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Anneberg TJ, O'Neill EM, Ashman TL, Turcotte MM. Polyploidy impacts population growth and competition with diploids: multigenerational experiments reveal key life-history trade-offs. THE NEW PHYTOLOGIST 2023; 238:1294-1304. [PMID: 36740596 DOI: 10.1111/nph.18794] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Accepted: 01/24/2023] [Indexed: 06/18/2023]
Abstract
Ecological theory predicts that early generation polyploids ('neopolyploids') should quickly go extinct owing to the disadvantages of rarity and competition with their diploid progenitors. However, polyploids persist in natural habitats globally. This paradox has been addressed theoretically by recognizing that reproductive assurance of neopolyploids and niche differentiation can promote establishment. Despite this, the direct effects of polyploidy at the population level remain largely untested despite establishment being an intrinsically population-level process. We conducted population-level experiments where life-history investment in current and future growth was tracked in four lineage pairs of diploids and synthetic autotetraploids of the aquatic plant Spirodela polyrhiza. Population growth was evaluated with and without competition between diploids and neopolyploids across a range of nutrient treatments. Although neopolyploid populations produce more biomass, they reach lower population sizes and have reduced carrying capacities when growing alone or in competition across all nutrient treatments. Thus, contrary to individual-level studies, our population-level data suggest that neopolyploids are competitively inferior to diploids. Conversely, neopolyploid populations have greater investment in dormant propagule production than diploids. Our results show that neopolyploid populations should not persist based on current growth dynamics, but high potential future growth may allow polyploids to establish in subsequent seasons.
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Affiliation(s)
- Thomas J Anneberg
- Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, 15260, USA
| | - Elizabeth M O'Neill
- Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, 15260, USA
| | - Tia-Lynn Ashman
- Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, 15260, USA
| | - Martin M Turcotte
- Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, 15260, USA
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2
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Meyer I, Steinmetz B, Shnerb NM. How the storage effect and the number of temporal niches affect biodiversity in stochastic and seasonal environments. PLoS Comput Biol 2022; 18:e1009971. [PMID: 35344537 PMCID: PMC8989364 DOI: 10.1371/journal.pcbi.1009971] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2021] [Revised: 04/07/2022] [Accepted: 02/25/2022] [Indexed: 12/04/2022] Open
Abstract
Temporal environmental variations affect diversity in communities of competing populations. In particular, the covariance between competition and environment is known to facilitate invasions of rare species via the storage effect. Here we present a quantitative study of the effects of temporal variations in two-species and in diverse communities. Four scenarios are compared: environmental variations may be either periodic (seasonal) or stochastic, and the dynamics may support the storage effect (global competition) or not (local competition). In two-species communities, coexistence is quantified via the mean time to absorption, and we show that stochastic variations yield shorter persistence time because they allow for rare sequences of bad years. In diverse communities, where the steady-state reflects a colonization-extinction equilibrium, the actual number of temporal niches is shown to play a crucial role. When this number is large, the same trends hold: storage effect and periodic variations increase both species richness and the evenness of the community. Surprisingly, when the number of temporal niches is small global competition acts to decrease species richness and evenness, as it focuses the competition to specific periods, thus increasing the effective fitness differences. One of the major challenges of community ecology and population genetics is the understanding of the factors that protect biodiversity. Surprisingly, in many generic cases temporal environmental variations (and the abundance fluctuations associated with it) promote the coexistence of competing species and facilitate genetic polymorphism. Here we present a detailed and quantitative comparison between the stabilizing (and the destabilizing) effects of periodic (seasonal) and stochastic temporal variations. When the number of species is small, we show that persistence times under periodic variations are much longer than the persistence times in a stochastic environment. However, environmental variations facilitate coexistence only when the number of temporal niches is larger than the number of species, whereas in the opposite case the same mechanism acts to increase competition and to decrease species richness. Since it is reasonable to expect the number of temporal niches under seasonal variations to be typically smaller than the corresponding number in stochastic environments, stochastic variations provide a more plausible explanation for the apparent stability of high-diversity assemblages.
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Affiliation(s)
- Immanuel Meyer
- Department of Physics, Bar-Ilan University, Ramat-Gan, Israel
| | - Bnaya Steinmetz
- Department of Physics, Bar-Ilan University, Ramat-Gan, Israel
| | - Nadav M. Shnerb
- Department of Physics, Bar-Ilan University, Ramat-Gan, Israel
- * E-mail:
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Morawska LP, Hernandez-Valdes JA, Kuipers OP. Diversity of bet-hedging strategies in microbial communities-Recent cases and insights. WIREs Mech Dis 2022; 14:e1544. [PMID: 35266649 PMCID: PMC9286555 DOI: 10.1002/wsbm.1544] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2021] [Revised: 10/05/2021] [Accepted: 10/07/2021] [Indexed: 12/12/2022]
Abstract
Microbial communities are continuously exposed to unpredictable changes in their environment. To thrive in such dynamic habitats, microorganisms have developed the ability to readily switch phenotypes, resulting in a number of differently adapted subpopulations expressing various traits. In evolutionary biology, a particular case of phenotypic heterogeneity that evolved in an unpredictably changing environment has been defined as bet‐hedging. Bet‐hedging is a risk‐spreading strategy where isogenic populations stochastically (randomly) diversify their phenotypes, often resulting in maladapted individuals that suffer lower reproductive success. This fitness trade‐off in a specific environment may have a selective advantage upon the sudden environmental shift. Thus, a bet‐hedging strategy allows populations to persist in very dynamic habitats, but with a particular fitness cost. In recent years, numerous examples of phenotypic heterogeneity in different microorganisms have been observed, some suggesting bet‐hedging. Here, we highlight the latest reports concerning bet‐hedging phenomena in various microorganisms to show how versatile this strategy is within the microbial realms. This article is categorized under:Infectious Diseases > Molecular and Cellular Physiology
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Affiliation(s)
- Luiza P Morawska
- Department of Molecular Genetics, Groningen Biomolecular Sciences and Biotechnology Institute, Groningen, The Netherlands
| | - Jhonatan A Hernandez-Valdes
- Department of Molecular Genetics, Groningen Biomolecular Sciences and Biotechnology Institute, Groningen, The Netherlands
| | - Oscar P Kuipers
- Department of Molecular Genetics, Groningen Biomolecular Sciences and Biotechnology Institute, Groningen, The Netherlands
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4
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Andreguetto Maciel G, Martinez-Garcia R. Enhanced species coexistence in Lotka-Volterra competition models due to nonlocal interactions. J Theor Biol 2021; 530:110872. [PMID: 34425135 DOI: 10.1016/j.jtbi.2021.110872] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Revised: 07/13/2021] [Accepted: 08/15/2021] [Indexed: 11/19/2022]
Abstract
We introduce and analyze a spatial Lotka-Volterra competition model with local and nonlocal interactions. We study two alternative classes of nonlocal competition that differ in how each species' characteristics determine the range of the nonlocal interactions. In both cases, nonlocal interactions can create spatial patterns of population densities in which highly populated clumps alternate with unpopulated regions. These non-populated regions provide spatial niches for a weaker competitor to establish in the community and persist in conditions in which local models predict competitive exclusion. Moreover, depending on the balance between local and nonlocal competition intensity, the clumps of the weaker competitor vary from M-like structures with higher densities of individuals accumulating at the edges of each clump to triangular structures with most individuals occupying their centers. These results suggest that long-range competition, through the creation of spatial patterns in population densities, might be a key driving force behind the rich diversity of species observed in natural ecological communities.
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Affiliation(s)
- Gabriel Andreguetto Maciel
- ICTP South American Institute for Fundamental Research & Instituto de Física Teórica, Universidade Estadual Paulista - UNESP, Rua Dr. Bento Teobaldo Ferraz 271, Bloco 2 - Barra Funda, 01140-070 São Paulo, SP, Brazil
| | - Ricardo Martinez-Garcia
- ICTP South American Institute for Fundamental Research & Instituto de Física Teórica, Universidade Estadual Paulista - UNESP, Rua Dr. Bento Teobaldo Ferraz 271, Bloco 2 - Barra Funda, 01140-070 São Paulo, SP, Brazil.
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5
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Miller AK, Brown JS, Enderling H, Basanta D, Whelan CJ. The Evolutionary Ecology of Dormancy in Nature and in Cancer. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.676802] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023] Open
Abstract
Dormancy is an inactive period of an organism’s life cycle that permits it to survive through phases of unfavorable conditions in highly variable environments. Dormancy is not binary. There is a continuum of dormancy phenotypes that represent some degree of reduced metabolic activity (hypometabolism), reduced feeding, and reduced reproduction or proliferation. Similarly, normal cells and cancer cells exhibit a range of states from quiescence to long-term dormancy that permit survival in adverse environmental conditions. In contrast to organismal dormancy, which entails a reduction in metabolism, dormancy in cells (both normal and cancer) is primarily characterized by lack of cell division. “Cancer dormancy” also describes a state characterized by growth stagnation, which could arise from cells that are not necessarily hypometabolic or non-proliferative. This inconsistent terminology leads to confusion and imprecision that impedes progress in interdisciplinary research between ecologists and cancer biologists. In this paper, we draw parallels and contrasts between dormancy in cancer and other ecosystems in nature, and discuss the potential for studies in cancer to provide novel insights into the evolutionary ecology of dormancy.
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Martinez-Garcia R, López C, Vazquez F. Species exclusion and coexistence in a noisy voter model with a competition-colonization tradeoff. Phys Rev E 2021; 103:032406. [PMID: 33862773 DOI: 10.1103/physreve.103.032406] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2020] [Accepted: 02/11/2021] [Indexed: 12/26/2022]
Abstract
We introduce an asymmetric noisy voter model to study the joint effect of immigration and a competition-dispersal tradeoff in the dynamics of two species competing for space in regular lattices. Individuals of one species can invade a nearest-neighbor site in the lattice, while individuals of the other species are able to invade sites at any distance but are less competitive locally, i.e., they establish with a probability g≤1. The model also accounts for immigration, modeled as an external noise that may spontaneously replace an individual at a lattice site by another individual of the other species. This combination of mechanisms gives rise to a rich variety of outcomes for species competition, including exclusion of either species, monostable coexistence of both species at different population proportions, and bistable coexistence with proportions of populations that depend on the initial condition. Remarkably, in the bistable phase, the system undergoes a discontinuous transition as the intensity of immigration overcomes a threshold, leading to a half loop dynamics associated to a cusp catastrophe, which causes the irreversible loss of the species with the shortest dispersal range.
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Affiliation(s)
- Ricardo Martinez-Garcia
- ICTP-South American Institute for Fundamental Research-Instituto de Física Teórica da UNESP, Rua Dr. Bento Teobaldo Ferraz 271, 01140-070 São Paulo, Brazil
| | - Cristóbal López
- IFISC (CSIC-UIB), Instituto de Física Interdisciplinar y Sistemas Complejos, Campus Universitat de les Illes Balears, E-07122 Palma de Mallorca, Spain
| | - Federico Vazquez
- Instituto de Cálculo, FCEN, Universidad de Buenos Aires and CONICET, C1428EGA Buenos Aires, Argentina
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7
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Abstract
Loners—individuals out of sync with a coordinated majority—occur frequently in nature. Are loners incidental byproducts of large-scale coordination attempts, or are they part of a mosaic of life-history strategies? Here, we provide empirical evidence of naturally occurring heritable variation in loner behavior in the model social amoeba Dictyostelium discoideum. We propose that Dictyostelium loners—cells that do not join the multicellular life stage—arise from a dynamic population-partitioning process, the result of each cell making a stochastic, signal-based decision. We find evidence that this imperfectly synchronized multicellular development is affected by both abiotic (environmental porosity) and biotic (signaling) factors. Finally, we predict theoretically that when a pair of strains differing in their partitioning behavior coaggregate, cross-signaling impacts slime-mold diversity across spatiotemporal scales. Our findings suggest that loners could be critical to understanding collective and social behaviors, multicellular development, and ecological dynamics in D. discoideum. More broadly, across taxa, imperfect coordination of collective behaviors might be adaptive by enabling diversification of life-history strategies. Loners (individuals out of sync with a coordinated majority) occur frequently in nature and are generally assumed to be incidental by-products of imperfect coordination attempts. Experimental and theoretical work on the slime mold Dictyostelium discoideum suggests that "lonerism" might actually be an alternative life-history strategy.
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Bruijning M, Metcalf CJE, Jongejans E, Ayroles JF. The Evolution of Variance Control. Trends Ecol Evol 2020; 35:22-33. [PMID: 31519463 PMCID: PMC7482585 DOI: 10.1016/j.tree.2019.08.005] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2019] [Revised: 08/08/2019] [Accepted: 08/12/2019] [Indexed: 12/12/2022]
Abstract
Genetically identical individuals can be phenotypically variable, even in constant environmental conditions. The ubiquity of this phenomenon, known as 'intra-genotypic variability', is increasingly evident and the relevant mechanistic underpinnings are beginning to be understood. In parallel, theory has delineated a number of formal expectations for contexts in which such a feature would be adaptive. Here, we review empirical evidence across biological systems and theoretical expectations, including nonlinear averaging and bet hedging. We synthesize existing results to illustrate the dependence of selection outcomes both on trait characteristics, features of environmental variability, and species' demographic context. We conclude by discussing ways to bridge the gap between empirical evidence of intra-genotypic variability, studies demonstrating its genetic component, and evidence that it is adaptive.
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Affiliation(s)
- Marjolein Bruijning
- Department of Animal Ecology and Physiology, Radboud University, 6500, GL, Nijmegen, The Netherlands; Department of Ecology and Evolutionary Biology, Princeton University, 08540 Princeton, NJ, USA
| | - C Jessica E Metcalf
- Department of Ecology and Evolutionary Biology, Princeton University, 08540 Princeton, NJ, USA
| | - Eelke Jongejans
- Department of Animal Ecology and Physiology, Radboud University, 6500, GL, Nijmegen, The Netherlands
| | - Julien F Ayroles
- Department of Ecology and Evolutionary Biology, Princeton University, 08540 Princeton, NJ, USA.
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9
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Colombo EH, Martínez-García R, López C, Hernández-García E. Spatial eco-evolutionary feedbacks mediate coexistence in prey-predator systems. Sci Rep 2019; 9:18161. [PMID: 31796799 PMCID: PMC6890681 DOI: 10.1038/s41598-019-54510-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2019] [Accepted: 11/15/2019] [Indexed: 12/05/2022] Open
Abstract
Eco-evolutionary frameworks can explain certain features of communities in which ecological and evolutionary processes occur over comparable timescales. Here, we investigate whether an evolutionary dynamics may interact with the spatial structure of a prey-predator community in which both species show limited mobility and predator perceptual ranges are subject to natural selection. In these conditions, our results unveil an eco-evolutionary feedback between species spatial mixing and predators perceptual range: different levels of mixing select for different perceptual ranges, which in turn reshape the spatial distribution of prey and its interaction with predators. This emergent pattern of interspecific interactions feeds back to the efficiency of the various perceptual ranges, thus selecting for new ones. Finally, since prey-predator mixing is the key factor that regulates the intensity of predation, we explore the community-level implications of such feedback and show that it controls both coexistence times and species extinction probabilities.
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Affiliation(s)
- Eduardo H Colombo
- IFISC (CSIC-UIB), Campus Universitat Illes Balears, 07122, Palma de Mallorca, Spain.
| | - Ricardo Martínez-García
- Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ, 08544, USA
- ICTP-South American Institute for Fundamental Research - Instítuto de Física Teórica da UNESP, Rua Dr. Bento Teobaldo Ferraz 271, 01140-070, São Paulo, Brazil
| | - Cristóbal López
- IFISC (CSIC-UIB), Campus Universitat Illes Balears, 07122, Palma de Mallorca, Spain
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Jerney J, Ahonen SA, Hakanen P, Suikkanen S, Kremp A. Generalist Life Cycle Aids Persistence of Alexandrium ostenfeldii (Dinophyceae) in Seasonal Coastal Habitats of the Baltic Sea. JOURNAL OF PHYCOLOGY 2019; 55:1226-1238. [PMID: 31520419 PMCID: PMC6916352 DOI: 10.1111/jpy.12919] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2019] [Accepted: 08/29/2019] [Indexed: 05/07/2023]
Abstract
In seasonal environments, strong gradients of environmental parameters can shape life cycles of phytoplankton. Depending on the rate of environmental fluctuation, specialist or generalist strategies may be favored, potentially affecting life cycle transitions. The present study examined life cycle transitions of the toxin producing Baltic dinoflagellate Alexandrium ostenfeldii and their regulation by environmental factors (temperature and nutrients). This investigation aimed to determine whether genetic recombination of different strains is required for resting cyst formation and whether newly formed cysts are dormant. Field data (temperature and salinity) and sediment surface samples were collected from a site with recurrent blooms and germination and encystment experiments were conducted under controlled laboratory conditions. Results indicate a lack of seasonal germination pattern, set by an endogenous rhythm, as commonly found with other dinoflagellates from the Baltic Sea. Germination of quiescent cysts was triggered by temperatures exceeding 10°C and combined nutrient limitation of nitrogen and phosphorus or a drop in temperature from 16 to 10°C triggered encystment most efficiently. Genetic recombination was not mandatory for the formation of resting cysts, but supported higher numbers of resistant cysts and enhanced germination capacity after a resting period. Findings from this study confirm that A. ostenfeldii follows a generalist germination and cyst formation strategy, driven by strong seasonality, which may support its persistence and possibly expansion in marginal environments in the future, if higher temperatures facilitate a longer growth season.
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Affiliation(s)
- Jacqueline Jerney
- Marine Research CenterFinnish Environment InstituteHelsinki00790Finland
- Tvärminne Zoological StationUniversity of HelsinkiHanko10900Finland
| | | | - Päivi Hakanen
- Marine Research CenterFinnish Environment InstituteHelsinki00790Finland
| | - Sanna Suikkanen
- Marine Research CenterFinnish Environment InstituteHelsinki00790Finland
| | - Anke Kremp
- Marine Research CenterFinnish Environment InstituteHelsinki00790Finland
- Leibniz‐Institut für Ostseeforschung WarnemündeRostock18119Germany
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12
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Ray SK, Valentini G, Shah P, Haque A, Reid CR, Weber GF, Garnier S. Information Transfer During Food Choice in the Slime Mold Physarum polycephalum. Front Ecol Evol 2019. [DOI: 10.3389/fevo.2019.00067] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
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14
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Martínez-García R, Tarnita CE. Lack of Ecological and Life History Context Can Create the Illusion of Social Interactions in Dictyostelium discoideum. PLoS Comput Biol 2016; 12:e1005246. [PMID: 27977666 PMCID: PMC5157950 DOI: 10.1371/journal.pcbi.1005246] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2016] [Accepted: 11/14/2016] [Indexed: 12/13/2022] Open
Abstract
Studies of social microbes often focus on one fitness component (reproductive success within the social complex), with little information about or attention to other stages of the life cycle or the ecological context. This can lead to paradoxical results. The life cycle of the social amoeba Dictyostelium discoideum includes a multicellular stage in which not necessarily clonal amoebae aggregate upon starvation to form a possibly chimeric (genetically heterogeneous) fruiting body made of dead stalk cells and spores. The lab-measured reproductive skew in the spores of chimeras indicates strong social antagonism that should result in low genotypic diversity, which is inconsistent with observations from nature. Two studies have suggested that this inconsistency stems from the one-dimensional assessment of fitness (spore production) and that the solution lies in tradeoffs between multiple life-history traits, e.g.: spore size versus viability; and spore-formation (via aggregation) versus staying vegetative (as non-aggregated cells). We develop an ecologically-grounded, socially-neutral model (i.e. no social interactions between genotypes) for the life cycle of social amoebae in which we theoretically explore multiple non-social life-history traits, tradeoffs and tradeoff-implementing mechanisms. We find that spore production comes at the expense of time to complete aggregation, and, depending on the experimental setup, spore size and viability. Furthermore, experimental results regarding apparent social interactions within chimeric mixes can be qualitatively recapitulated under this neutral hypothesis, without needing to invoke social interactions. This allows for simple potential resolutions to the previously paradoxical results. We conclude that the complexities of life histories, including social behavior and multicellularity, can only be understood in the appropriate multidimensional ecological context, when considering all stages of the life cycle. Fitness in social microbes is often measured in terms of reproductive success in the social stage, with little regard to other stages of the life cycle (e.g. solitary) or to the ecological context. This approach can lead to seemingly paradoxical results that point to complex social interactions (e.g., social cheating) among individuals in the population. However, recent experimental studies in Dictyostelium discoideum, one of the most studied social microbes, have highlighted various tradeoffs among previously ignored non-social traits that should affect fitness. We develop an ecologically-motivated socially-neutral model for the life cycle of D. discoideum that combines these proposed traits and tradeoffs and proposes new ones to determine whether existing observations can be explained without the need to invoke social interactions. We confirm this expectation and conclude that the complexities of social behavior can only be understood in the appropriate ecological context, when considering a complete description of the life cycle.
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Affiliation(s)
- Ricardo Martínez-García
- Department of Ecology and Evolutionary Biology, Princeton University, Princeton NJ, United States of America
| | - Corina E Tarnita
- Department of Ecology and Evolutionary Biology, Princeton University, Princeton NJ, United States of America
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