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For: Kuznetsov YG, Gurnon JR, Van Etten JL, McPherson A. Atomic force microscopy investigation of a chlorella virus, PBCV-1. J Struct Biol 2005;149:256-63. [PMID: 15721579 DOI: 10.1016/j.jsb.2004.10.007] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2004] [Indexed: 11/24/2022]
Number Cited by Other Article(s)
1
McCormick RA, Ralbovsky NM, Gilbraith W, Smith JP, Booksh KS. Analyzing atomic force microscopy images of virus-like particles by expectation-maximization. NPJ Vaccines 2024;9:112. [PMID: 38902288 PMCID: PMC11190231 DOI: 10.1038/s41541-024-00871-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2023] [Accepted: 03/28/2024] [Indexed: 06/22/2024]  Open
2
Shtykova EV, Dubrovin EV, Ksenofontov AL, Gifer PK, Petoukhov MV, Tokhtar VK, Sapozhnikova IM, Stavrianidi AN, Kordyukova LV, Batishchev OV. Structural Insights into Plant Viruses Revealed by Small-Angle X-ray Scattering and Atomic Force Microscopy. Viruses 2024;16:427. [PMID: 38543792 PMCID: PMC10975137 DOI: 10.3390/v16030427] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Revised: 03/05/2024] [Accepted: 03/08/2024] [Indexed: 05/23/2024]  Open
3
Evans CT, Payton O, Picco L, Allen MJ. Visualisation of microalgal-viral interactions by high-speed atomic force microscopy. FRONTIERS IN VIROLOGY 2023. [DOI: 10.3389/fviro.2023.1111335] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/06/2023]
4
Turzynski V, Monsees I, Moraru C, Probst AJ. Imaging Techniques for Detecting Prokaryotic Viruses in Environmental Samples. Viruses 2021;13:2126. [PMID: 34834933 PMCID: PMC8622608 DOI: 10.3390/v13112126] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2021] [Revised: 10/15/2021] [Accepted: 10/18/2021] [Indexed: 12/28/2022]  Open
5
Kiss B, Mudra D, Török G, Mártonfalvi Z, Csík G, Herényi L, Kellermayer M. Single-particle virology. Biophys Rev 2020;12:1141-1154. [PMID: 32880826 PMCID: PMC7471434 DOI: 10.1007/s12551-020-00747-9] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2020] [Accepted: 08/18/2020] [Indexed: 01/02/2023]  Open
6
Evans CT, Payton O, Picco L, Allen MJ. Algal Viruses: The (Atomic) Shape of Things to Come. Viruses 2018;10:E490. [PMID: 30213102 PMCID: PMC6165301 DOI: 10.3390/v10090490] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2018] [Revised: 08/30/2018] [Accepted: 09/07/2018] [Indexed: 01/15/2023]  Open
7
Chen SWW, Teulon JM, Godon C, Pellequer JL. Atomic force microscope, molecular imaging, and analysis. J Mol Recognit 2015. [PMID: 26224520 DOI: 10.1002/jmr.2491] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
8
Havlik M, Marchetti-Deschmann M, Friedbacher G, Messner P, Winkler W, Perez-Burgos L, Tauer C, Allmaier G. Development of a bio-analytical strategy for characterization of vaccine particles combining SEC and nanoES GEMMA. Analyst 2015;139:1412-9. [PMID: 24473104 DOI: 10.1039/c3an01962d] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
9
Sirotkin S, Mermet A, Bergoin M, Ward V, Van Etten JL. Viruses as nanoparticles: structure versus collective dynamics. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014;90:022718. [PMID: 25215769 DOI: 10.1103/physreve.90.022718] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2014] [Indexed: 06/03/2023]
10
Klose T, Rossmann MG. Structure of large dsDNA viruses. Biol Chem 2014;395:711-9. [PMID: 25003382 PMCID: PMC4307781 DOI: 10.1515/hsz-2014-0145] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2014] [Accepted: 04/23/2014] [Indexed: 11/15/2022]
11
Paramecium bursaria chlorella virus 1 proteome reveals novel architectural and regulatory features of a giant virus. J Virol 2012;86:8821-34. [PMID: 22696644 DOI: 10.1128/jvi.00907-12] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
12
Wulfmeyer T, Polzer C, Hiepler G, Hamacher K, Shoeman R, Dunigan DD, Van Etten JL, Lolicato M, Moroni A, Thiel G, Meckel T. Structural organization of DNA in chlorella viruses. PLoS One 2012;7:e30133. [PMID: 22359540 PMCID: PMC3281028 DOI: 10.1371/journal.pone.0030133] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2011] [Accepted: 12/09/2011] [Indexed: 11/19/2022]  Open
13
McPherson A, Kuznetsov YG. Atomic force microscopy investigation of viruses. Methods Mol Biol 2011;736:171-95. [PMID: 21660728 DOI: 10.1007/978-1-61779-105-5_12] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/04/2023]
14
Three-dimensional structure and function of the Paramecium bursaria chlorella virus capsid. Proc Natl Acad Sci U S A 2011;108:14837-42. [PMID: 21873222 DOI: 10.1073/pnas.1107847108] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]  Open
15
Kuznetsov YG, McPherson A. Atomic force microscopy in imaging of viruses and virus-infected cells. Microbiol Mol Biol Rev 2011;75:268-85. [PMID: 21646429 PMCID: PMC3122623 DOI: 10.1128/mmbr.00041-10] [Citation(s) in RCA: 88] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]  Open
16
Kuznetsov YG, Chang SC, McPherson A. Investigation of bacteriophage T4 by atomic force microscopy. BACTERIOPHAGE 2011;1:165-173. [PMID: 22164350 PMCID: PMC3225781 DOI: 10.4161/bact.1.3.17650] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2011] [Revised: 07/16/2011] [Accepted: 08/06/2011] [Indexed: 11/19/2022]
17
Kuznetsov YG, Xiao C, Sun S, Raoult D, Rossmann M, McPherson A. Atomic force microscopy investigation of the giant mimivirus. Virology 2010;404:127-37. [DOI: 10.1016/j.virol.2010.05.007] [Citation(s) in RCA: 66] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
18
Zink M, Grubmüller H. Primary changes of the mechanical properties of Southern Bean Mosaic Virus upon calcium removal. Biophys J 2010;98:687-95. [PMID: 20159165 DOI: 10.1016/j.bpj.2009.10.047] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2009] [Revised: 10/29/2009] [Accepted: 10/30/2009] [Indexed: 01/21/2023]  Open
19
Thiel G, Moroni A, Dunigan D, Van Etten JL. Initial Events Associated with Virus PBCV-1 Infection of Chlorella NC64A. PROGRESS IN BOTANY. FORTSCHRITTE DER BOTANIK 2010;71:169-183. [PMID: 21152366 PMCID: PMC2997699 DOI: 10.1007/978-3-642-02167-1_7] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
20
Giocondi MC, Ronzon F, Nicolai MC, Dosset P, Milhiet PE, Chevalier M, Le Grimellec C. Organization of influenza A virus envelope at neutral and low pH. J Gen Virol 2009;91:329-38. [DOI: 10.1099/vir.0.015156-0] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
21
Bigot Y, Renault S, Nicolas J, Moundras C, Demattei MV, Samain S, Bideshi DK, Federici BA. Symbiotic virus at the evolutionary intersection of three types of large DNA viruses; iridoviruses, ascoviruses, and ichnoviruses. PLoS One 2009;4:e6397. [PMID: 19636425 PMCID: PMC2712680 DOI: 10.1371/journal.pone.0006397] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2009] [Accepted: 05/31/2009] [Indexed: 11/28/2022]  Open
22
Xiao C, Kuznetsov YG, Sun S, Hafenstein SL, Kostyuchenko VA, Chipman PR, Suzan-Monti M, Raoult D, McPherson A, Rossmann MG. Structural studies of the giant mimivirus. PLoS Biol 2009;7:e92. [PMID: 19402750 PMCID: PMC2671561 DOI: 10.1371/journal.pbio.1000092] [Citation(s) in RCA: 151] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2008] [Accepted: 03/11/2009] [Indexed: 01/04/2023]  Open
23
Zink M, Grubmüller H. Mechanical properties of the icosahedral shell of southern bean mosaic virus: a molecular dynamics study. Biophys J 2009;96:1350-63. [PMID: 19217853 PMCID: PMC2717248 DOI: 10.1016/j.bpj.2008.11.028] [Citation(s) in RCA: 90] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2008] [Accepted: 11/19/2008] [Indexed: 12/16/2022]  Open
24
Trache A, Meininger GA. Atomic force microscopy (AFM). ACTA ACUST UNITED AC 2008;Chapter 2:Unit 2C.2. [PMID: 18770536 DOI: 10.1002/9780471729259.mc02c02s8] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
25
AFM of biological complexes: what can we learn? Curr Opin Colloid Interface Sci 2008;13:351-367. [PMID: 19802337 DOI: 10.1016/j.cocis.2008.01.004] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
26
Atomic force microscopy investigation of vaccinia virus structure. J Virol 2008;82:7551-66. [PMID: 18508898 DOI: 10.1128/jvi.00016-08] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]  Open
27
Kuznetsov YG, Ulbrich P, Haubova S, Ruml T, McPherson A. Atomic force microscopy investigation of Mason-Pfizer monkey virus and human immunodeficiency virus type 1 reassembled particles. Virology 2006;360:434-46. [PMID: 17123565 DOI: 10.1016/j.virol.2006.10.015] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2006] [Revised: 09/18/2006] [Accepted: 10/06/2006] [Indexed: 11/22/2022]
28
Kuznetsov YG, McPherson A. Identification of DNA and RNA from retroviruses using ribonuclease A. SCANNING 2006;28:278-81. [PMID: 17063767 DOI: 10.1002/sca.4950280506] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
29
Onimatsu H, Suganuma K, Uenoyama S, Yamada T. C-terminal repetitive motifs in Vp130 present at the unique vertex of the Chlorovirus capsid are essential for binding to the host Chlorella cell wall. Virology 2006;353:433-42. [PMID: 16870225 DOI: 10.1016/j.virol.2006.06.010] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2006] [Revised: 04/29/2006] [Accepted: 06/14/2006] [Indexed: 11/16/2022]
30
Kienberger F, Pastushenko VP, Kada G, Puntheeranurak T, Chtcheglova L, Riethmueller C, Rankl C, Ebner A, Hinterdorfer P. Improving the contrast of topographical AFM images by a simple averaging filter. Ultramicroscopy 2006;106:822-8. [PMID: 16675120 DOI: 10.1016/j.ultramic.2005.11.013] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2005] [Accepted: 11/17/2005] [Indexed: 11/17/2022]
31
Lin S, Lee CK, Lee SY, Kao CL, Lin CW, Wang AB, Hsu SM, Huang LS. Surface ultrastructure of SARS coronavirus revealed by atomic force microscopy. Cell Microbiol 2006;7:1763-70. [PMID: 16309462 PMCID: PMC7162285 DOI: 10.1111/j.1462-5822.2005.00593.x] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
32
Yamada T, Onimatsu H, Van Etten JL. Chlorella viruses. Adv Virus Res 2006;66:293-336. [PMID: 16877063 PMCID: PMC1955756 DOI: 10.1016/s0065-3527(06)66006-5] [Citation(s) in RCA: 97] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
33
Kuznetsov YG, Zhang M, Menees TM, McPherson A, Sandmeyer S. Investigation by atomic force microscopy of the structure of Ty3 retrotransposon particles. J Virol 2005;79:8032-45. [PMID: 15956549 PMCID: PMC1143757 DOI: 10.1128/jvi.79.13.8032-8045.2005] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]  Open
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