Combining DFT and QSAR studies for predicting psychotomimetic activity of substituted phenethylamines using statistical methods

A simple and robust model to predict the inhibitory activity of α-glucosidase inhibitors through combined QSAR modeling and molecular docking techniques

Quantitative structure-activity relationships (QSAR) and molecular docking studies have been performed on a series of 35 α-glucosidase inhibitory derivatives. The QSAR models have been developed by genetic algorithm-multiple linear regression (GA-MLR) and least squares-support vector machine (LS-SVM) methods to correlate the conformational descriptors to the inhibitory activity. The obtained models with 5 descriptors were validated and illustrated to be statistically significant. They had desirable prediction based on squared correlation coefficient (R²), cross-validated correlation coefficient (Q²), root-mean-squares error (RMSE) and Fisher (F) parameters (R² = 0.951, Q² = 0.931, RMSE = 0.121, and F = 114.629 for GA-MLR model, and R² = 0.989, Q² = 0.987, RMSE = 0.056 and F = 543.754 for LS-SVM model). The crucial descriptor named DELS was explored to have the highest correlation with the inhibitory activity and thus has been chosen to build a simple model. The QSAR model developed with this mono-descriptor showed appropriate results of the predicted model using LS-SVM method (R² = 0.888, Q² = 0.872, RMSE = 0.185 and F = 221.459). Also, molecular docking which focuses on the interaction between ligands and α-glucosidase in the protein active site considered different binding positions to find the best binding mode. It helped the QSAR study to propose more comprehensive details of the compounds structures and was used to design more active compounds. The most active designed compound had a high inhibitory activity of 9.22 that can be proposed for the treatment of diabetes type 2.

Evaluation of phenylethylamine type entactogens and their metabolites relevant to ecotoxicology - a QSAR study

The impact of the selected entactogens and their o-quinone metabolites on the environment was explored in QSAR studies by the use of predicted molecular descriptors, ADMET properties and environmental toxicity parameters, i.e., acute toxicity in Tetrahymena pyriformis (TOX_ATTP) expressed as Th_pyr_pIGC50/mmol L-1, acute toxicity in Pimephales promelas, the fathead minnow (TOX_FHM) expressed as Minnow LC50/mg L-1, the acute toxicity in Daphnia magna (TOX_DM) expressed as Daphnia LC50/mg L-1 and bioconcentration factor (BCF). The formation of corresponding o-quinones via benzo-dioxo-lone ring, O-demethylenation was predicted as the main metabolic pathway for all entactogens except for 1-(2,2-difluorobenzo[d][1,3]dioxol-5-yl)propan-2-amine (DiFMDA). The least favourable ADMET profile was revealed for N-(1-(benzo[d][1,3]dioxol-5-yl)propan-2-yl)-O-methylhydroxylamine (MDMEO). QSAR studies revealed significant linear correlations between MlogP of entactogens and MlogP of o-quinone metabolites (R = 0.99), and Th_pyr_pIGC50/mmol L-1 (R = 0.94), also their MlogPs with Minnow_LC50/mg L-1 (R = 0.80 and R = 0.78), BCF (R = 0.86 and R = 0.82) and percentage of o-quinones' yields (R = 0.73 and R = 0.80). Entactogens were predicted as non-biodegradable molecules, whereas the majority of their o-quinones were biodegradable.