accepted: 03/27/2021] [Indexed: 01/14/2023]
Abstract
We present results showing the capability of concrete-based information processing substrate in the signal classification task in accordance with in materio computing paradigm. As the Reservoir Computing is a suitable model for describing embedded in materio computation, we propose that this type of presented basic construction unit can be used as a source for “reservoir of states” necessary for simple tuning of the readout layer. We present an electrical characterization of the set of samples with different additive concentrations followed by a dynamical analysis of selected specimens showing fingerprints of memfractive properties. As part of dynamic analysis, several fractal dimensions and entropy parameters for the output signal were analyzed to explore the richness of the reservoir configuration space. In addition, to investigate the chaotic nature and self-affinity of the signal, Lyapunov exponents and Detrended Fluctuation Analysis exponents were calculated. Moreover, on the basis of obtained parameters, classification of the signal waveform shapes can be performed in scenarios explicitly tuned for a given device terminal.
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Affiliation(s)
- Dawid Przyczyna
- Academic Centre for Materials and Nanotechnology, AGH University of Science and Technology, Mickiewicza 30, 30-059 Krakow, Poland;
- Faculty of Physics and Applied Computer Science, AGH University of Science and Technology, Mickiewicza 30, 30-059 Krakow, Poland
- Correspondence: (D.P.); (K.S.)
| | - Maciej Suchecki
- Academic Centre for Materials and Nanotechnology, AGH University of Science and Technology, Mickiewicza 30, 30-059 Krakow, Poland;
- Faculty of Physics and Applied Computer Science, AGH University of Science and Technology, Mickiewicza 30, 30-059 Krakow, Poland
| | - Andrew Adamatzky
- Department of Computer Science and Creative Technologies, Unconventional Computing Lab, University of the West of England, Bristol BS16 1QY, UK;
| | - Konrad Szaciłowski
- Academic Centre for Materials and Nanotechnology, AGH University of Science and Technology, Mickiewicza 30, 30-059 Krakow, Poland;
- Correspondence: (D.P.); (K.S.)
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Buhse T, Cruz JM, Noble-Terán ME, Hochberg D, Ribó JM, Crusats J, Micheau JC. Spontaneous Deracemizations. Chem Rev 2021; 121:2147-2229. [DOI: 10.1021/acs.chemrev.0c00819] [Citation(s) in RCA: 54] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Thomas Buhse
- Centro de Investigaciones Químicas−IICBA, Universidad Autónoma del Estado de Morelos, Avenida Universidad 1001, 62209 Cuernavaca, Morelos Mexico
| | - José-Manuel Cruz
- Facultad de Ciencias en Física y Matemáticas, Universidad Autónoma de Chiapas, Tuxtla Gutiérrez, Chiapas 29050, Mexico
| | - María E. Noble-Terán
- Centro de Investigaciones Químicas−IICBA, Universidad Autónoma del Estado de Morelos, Avenida Universidad 1001, 62209 Cuernavaca, Morelos Mexico
| | - David Hochberg
- Department of Molecular Evolution, Centro de Astrobiología (CSIC-INTA), Carretera Ajalvir, Km. 4, 28850 Torrejón de Ardoz, Madrid Spain
| | - Josep M. Ribó
- Institut de Ciències del Cosmos (IEEC-ICC) and Departament de Química Inorgànica i Orgànica, Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Catalunya Spain
| | - Joaquim Crusats
- Institut de Ciències del Cosmos (IEEC-ICC) and Departament de Química Inorgànica i Orgànica, Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Catalunya Spain
| | - Jean-Claude Micheau
- Laboratoire des IMRCP, UMR au CNRS No. 5623, Université Paul Sabatier, F-31062 Toulouse Cedex, France
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