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Chakravarty E, Dorak MT. Missed opportunities to increase efficiency of monoclonal antibody development using hybridoma technology and mice as the source animal. Front Immunol 2024; 15:1443726. [PMID: 39188720 PMCID: PMC11345191 DOI: 10.3389/fimmu.2024.1443726] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2024] [Accepted: 07/25/2024] [Indexed: 08/28/2024] Open
Affiliation(s)
- Esha Chakravarty
- School of Life Sciences, Pharmacy & Chemistry, Kingston University London, London, United Kingdom
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Liu Y, Zhuang Y, Yu L, Li Q, Zhao C, Meng R, Zhu J, Guo X. A Machine Learning Framework Based on Extreme Gradient Boosting to Predict the Occurrence and Development of Infectious Diseases in Laying Hen Farms, Taking H9N2 as an Example. Animals (Basel) 2023; 13:1494. [PMID: 37174531 PMCID: PMC10177545 DOI: 10.3390/ani13091494] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2023] [Revised: 04/26/2023] [Accepted: 04/26/2023] [Indexed: 05/15/2023] Open
Abstract
The H9N2 avian influenza virus has become one of the dominant subtypes of avian influenza virus in poultry and has been significantly harmful to chickens in China, with great economic losses in terms of reduced egg production or high mortality by co-infection with other pathogens. A prediction of H9N2 status based on easily available production data with high accuracy would be important and essential to prevent and control H9N2 outbreaks in advance. This study developed a machine learning framework based on the XGBoost classification algorithm using 3 months' laying rates and mortalities collected from three H9N2-infected laying hen houses with complete onset cycles. A framework was developed to automatically predict the H9N2 status of individual house for future 3 days (H9N2 status + 0, H9N2 status + 1, H9N2 status + 2) with five time frames (day + 0, day - 1, day - 2, day - 3, day - 4). It had been proven that a high accuracy rate > 90%, a recall rate > 90%, a precision rate of >80%, and an area under the curve of the receiver operator characteristic ≥ 0.85 could be achieved with the prediction models. Models with day + 0 and day - 1 were highly recommended to predict H9N2 status + 0 and H9N2 status + 1 for the direct or auxiliary monitoring of its occurrence and development. Such a framework could provide new insights into predicting H9N2 outbreaks, and other practical potential applications to assist in disease monitor were also considerable.
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Affiliation(s)
- Yu Liu
- Research Center of Information Technology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
- National Innovation Center of Digital Technology in Animal Husbandry, Beijing 100097, China
| | - Yanrong Zhuang
- College of Water Resources and Civil Engineering, China Agricultural University, Beijing 100083, China
| | - Ligen Yu
- Research Center of Information Technology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
- National Innovation Center of Digital Technology in Animal Husbandry, Beijing 100097, China
| | - Qifeng Li
- Research Center of Information Technology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
- National Innovation Center of Digital Technology in Animal Husbandry, Beijing 100097, China
| | - Chunjiang Zhao
- Research Center of Information Technology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
- National Innovation Center of Digital Technology in Animal Husbandry, Beijing 100097, China
| | - Rui Meng
- Research Center of Information Technology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
- National Innovation Center of Digital Technology in Animal Husbandry, Beijing 100097, China
| | - Jun Zhu
- Research Center of Information Technology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
- National Innovation Center of Digital Technology in Animal Husbandry, Beijing 100097, China
| | - Xiaoli Guo
- Research Center of Information Technology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
- National Innovation Center of Digital Technology in Animal Husbandry, Beijing 100097, China
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Fayaz A, Rajak KK, Kumar A, Karki M, Kiran, Rai V, Bhatt M, Singh RP. Development and characterization of mouse monoclonal antibodies to canine morbillivirus. Biologicals 2022; 79:19-26. [PMID: 36096853 DOI: 10.1016/j.biologicals.2022.08.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2021] [Revised: 06/14/2022] [Accepted: 08/23/2022] [Indexed: 11/02/2022] Open
Abstract
Canine morbillivirus is a highly contagious multi-host pathogen with high morbidity and mortality. Timely diagnosis is of utmost importance to effectively control such a dreadful disease. Monoclonal antibodies (mAbs) serve as a high throughput diagnostics and applied tools for research and development (R&D). In the present study, a total of six mouse monoclonal antibodies were developed. All the mAbs generated belonged to IgG class. Of the six mAbs, two of them, namely CD-2F8 and CD-3D8 were directed against the nucleocapsid protein of CDV as determined in western blotting. The reactivity of all the mAbs was checked in indirect-ELISA and cell-ELISA using different morbilliviruses. The mAbs could broadly be categorized as; CDV specific (CD-3D8 and CD-2F8), cross-reactive to PPR virus (CD-AB3 and CD-4D6) and cross-reactive to both PPR virus and measles virus (CD-5D10 and CD-6E5). The characterized mAbs were used for antigenic profiling of CDV, PPR virus and measles virus. Based on the reactivity pattern; a close antigenic relationship was found among CDV and PPR virus as compared to measles virus. A pair of CDV specific mAbs namely CD-2F8 and CD-3D8 were identified which did not cross-react with measles and PPR viruses and thus could be used for diagnostic applications.
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Affiliation(s)
- Arfa Fayaz
- Division of Biological Products, ICAR-Indian Veterinary Research Institute, Izatnagar, 243122, India.
| | - Kaushal Kishor Rajak
- Division of Biological Products, ICAR-Indian Veterinary Research Institute, Izatnagar, 243122, India.
| | - Ashok Kumar
- Division of Biological Products, ICAR-Indian Veterinary Research Institute, Izatnagar, 243122, India.
| | - Monu Karki
- Division of Biological Products, ICAR-Indian Veterinary Research Institute, Izatnagar, 243122, India.
| | - Kiran
- Division of Biological Products, ICAR-Indian Veterinary Research Institute, Izatnagar, 243122, India.
| | - Vishal Rai
- Division of Biological Products, ICAR-Indian Veterinary Research Institute, Izatnagar, 243122, India.
| | - Mukesh Bhatt
- Division of Biological Products, ICAR-Indian Veterinary Research Institute, Izatnagar, 243122, India.
| | - Rabindra Prasad Singh
- Division of Biological Products, ICAR-Indian Veterinary Research Institute, Izatnagar, 243122, India.
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Boruah JLH, Venkatesh G, Nagarajan S, Senthilkumar D, Bhatia S, Tosh C, Kumar M, Rai R, Tripathi S, Shukla S, Dubey CK, Singh VP. Immunogenicity and cross-protective efficacy of recombinant H5HA1 protein of clade 2.3.2.1a highly pathogenic H5N1 avian influenza virus expressed in E.coli. Microb Pathog 2022; 168:105605. [PMID: 35636692 DOI: 10.1016/j.micpath.2022.105605] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2022] [Revised: 05/19/2022] [Accepted: 05/20/2022] [Indexed: 11/18/2022]
Abstract
The global spread of H5N1 highly pathogenic avian influenza virus (HPAIV) in poultry has caused great economic loss to the poultry farmers and industry with significant pandemic threat. The current study involved production of recombinant HA1 protein of clade 2.3.2.1a H5N1 HPAIV (rH5HA1) in E.coli and evaluation of its protective efficacy in chickens. Purification under denaturing conditions and refolding by dialysis against buffers containing decreasing concentrations of urea was found to preserve the biological activity of the expressed recombinant protein as assessed by hemagglutination assay, Western blot and ELISA. The Montanide ISA 71 VGA adjuvanted rH5HA1 protein was used for immunization of chickens. Humoral response was maintained at a minimum of 4log2 hemagglutination inhibition (HI) titre till 154 days post 2nd booster. We evaluated the protective efficacy of rH5HA1 protein in immunized chickens by challenging them with homologous (2.3.2.1a) and heterologous (2.3.2.1c) clades of H5N1 HPAIV. In both the groups, the HI titre significantly increased (P < 0.05) after challenge and the virus shedding significantly (P < 0.05) reduced between 3rd and 14th day post challenge. The virus shedding ratio in oro-pharyngeal swabs did not differ significantly between both the groups except on 7 days post challenge and during the entire experimental period in cloacal swabs. These results indicate that rH5HA1 was able to induce homologous and cross protective immune response in chickens and could be a potential vaccine candidate used for combating the global spread of H5N1 HPAIV threat. To our knowledge, this is the first study to report immunogenicity and protective efficacy of prokaryotic recombinant H5HA1 protein in chicken.
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Affiliation(s)
| | - Govindarajulu Venkatesh
- ICAR-National Institute of High Security Animal Diseases (NIHSAD), Anand Nagar, Bhopal, MP, 462021, India.
| | - Shanmugasundaram Nagarajan
- ICAR-National Institute of High Security Animal Diseases (NIHSAD), Anand Nagar, Bhopal, MP, 462021, India
| | - Dhanapal Senthilkumar
- ICAR-National Institute of High Security Animal Diseases (NIHSAD), Anand Nagar, Bhopal, MP, 462021, India
| | - Sandeep Bhatia
- ICAR-National Institute of High Security Animal Diseases (NIHSAD), Anand Nagar, Bhopal, MP, 462021, India
| | - Chakradhar Tosh
- ICAR-National Institute of High Security Animal Diseases (NIHSAD), Anand Nagar, Bhopal, MP, 462021, India
| | - Manoj Kumar
- ICAR-National Institute of High Security Animal Diseases (NIHSAD), Anand Nagar, Bhopal, MP, 462021, India
| | - Rupal Rai
- ICAR-National Institute of High Security Animal Diseases (NIHSAD), Anand Nagar, Bhopal, MP, 462021, India
| | - Sushil Tripathi
- ICAR-National Institute of High Security Animal Diseases (NIHSAD), Anand Nagar, Bhopal, MP, 462021, India
| | - Shweta Shukla
- ICAR-National Institute of High Security Animal Diseases (NIHSAD), Anand Nagar, Bhopal, MP, 462021, India
| | - Chandan Kumar Dubey
- ICAR-National Institute of High Security Animal Diseases (NIHSAD), Anand Nagar, Bhopal, MP, 462021, India
| | - Vijendra Pal Singh
- ICAR-National Institute of High Security Animal Diseases (NIHSAD), Anand Nagar, Bhopal, MP, 462021, India
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Sączyńska V, Bierczyńska-Krzysik A, Cecuda-Adamczewska V, Baran P, Porębska A, Florys K, Zieliński M, Płucienniczak G. Production of highly and broad-range specific monoclonal antibodies against hemagglutinin of H5-subtype avian influenza viruses and their differentiation by mass spectrometry. Virol J 2018; 15:13. [PMID: 29334981 PMCID: PMC5769215 DOI: 10.1186/s12985-017-0886-2] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2017] [Accepted: 10/31/2017] [Indexed: 02/08/2023] Open
Abstract
Background The highly pathogenic avian influenza viruses of the H5 subtype, such as the H5N1 viral strains or the novel H5N8 and H5N2 reassortants, are of both veterinary and public health concern worldwide. To combat these viruses, monoclonal antibodies (mAbs) against H5 hemagglutinin (HA) play a significant role. These mAbs are effective diagnostic and therapeutic agents and powerful tools in vaccine development and basic scientific research. The aim of this study was to obtain diagnostically valuable mAbs with broad strain specificity against H5-subtype AIVs. Results We applied the hybridoma method to produce anti-HA mAbs. The cloning and screening procedures resulted in the selection of 7 mouse hybridoma cell lines and their respective antibody clones. Preliminary immunoreactivity studies showed that these newly established mAbs, all of the IgG1 isotype, had high specificity and broad-range activities against the H5 HAs. However, these studies did not allow for a clear distinction among the selected antibodies and mAb-secreting hybridoma clones. To differentiate the analyzed mAbs and determine the exact number of hybridoma clones, peptide mapping of the Fc and Fab fragments was performed using a Matrix-Assisted Laser Desorption Ionization Time of Flight (MALDI-TOF/TOF) mass spectrometer. Detailed analyses of the acquired MS and MS/MS spectra confirmed that the Fc fragments constituted highly conserved species- and isotype-immunoglobulin components, whereas the Fab fragments exhibited considerable variation in the sequences that determine antibody specificity. This approach enabled unambiguous characterization of the selected mAbs according to their peptide composition. As a result, 6 different clones were distinguished. Conclusions Our work provided a unique panel of anti-H5 HA mAbs, which meets the demand for novel, high-specificity analytical tools for use in serologic surveillance. Applications of these mAbs in areas other than diagnostics are also possible. Moreover, we demonstrated for the first time that peptide mapping of antibody fragments with mass spectrometry is an efficient method for the differentiation of antibody clones and relevant antibody-producing cell lines. The method may be successfully used to characterize mAbs at the protein level. Electronic supplementary material The online version of this article (10.1186/s12985-017-0886-2) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Violetta Sączyńska
- Institute of Biotechnology and Antibiotics, Starościńska 5 Street, 02-516, Warsaw, Poland.
| | | | | | - Piotr Baran
- Institute of Biotechnology and Antibiotics, Starościńska 5 Street, 02-516, Warsaw, Poland
| | - Anna Porębska
- Institute of Biotechnology and Antibiotics, Starościńska 5 Street, 02-516, Warsaw, Poland
| | - Katarzyna Florys
- Institute of Biotechnology and Antibiotics, Starościńska 5 Street, 02-516, Warsaw, Poland
| | - Marcin Zieliński
- Institute of Biotechnology and Antibiotics, Starościńska 5 Street, 02-516, Warsaw, Poland
| | - Grażyna Płucienniczak
- Institute of Biotechnology and Antibiotics, Starościńska 5 Street, 02-516, Warsaw, Poland
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Malik A, Mallajosyula VVA, Mishra NN, Varadarajan R, Gupta SK. Generation and Characterization of Monoclonal Antibodies Specific to Avian Influenza H5N1 Hemagglutinin Protein. Monoclon Antib Immunodiagn Immunother 2015; 34:436-41. [PMID: 26683184 DOI: 10.1089/mab.2015.0047] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Abstract
Highly pathogenic avian influenza (HPAI) H5N1 virus has in the past breached the species barrier from infected domestic poultry to humans in close contact. Although human-to-human transmission has previously not been reported, HPAI H5N1 virus has pandemic potential owing to gain of function mutation(s) and/or genetic reassortment with human influenza A viruses. Monoclonal antibodies (MAbs) have been used for diagnosis as well as specific therapeutic candidates in several disease conditions including viral infections in humans. In this study, we describe the preliminary characterization of four murine MAbs developed against recombinant hemagglutinin (rHA) protein of avian H5N1 A/turkey/Turkey/1/2005 virus that are either highly specific or broadly reactive against HA from other H5N1 subtype viruses, such as A/Hong Kong/213/03, A/Common magpie/Hong Kong/2256/2006, and A/Barheaded goose/Quinghai/14/2008. The antibody binding is specific to H5N1 HAs, as none of the antibodies bound H1N1, H2N2, H3N2, or B/Brisbane/60/2008 HAs. Out of the four MAbs, one of them (MA-7) also reacted weakly with the rHA protein of H7N9 A/Anhui/1/2013. All four MAbs bound H5 HA (A/turkey/Turkey/1/2005) with high affinity with an equilibrium dissociation constant (KD) ranging between 0.05 and 10.30 nM. One of the MAbs (MA-1) also showed hemagglutination inhibition activity (HI titer; 31.25 μg/mL) against the homologous A/turkey/Turkey/1/2005 H5N1 virus. These antibodies may be useful in developing diagnostic tools for detection of influenza H5N1 virus infection.
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MESH Headings
- Animals
- Antibodies, Monoclonal/biosynthesis
- Antibodies, Viral/biosynthesis
- Antibody Specificity
- Ascites/immunology
- Cross Reactions
- Female
- Hemagglutination Inhibition Tests
- Hemagglutinin Glycoproteins, Influenza Virus/administration & dosage
- Hemagglutinin Glycoproteins, Influenza Virus/analysis
- Hemagglutinin Glycoproteins, Influenza Virus/genetics
- Hemagglutinin Glycoproteins, Influenza Virus/immunology
- Humans
- Influenza A Virus, H1N1 Subtype/chemistry
- Influenza A Virus, H1N1 Subtype/immunology
- Influenza A Virus, H3N2 Subtype/chemistry
- Influenza A Virus, H3N2 Subtype/immunology
- Influenza A Virus, H5N1 Subtype/chemistry
- Influenza A Virus, H5N1 Subtype/immunology
- Influenza A Virus, H7N9 Subtype/chemistry
- Influenza A Virus, H7N9 Subtype/immunology
- Kinetics
- Mice
- Mice, Inbred BALB C
- Protein Binding
- Recombinant Proteins/administration & dosage
- Recombinant Proteins/analysis
- Recombinant Proteins/genetics
- Recombinant Proteins/immunology
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Affiliation(s)
- Ankita Malik
- 1 Reproductive Cell Biology Lab, National Institute of Immunology , New Delhi, India
| | | | - Nripendra Nath Mishra
- 1 Reproductive Cell Biology Lab, National Institute of Immunology , New Delhi, India
| | | | - Satish Kumar Gupta
- 1 Reproductive Cell Biology Lab, National Institute of Immunology , New Delhi, India
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Generation of monoclonal antibodies reactive against subtype specific conserved B-cell epitopes on haemagglutinin protein of influenza virus H5N1. Virus Res 2015; 199:46-55. [DOI: 10.1016/j.virusres.2015.01.006] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2014] [Revised: 12/12/2014] [Accepted: 01/10/2015] [Indexed: 11/19/2022]
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Preparation of monoclonal antibodies against poor immunogenic avian influenza virus proteins. J Immunol Methods 2013; 387:43-50. [DOI: 10.1016/j.jim.2012.09.009] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2012] [Revised: 09/05/2012] [Accepted: 09/19/2012] [Indexed: 11/21/2022]
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