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Faust O, En Wei Koh J, Jahmunah V, Sabut S, Ciaccio EJ, Majid A, Ali A, Lip GYH, Acharya UR. Fusion of Higher Order Spectra and Texture Extraction Methods for Automated Stroke Severity Classification with MRI Images. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2021; 18:8059. [PMID: 34360349 PMCID: PMC8345794 DOI: 10.3390/ijerph18158059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/18/2021] [Revised: 07/05/2021] [Accepted: 07/23/2021] [Indexed: 11/18/2022]
Abstract
This paper presents a scientific foundation for automated stroke severity classification. We have constructed and assessed a system which extracts diagnostically relevant information from Magnetic Resonance Imaging (MRI) images. The design was based on 267 images that show the brain from individual subjects after stroke. They were labeled as either Lacunar Syndrome (LACS), Partial Anterior Circulation Syndrome (PACS), or Total Anterior Circulation Stroke (TACS). The labels indicate different physiological processes which manifest themselves in distinct image texture. The processing system was tasked with extracting texture information that could be used to classify a brain MRI image from a stroke survivor into either LACS, PACS, or TACS. We analyzed 6475 features that were obtained with Gray-Level Run Length Matrix (GLRLM), Higher Order Spectra (HOS), as well as a combination of Discrete Wavelet Transform (DWT) and Gray-Level Co-occurrence Matrix (GLCM) methods. The resulting features were ranked based on the p-value extracted with the Analysis Of Variance (ANOVA) algorithm. The ranked features were used to train and test four types of Support Vector Machine (SVM) classification algorithms according to the rules of 10-fold cross-validation. We found that SVM with Radial Basis Function (RBF) kernel achieves: Accuracy (ACC) = 93.62%, Specificity (SPE) = 95.91%, Sensitivity (SEN) = 92.44%, and Dice-score = 0.95. These results indicate that computer aided stroke severity diagnosis support is possible. Such systems might lead to progress in stroke diagnosis by enabling healthcare professionals to improve diagnosis and management of stroke patients with the same resources.
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Affiliation(s)
- Oliver Faust
- Department of Engineering and Mathematics, Sheffield Hallam University, Sheffield S1 1WB, UK
| | - Joel En Wei Koh
- School of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore 599489, Singapore; (J.E.W.K.); (V.J.); (U.R.A.)
| | - Vicnesh Jahmunah
- School of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore 599489, Singapore; (J.E.W.K.); (V.J.); (U.R.A.)
| | - Sukant Sabut
- School of Electronics Engineering, Kalinga Institute of Industrial Technology, Bhubaneswar, Odisha 751024, India;
| | - Edward J. Ciaccio
- Department of Medicine-Cardiology, Columbia University, New York, NY 10027, USA;
| | - Arshad Majid
- Sheffield Institute for Translational Neuroscience, University of Sheffield, Sheffield S10 2HQ, UK;
| | - Ali Ali
- Sheffield Teaching Hospitals NIHR Biomedical Research Centre, Sheffield S10 2JF, UK;
| | - Gregory Y. H. Lip
- Liverpool Centre for Cardiovascular Science, University of Liverpool and Liverpool Heart & Chest Hospital, Liverpool L69 7TX, UK;
- Aalborg Thrombosis Research Unit, Department of Clinical Medicine, Aalborg University, 9000 Aalborg, Denmark
| | - U. Rajendra Acharya
- School of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore 599489, Singapore; (J.E.W.K.); (V.J.); (U.R.A.)
- School of Science and Technology, Singapore University of Social Sciences, 463 Clementi Road, Singapore 599494, Singapore
- Department of Bioinformatics and Medical Engineering, Asia University, Taichung 41354, Taiwan
- International Research Organization for Advanced Science and Technology (IROAST), Kumamoto University, Kumamoto 860-8555, Japan
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Wan Y, Zheng Z, Liu R, Zhu Z, Zhou H, Zhang X, Boumaraf S. A Multi-Scale and Multi-Level Fusion Approach for Deep Learning-Based Liver Lesion Diagnosis in Magnetic Resonance Images with Visual Explanation. Life (Basel) 2021; 11:life11060582. [PMID: 34207262 PMCID: PMC8234101 DOI: 10.3390/life11060582] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Revised: 06/10/2021] [Accepted: 06/16/2021] [Indexed: 02/08/2023] Open
Abstract
Many computer-aided diagnosis methods, especially ones with deep learning strategies, of liver cancers based on medical images have been proposed. However, most of such methods analyze the images under only one scale, and the deep learning models are always unexplainable. In this paper, we propose a deep learning-based multi-scale and multi-level fusing approach of CNNs for liver lesion diagnosis on magnetic resonance images, termed as MMF-CNN. We introduce a multi-scale representation strategy to encode both the local and semi-local complementary information of the images. To take advantage of the complementary information of multi-scale representations, we propose a multi-level fusion method to combine the information of both the feature level and the decision level hierarchically and generate a robust diagnostic classifier based on deep learning. We further explore the explanation of the diagnosis decision of the deep neural network through visualizing the areas of interest of the network. A new scoring method is designed to evaluate whether the attention maps can highlight the relevant radiological features. The explanation and visualization make the decision-making process of the deep neural network transparent for the clinicians. We apply our proposed approach to various state-of-the-art deep learning architectures. The experimental results demonstrate the effectiveness of our approach.
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Affiliation(s)
- Yuchai Wan
- Beijing Key Laboratory of Big Data Technology for Food Safety, Beijing Technology and Business University, Beijing 100048, China; (H.Z.); (X.Z.)
- Correspondence: (Y.W.); (Z.Z.)
| | - Zhongshu Zheng
- Beijing Lab of Intelligent Information Technology, School of Computer Science, Beijing Institute of Technology, Beijing 100081, China;
| | - Ran Liu
- China South-to-North Water Diversion Corporation Limited, Beijing 100038, China;
| | - Zheng Zhu
- Department of Diagnostic Radiology, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, 17, Panjiayuan NanLi, Chaoyang District, Beijing 100021, China
- Correspondence: (Y.W.); (Z.Z.)
| | - Hongen Zhou
- Beijing Key Laboratory of Big Data Technology for Food Safety, Beijing Technology and Business University, Beijing 100048, China; (H.Z.); (X.Z.)
| | - Xun Zhang
- Beijing Key Laboratory of Big Data Technology for Food Safety, Beijing Technology and Business University, Beijing 100048, China; (H.Z.); (X.Z.)
| | - Said Boumaraf
- Centre d’Exploitation des Systèmes de Télécommunications Spatiales (CESTS), Agence Spatiale Algérienne, Algiers, Algeria;
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Quantitative Ultrasound Texture Analysis to Assess the Spastic Muscles in Stroke Patients. APPLIED SCIENCES-BASEL 2020. [DOI: 10.3390/app11010011] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
This study aimed to investigate the feasibility of sonoelastography for determining echotexture in post-stroke patients. Moreover, the relationships of muscle echotexture features, muscle stiffness, and functional performance in spastic muscle were explored. The study population comprised 22 males with stroke. The echotexture features (entropy and energy) of the biceps brachii muscles (BBM) in both arms were extracted by local binary pattern (LBP) from ultrasound images, whereas the stiffness of BBM was assessed by shear wave velocity (SWV) in the transverse and longitudinal planes. The Fugl–Meyer assessment (FMA) was used to assess the functional performance of the upper arm. The results showed that echotexture was more inhomogeneous in the paretic BBM than in the non-paretic BBM. SWV was significantly faster in paretic BBM than in non-paretic BBM. Both echotexture features were significantly correlated with SWV in the longitudinal plane. The feature of energy was significantly negatively correlated with FMA in the longitudinal plane and was significantly positively correlated with the duration from stroke onset in the transverse plane. The echotexture extracted by LBP may be a promising approach for quantitative assessment of the spastic BBM in post-stroke patients.
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Książek W, Hammad M, Pławiak P, Acharya UR, Tadeusiewicz R. Development of novel ensemble model using stacking learning and evolutionary computation techniques for automated hepatocellular carcinoma detection. Biocybern Biomed Eng 2020. [DOI: 10.1016/j.bbe.2020.08.007] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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Rajendra Acharya U, Meiburger KM, Faust O, En Wei Koh J, Lih Oh S, Ciaccio EJ, Subudhi A, Jahmunah V, Sabut S. Automatic detection of ischemic stroke using higher order spectra features in brain MRI images. COGN SYST RES 2019. [DOI: 10.1016/j.cogsys.2019.05.005] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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Klingensmith JD, Haggard AL, Ralston JT, Qiang B, Fedewa RJ, Elsharkawy H, Geoffrey Vince D. Tissue classification in intercostal and paravertebral ultrasound using spectral analysis of radiofrequency backscatter. J Med Imaging (Bellingham) 2019; 6:047001. [PMID: 31720315 DOI: 10.1117/1.jmi.6.4.047001] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2019] [Accepted: 10/14/2019] [Indexed: 12/23/2022] Open
Abstract
Paravertebral and intercostal nerve blocks have experienced a resurgence in popularity. Ultrasound has become the gold standard for visualization of the needle during injection of the analgesic, but the intercostal artery and vein can be difficult to visualize. We investigated the use of spectral analysis of raw radiofrequency (RF) ultrasound signals for identification of the intercostal vessels and six other tissue types in the intercostal and paravertebral spaces. Features derived from the one-dimensional spectrum, two-dimensional spectrum, and cepstrum were used to train four different machine learning algorithms. In addition, the use of the average normalized spectrum as the feature set was compared with the derived feature set. Compared to a support vector machine (SVM) (74.2%), an artificial neural network (ANN) (68.2%), and multinomial analysis (64.1%), a random forest (84.9%) resulted in the most accurate classification. The accuracy using a random forest trained with the first 15 principal components of the average normalized spectrum was 87.0%. These results demonstrate that using a machine learning algorithm with spectral analysis of raw RF ultrasound signals has the potential to provide tissue characterization in intercostal and paravertebral ultrasound.
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Affiliation(s)
- Jon D Klingensmith
- Southern Illinois University Edwardsville, Department of Electrical and Computer Engineering, Edwardsville, Illinois, United States
| | - Asher L Haggard
- Southern Illinois University Edwardsville, Department of Electrical and Computer Engineering, Edwardsville, Illinois, United States
| | - Jack T Ralston
- Southern Illinois University Edwardsville, Department of Electrical and Computer Engineering, Edwardsville, Illinois, United States
| | - Beidi Qiang
- Southern Illinois University Edwardsville, Department of Mathematics and Statistics, Edwardsville, Illinois, United States
| | - Russell J Fedewa
- Cleveland Clinic Foundation, Department of Biomedical Engineering, Cleveland, Ohio, United States
| | - Hesham Elsharkawy
- Cleveland Clinic Foundation, Department of General Anesthesia and Pain Management, Outcomes Research, and Anesthesiology Institute, Cleveland, Ohio, United States
| | - David Geoffrey Vince
- Cleveland Clinic Foundation, Department of Biomedical Engineering, Cleveland, Ohio, United States
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Kvam J, Solberg S, Myhre OF, Rodriguez-Molares A, Angelsen BAJ. Nonlinear bulk elasticity imaging using dual frequency ultrasound. THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2019; 146:2492. [PMID: 31671951 DOI: 10.1121/1.5129120] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2019] [Accepted: 09/22/2019] [Indexed: 06/10/2023]
Abstract
The nonlinear acoustic bulk properties of tissue, e.g., the coefficient of nonlinearity, βn, or the nonlinear bulk elasticity, βp=βnκ0, have been shown to be promising parameters for tissue characterization due to their sensitivity to tissue structure. Previously developed methods for imaging these parameters using single frequency ultrasound have shown success in a laboratory setting using the transmission mode. In the pulse-echo mode, however, unknown absorption, diffraction, and speckle produce unreliable estimates and instability, causing these methods to have achieved no clinical relevance. In this paper, a pulse-echo method for measurement of the nonlinear bulk elasticity is presented using a dual frequency approach. The method is less sensitive to diffraction and absorption due to a separate low frequency manipulation wave. The technique is tested in both simulations and in vitro in a heterogeneous phantom with two regions of different nonlinear properties. Both in simulations and in vitro, a spatial βp map is produced where the two regions are clearly distinguished. In addition, the quantitative estimates of βp obtained are close to the expected values, making the method a promising first step toward in vivo imaging of nonlinear bulk properties.
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Affiliation(s)
- Johannes Kvam
- Department of Circulation and Medical Imaging, Norwegian University of Science and Technology, Trondheim, 7030, Norway
| | - Stian Solberg
- SURF Technology AS, Department of Circulation and Medical Imaging, Norwegian University of Science and Technology, P.O. Box 8905, 7491, Trondheim, Norway
| | - Ola F Myhre
- Department of Circulation and Medical Imaging, Norwegian University of Science and Technology, Trondheim, 7030, Norway
| | - Alfonso Rodriguez-Molares
- Department of Circulation and Medical Imaging, Norwegian University of Science and Technology, Trondheim, 7030, Norway
| | - Bjørn A J Angelsen
- Department of Circulation and Medical Imaging, Norwegian University of Science and Technology, Trondheim, 7030, Norway
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Chen CI, Chen TB, Lu NH, Du WC, Liang CY, Liu KI, Hsu SY, Lin LW, Huang YH. Classification for liver ultrasound tomography by posterior attenuation correction with a phantom study. Proc Inst Mech Eng H 2019; 233:1100-1112. [PMID: 31441386 DOI: 10.1177/0954411919871123] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The B-mode ultrasound usually contains scattering speckle noise which reduces the detailed resolution of the target and is regarded as an intrinsic noise that interferes with diagnostic precision. The aim of this study was to classify hepatic steatosis through applying attenuation correction with a phantom to reduce speckle noise in liver ultrasound tomography in patients. This retrospective study applied three randomized groups signifying different liver statuses. A total of 114 patients' effective liver ultrasound images-30 normal, 44 fatty, and 40 cancerous-were included. The proposed depth attenuation correction method was first applied to images. Three regions of interest were manually drawn on the images. Next, five feature values for the regions of interest were calculated. Finally, the hybrid method of logistic regression and support vector machine was employed to classify the ultrasound images with 10-fold cross-validation. The accuracy, kappa statistic, and mean absolute error of the proposed hybrid method were 87.5%, 0.812, and 0.119, respectively, which were higher than those of the logistic regression method-75.0%, 0.548, and 0.280-or those of the support vector machine method-75.7%, 0.637, and 0.293-respectively. Therefore, the hybrid method has been proven to be more accurate and have better performance and less error than either single method. The hybrid method provided acceptable accuracy of classification in three liver ultrasound image groups after depth attenuation correction. In the future, the deep learning approaches may be considered for the application in classifying liver ultrasound images.
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Affiliation(s)
- Chih-I Chen
- Department of Information Engineering, I-Shou University, Kaohsiung.,Division of Colon & Rectal Surgery, Department of Surgery, E-Da Hospital, I-Shou University, Kaohsiung
| | - Tai-Been Chen
- Department of Medical Imaging and Radiological Sciences, I-Shou University, Kaohsiung
| | - Nan-Han Lu
- Department of Medical Imaging and Radiological Sciences, I-Shou University, Kaohsiung.,Department of Radiology, E-Da Hospital, I-Shou University, Kaohsiung
| | - Wei-Chang Du
- Department of Information Engineering, I-Shou University, Kaohsiung
| | - Chih-Yu Liang
- Department of Information Engineering, I-Shou University, Kaohsiung.,Department of Medical Imaging and Radiological Sciences, I-Shou University, Kaohsiung.,Department of Emergency Medicine, E-Da Hospital, I-Shou University, Kaohsiung
| | - Ko-Ing Liu
- Department of Radiology, E-Da Cancer Hospital, I-Shou University, Kaohsiung
| | - Shih-Yen Hsu
- Department of Information Engineering, I-Shou University, Kaohsiung
| | - Li Wei Lin
- The School of Chinese Medicine for Post-Baccalaureate, I-Shou University, Kaohsiung
| | - Yung-Hui Huang
- Department of Medical Imaging and Radiological Sciences, I-Shou University, Kaohsiung
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Kvam J, Holm S, Angelsen BAJ. Exploiting Ballou's rule for better tissue classification. THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2019; 145:2103. [PMID: 31046352 DOI: 10.1121/1.5096533] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2018] [Accepted: 03/09/2019] [Indexed: 06/09/2023]
Abstract
Ultrasound tissue characterization based on the coefficient of nonlinearity, βn = 1 + B/2A, has been demonstrated to produce added diagnostic value due to its large variation and sensitivity to tissue structure. However, the parameter has been observed to be significantly correlated to the speed of sound and density. These relationships are analyzed empirically as well as theoretically by developing a pressure-density relation based on a thermodynamic model and the Mie intermolecular potential. The results indicate that for many soft tissues, the coefficient of nonlinearity is largely determined by the isentropic compressibility, κs. Consequently, for tissue characterization, estimating the nonlinear response of the medium, given by βp = βnκs, appears to be beneficial due to correlated quantities.
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Affiliation(s)
- Johannes Kvam
- Department of Circulation and Medical Imaging, Norwegian University of Science and Technology, P.O. Box 8905, N-7489, Trondheim, Norway
| | - Sverre Holm
- Department of Informatics, University of Oslo, P.O. Box 1080, NO-0316 Oslo, Norway
| | - Bjørn A J Angelsen
- Department of Circulation and Medical Imaging, Norwegian University of Science and Technology, P.O. Box 8905, N-7489, Trondheim, Norway
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Kriti, Virmani J, Agarwal R. Effect of despeckle filtering on classification of breast tumors using ultrasound images. Biocybern Biomed Eng 2019. [DOI: 10.1016/j.bbe.2019.02.004] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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Chronic Liver Disease Classification Using Hybrid Whale Optimization with Simulated Annealing and Ensemble Classifier. Symmetry (Basel) 2019. [DOI: 10.3390/sym11010033] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Abstract
Chronic liver disease (CLD), which indicates the inflammatory condition of the liver, leads to cirrhosis or even partial or total liver dysfunction when left untreated. A non-invasive approach for evaluating CLD with computed tomography (CT) images is proposed using an ensemble of classifiers. To accurately classify CLD, the hybrid whale optimization algorithm with simulated annealing (WOA-SA) is used in selecting an optimal set of features. The proposed method employs seven sets of features with a total of 73–3D (three-dimensional) texture features. A hybrid ensemble classifier with support vector machine (SVM), k—Nearest Neighbor (k-NN), and random forest (RF) classifiers are used to classify liver diseases. Experimental analysis is performed on clinical CT images datasets, which include normal liver, fatty liver, metastasis, cirrhosis, and cancerous samples. The optimal features selected using the WOA-SA improve the accuracy of CLD classification for the five classes of diseases mentioned above. The accuracy of the liver classification using ensemble classifier yields approximately 98% with a 95% confidence interval (CI) of (0.7789, 1.0000) and an error rate of 1.9%. The performance of the proposed method is compared with two existing algorithms and the sensitivity and specificity yield an overall average of 96% and 93%, with 95% confidence interval of (0.7513, 1.0000) and (0.7126, 1.0000), respectively. Classification of CLD based on ensemble classifier illustrates the effectiveness of the proposed method and the comparison analysis demonstrates the superiority of the methodology.
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Acharya UR, Raghavendra U, Koh JEW, Meiburger KM, Ciaccio EJ, Hagiwara Y, Molinari F, Leong WL, Vijayananthan A, Yaakup NA, Fabell MKBM, Yeong CH. Automated detection and classification of liver fibrosis stages using contourlet transform and nonlinear features. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2018; 166:91-98. [PMID: 30415722 DOI: 10.1016/j.cmpb.2018.10.006] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2018] [Revised: 08/24/2018] [Accepted: 10/01/2018] [Indexed: 06/09/2023]
Abstract
BACKGROUND AND OBJECTIVE Liver fibrosis is a type of chronic liver injury that is characterized by an excessive deposition of extracellular matrix protein. Early detection of liver fibrosis may prevent further growth toward liver cirrhosis and hepatocellular carcinoma. In the past, the only method to assess liver fibrosis was through biopsy, but this examination is invasive, expensive, prone to sampling errors, and may cause complications such as bleeding. Ultrasound-based elastography is a promising tool to measure tissue elasticity in real time; however, this technology requires an upgrade of the ultrasound system and software. In this study, a novel computer-aided diagnosis tool is proposed to automatically detect and classify the various stages of liver fibrosis based upon conventional B-mode ultrasound images. METHODS The proposed method uses a 2D contourlet transform and a set of texture features that are efficiently extracted from the transformed image. Then, the combination of a kernel discriminant analysis (KDA)-based feature reduction technique and analysis of variance (ANOVA)-based feature ranking technique was used, and the images were then classified into various stages of liver fibrosis. RESULTS Our 2D contourlet transform and texture feature analysis approach achieved a 91.46% accuracy using only four features input to the probabilistic neural network classifier, to classify the five stages of liver fibrosis. It also achieved a 92.16% sensitivity and 88.92% specificity for the same model. The evaluation was done on a database of 762 ultrasound images belonging to five different stages of liver fibrosis. CONCLUSIONS The findings suggest that the proposed method can be useful to automatically detect and classify liver fibrosis, which would greatly assist clinicians in making an accurate diagnosis.
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Affiliation(s)
- U Rajendra Acharya
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Clementi 599489, Singapore; Department of Biomedical Engineering, School of Science and Technology, Singapore University of Social Sciences, Clementi 599491, Singapore; School of Medicine, Faculty of Health and Medical Sciences, Taylor's University, 47500 Subang Jaya, Malaysia
| | - U Raghavendra
- Department of Instrumentation and Control Engineering, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal 576104, India
| | - Joel E W Koh
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Clementi 599489, Singapore
| | - Kristen M Meiburger
- Department of Electronics and Telecommunications, Politecnico di Torino, Corso Duca degli Abruzzi, 24, 10129 Torino, Italy.
| | - Edward J Ciaccio
- Department of Medicine, Columbia University, New York, NY, 10032, USA
| | - Yuki Hagiwara
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Clementi 599489, Singapore
| | - Filippo Molinari
- Department of Electronics and Telecommunications, Politecnico di Torino, Corso Duca degli Abruzzi, 24, 10129 Torino, Italy
| | - Wai Ling Leong
- Department of Biomedical Imaging, Faculty of Medicine, University of Malaya, 50603 Kuala Lumpur, Malaysia
| | - Anushya Vijayananthan
- Department of Biomedical Imaging, Faculty of Medicine, University of Malaya, 50603 Kuala Lumpur, Malaysia
| | - Nur Adura Yaakup
- Department of Biomedical Imaging, Faculty of Medicine, University of Malaya, 50603 Kuala Lumpur, Malaysia
| | - Mohd Kamil Bin Mohd Fabell
- Department of Biomedical Imaging, Faculty of Medicine, University of Malaya, 50603 Kuala Lumpur, Malaysia
| | - Chai Hong Yeong
- Department of Biomedical Imaging, Faculty of Medicine, University of Malaya, 50603 Kuala Lumpur, Malaysia; School of Medicine, Faculty of Health and Medical Sciences, Taylor's University, 47500 Subang Jaya, Malaysia
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Thin Cap Fibroatheroma Detection in Virtual Histology Images Using Geometric and Texture Features. APPLIED SCIENCES-BASEL 2018. [DOI: 10.3390/app8091632] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
Atherosclerotic plaque rupture is the most common mechanism responsible for a majority of sudden coronary deaths. The precursor lesion of plaque rupture is thought to be a thin cap fibroatheroma (TCFA), or “vulnerable plaque”. Virtual Histology-Intravascular Ultrasound (VH-IVUS) images are clinically available for visualising colour-coded coronary artery tissue. However, it has limitations in terms of providing clinically relevant information for identifying vulnerable plaque. The aim of this research is to improve the identification of TCFA using VH-IVUS images. To more accurately segment VH-IVUS images, a semi-supervised model is developed by means of hybrid K-means with Particle Swarm Optimisation (PSO) and a minimum Euclidean distance algorithm (KMPSO-mED). Another novelty of the proposed method is fusion of different geometric and informative texture features to capture the varying heterogeneity of plaque components and compute a discriminative index for TCFA plaque, while the existing research on TCFA detection has only focused on the geometric features. Three commonly used statistical texture features are extracted from VH-IVUS images: Local Binary Patterns (LBP), Grey Level Co-occurrence Matrix (GLCM), and Modified Run Length (MRL). Geometric and texture features are concatenated in order to generate complex descriptors. Finally, Back Propagation Neural Network (BPNN), kNN (K-Nearest Neighbour), and Support Vector Machine (SVM) classifiers are applied to select the best classifier for classifying plaque into TCFA and Non-TCFA. The present study proposes a fast and accurate computer-aided method for plaque type classification. The proposed method is applied to 588 VH-IVUS images obtained from 10 patients. The results prove the superiority of the proposed method, with accuracy rates of 98.61% for TCFA plaque.
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Guo LH, Wang D, Qian YY, Zheng X, Zhao CK, Li XL, Bo XW, Yue WW, Zhang Q, Shi J, Xu HX. A two-stage multi-view learning framework based computer-aided diagnosis of liver tumors with contrast enhanced ultrasound images. Clin Hemorheol Microcirc 2018; 69:343-354. [PMID: 29630528 DOI: 10.3233/ch-170275] [Citation(s) in RCA: 54] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
OBJECTIVE With the fast development of artificial intelligence techniques, we proposed a novel two-stage multi-view learning framework for the contrast-enhanced ultrasound (CEUS) based computer-aided diagnosis for liver tumors, which adopted only three typical CEUS images selected from the arterial phase, portal venous phase and late phase. MATERIALS AND METHODS In the first stage, the deep canonical correlation analysis (DCCA) was performed on three image pairs between the arterial and portal venous phases, arterial and delayed phases, and portal venous and delayed phases respectively, which then generated total six-view features. While in the second stage, these multi-view features were then fed to a multiple kernel learning (MKL) based classifier to further promote the diagnosis result. Two MKL classification algorithms were evaluated in this MKL-based classification framework. We evaluated proposed DCCA-MKL framework on 93 lesions (47 malignant cancers vs. 46 benign tumors). RESULTS The proposed DCCA-MKL framework achieved the mean classification accuracy, sensitivity, specificity, Youden index, false positive rate, and false negative rate of 90.41 ± 5.80%, 93.56 ± 5.90%, 86.89 ± 9.38%, 79.44 ± 11.83%, 13.11 ± 9.38% and 6.44 ± 5.90%, respectively, by soft margin MKL classifier. CONCLUSION The experimental results indicate that the proposed DCCA-MKL framework achieves best performance for discriminating benign liver tumors from malignant liver cancers. Moreover, it is also proved that the three-phase CEUS image based CAD is feasible for liver tumors with the proposed DCCA-MKL framework.
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Affiliation(s)
- Le-Hang Guo
- Department of Medical Ultrasound, Shanghai Tenth People's Hospital, Ultrasound Research and Education Institute, Tongji University School of Medicine, Shanghai, China
| | - Dan Wang
- Department of Medical Ultrasound, Shanghai Tenth People's Hospital, Ultrasound Research and Education Institute, Tongji University School of Medicine, Shanghai, China
| | - Yi-Yi Qian
- Shanghai Institute for Advanced Communication and Data Science, School of Communication and Information Engineering, Shanghai University, Shanghai, China
| | - Xiao Zheng
- Shanghai Institute for Advanced Communication and Data Science, School of Communication and Information Engineering, Shanghai University, Shanghai, China
| | - Chong-Ke Zhao
- Department of Medical Ultrasound, Shanghai Tenth People's Hospital, Ultrasound Research and Education Institute, Tongji University School of Medicine, Shanghai, China
| | - Xiao-Long Li
- Department of Medical Ultrasound, Shanghai Tenth People's Hospital, Ultrasound Research and Education Institute, Tongji University School of Medicine, Shanghai, China
| | - Xiao-Wan Bo
- Department of Medical Ultrasound, Shanghai Tenth People's Hospital, Ultrasound Research and Education Institute, Tongji University School of Medicine, Shanghai, China
| | - Wen-Wen Yue
- Department of Medical Ultrasound, Shanghai Tenth People's Hospital, Ultrasound Research and Education Institute, Tongji University School of Medicine, Shanghai, China
| | - Qi Zhang
- Shanghai Institute for Advanced Communication and Data Science, School of Communication and Information Engineering, Shanghai University, Shanghai, China
| | - Jun Shi
- Shanghai Institute for Advanced Communication and Data Science, School of Communication and Information Engineering, Shanghai University, Shanghai, China
| | - Hui-Xiong Xu
- Department of Medical Ultrasound, Shanghai Tenth People's Hospital, Ultrasound Research and Education Institute, Tongji University School of Medicine, Shanghai, China
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17
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Klingensmith JD, Haggard A, Fedewa RJ, Qiang B, Cummings K, DeGrande S, Vince DG, Elsharkawy H. Spectral Analysis of Ultrasound Radiofrequency Backscatter for the Detection of Intercostal Blood Vessels. ULTRASOUND IN MEDICINE & BIOLOGY 2018; 44:1411-1422. [PMID: 29681422 DOI: 10.1016/j.ultrasmedbio.2018.03.007] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2017] [Revised: 02/23/2018] [Accepted: 03/12/2018] [Indexed: 06/08/2023]
Abstract
Spectral analysis of ultrasound radiofrequency backscatter has the potential to identify intercostal blood vessels during ultrasound-guided placement of paravertebral nerve blocks and intercostal nerve blocks. Autoregressive models were used for spectral estimation, and bandwidth, autoregressive order and region-of-interest size were evaluated. Eight spectral parameters were calculated and used to create random forests. An autoregressive order of 10, bandwidth of 6 dB and region-of-interest size of 1.0 mm resulted in the minimum out-of-bag error. An additional random forest, using these chosen values, was created from 70% of the data and evaluated independently from the remaining 30% of data. The random forest achieved a predictive accuracy of 92% and Youden's index of 0.85. These results suggest that spectral analysis of ultrasound radiofrequency backscatter has the potential to identify intercostal blood vessels. (jokling@siue.edu) © 2018 World Federation for Ultrasound in Medicine and Biology.
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Affiliation(s)
- Jon D Klingensmith
- Department of Electrical and Computer Engineering, Southern Illinois University Edwardsville, Edwardsville, Illinois, USA.
| | - Asher Haggard
- Department of Electrical and Computer Engineering, Southern Illinois University Edwardsville, Edwardsville, Illinois, USA
| | - Russell J Fedewa
- Department of Biomedical Engineering, The Cleveland Clinic Foundation, Cleveland, Ohio, USA
| | - Beidi Qiang
- Department of Mathematics and Statistics, Southern Illinois University Edwardsville, Edwardsville, Illinois, USA
| | - Kenneth Cummings
- Anesthesiology Institute, The Cleveland Clinic Foundation, Cleveland, Ohio, USA
| | - Sean DeGrande
- Anesthesiology Institute, The Cleveland Clinic Foundation, Cleveland, Ohio, USA
| | - D Geoffrey Vince
- Department of Biomedical Engineering, The Cleveland Clinic Foundation, Cleveland, Ohio, USA
| | - Hesham Elsharkawy
- Anesthesiology Institute, The Cleveland Clinic Foundation, Cleveland, Ohio, USA
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18
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Automated diagnosis of focal liver lesions using bidirectional empirical mode decomposition features. Comput Biol Med 2018; 94:11-18. [PMID: 29353161 DOI: 10.1016/j.compbiomed.2017.12.024] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2017] [Revised: 12/29/2017] [Accepted: 12/29/2017] [Indexed: 12/12/2022]
Abstract
Liver is the heaviest internal organ of the human body and performs many vital functions. Prolonged cirrhosis and fatty liver disease may lead to the formation of benign or malignant lesions in this organ, and an early and reliable evaluation of these conditions can improve treatment outcomes. Ultrasound imaging is a safe, non-invasive, and cost-effective way of diagnosing liver lesions. However, this technique has limited performance in determining the nature of the lesions. This study initiates a computer-aided diagnosis (CAD) system to aid radiologists in an objective and more reliable interpretation of ultrasound images of liver lesions. In this work, we have employed radon transform and bi-directional empirical mode decomposition (BEMD) to extract features from the focal liver lesions. After which, the extracted features were subjected to particle swarm optimization (PSO) technique for the selection of a set of optimized features for classification. Our automated CAD system can differentiate normal, malignant, and benign liver lesions using machine learning algorithms. It was trained using 78 normal, 26 benign and 36 malignant focal lesions of the liver. The accuracy, sensitivity, and specificity of lesion classification were 92.95%, 90.80%, and 97.44%, respectively. The proposed CAD system is fully automatic as no segmentation of region-of-interest (ROI) is required.
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19
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Bharath R, Rajalakshmi P, Mateen MA. Multi-modal framework for automatic detection of diagnostically important regions in nonalcoholic fatty liver ultrasonic images. Biocybern Biomed Eng 2018. [DOI: 10.1016/j.bbe.2018.03.008] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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20
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Faust O, Acharya UR, Meiburger KM, Molinari F, Koh JE, Yeong CH, Kongmebhol P, Ng KH. Comparative assessment of texture features for the identification of cancer in ultrasound images: a review. Biocybern Biomed Eng 2018. [DOI: 10.1016/j.bbe.2018.01.001] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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21
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Automated quantification of ultrasonic fatty liver texture based on curvelet transform and SVD. Biocybern Biomed Eng 2018. [DOI: 10.1016/j.bbe.2017.12.004] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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22
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Documenting and predicting topic changes in Computers in Biology and Medicine: A bibliometric keyword analysis from 1990 to 2017. INFORMATICS IN MEDICINE UNLOCKED 2018. [DOI: 10.1016/j.imu.2018.03.002] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
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23
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Meiburger KM, Acharya UR, Molinari F. Automated localization and segmentation techniques for B-mode ultrasound images: A review. Comput Biol Med 2017; 92:210-235. [PMID: 29247890 DOI: 10.1016/j.compbiomed.2017.11.018] [Citation(s) in RCA: 56] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2017] [Revised: 11/30/2017] [Accepted: 11/30/2017] [Indexed: 12/14/2022]
Abstract
B-mode ultrasound imaging is used extensively in medicine. Hence, there is a need to have efficient segmentation tools to aid in computer-aided diagnosis, image-guided interventions, and therapy. This paper presents a comprehensive review on automated localization and segmentation techniques for B-mode ultrasound images. The paper first describes the general characteristics of B-mode ultrasound images. Then insight on the localization and segmentation of tissues is provided, both in the case in which the organ/tissue localization provides the final segmentation and in the case in which a two-step segmentation process is needed, due to the desired boundaries being too fine to locate from within the entire ultrasound frame. Subsequenly, examples of some main techniques found in literature are shown, including but not limited to shape priors, superpixel and classification, local pixel statistics, active contours, edge-tracking, dynamic programming, and data mining. Ten selected applications (abdomen/kidney, breast, cardiology, thyroid, liver, vascular, musculoskeletal, obstetrics, gynecology, prostate) are then investigated in depth, and the performances of a few specific applications are compared. In conclusion, future perspectives for B-mode based segmentation, such as the integration of RF information, the employment of higher frequency probes when possible, the focus on completely automatic algorithms, and the increase in available data are discussed.
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Affiliation(s)
- Kristen M Meiburger
- Biolab, Department of Electronics and Telecommunications, Politecnico di Torino, Torino, Italy
| | - U Rajendra Acharya
- Department of Electronic & Computer Engineering, Ngee Ann Polytechnic, Singapore; Department of Biomedical Engineering, School of Science and Technology, SUSS University, Singapore; Department of Biomedical Imaging, Faculty of Medicine, University of Malaya, Kuala Lumpur, Malaysia
| | - Filippo Molinari
- Biolab, Department of Electronics and Telecommunications, Politecnico di Torino, Torino, Italy.
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24
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OH SHULIH, ADAM MUHAMMAD, TAN JENHONG, HAGIWARA YUKI, SUDARSHAN VIDYAK, KOH JOELENWEI, CHUA KUANGCHUA, CHUA KOKPOO, TAN RUSAN, NG EDDIEY. AUTOMATED IDENTIFICATION OF CORONARY ARTERY DISEASE FROM SHORT-TERM 12 LEAD ELECTROCARDIOGRAM SIGNALS BY USING WAVELET PACKET DECOMPOSITION AND COMMON SPATIAL PATTERN TECHNIQUES. J MECH MED BIOL 2017. [DOI: 10.1142/s0219519417400073] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
The occlusion of the coronary arteries commonly known as coronary artery disease (CAD) restricts the normal blood circulation required to the heart muscles, thus results in an irreversible myocardial damage or death (myocardial infarction). Clinically, electrocardiogram (ECG) is performed as a primary diagnostic tool to capture these cardiac activities and detect the presence of CAD. However, the use of computer-aided techniques can reduce the visual burden and manual time required for the analysis of complex ECG signals in order to identify the CAD affected subjects from normal ones. Therefore, in this study, a novel computer-aided technique is proposed using 2[Formula: see text]s of 12 lead ECG signals for the identification of CAD affected patients. Each of the 2[Formula: see text]s 12 lead ECG signal beats (3791 normal and 12308 CAD ECG signal beats) are implemented with four levels of wavelet packet decomposition (WPD) to obtain various coefficients. Using the fourth-level coefficients obtained for each lead ECG signal beat, new 2[Formula: see text]s. ECG signal beats are reconstructed. Later, the reconstructed signals are split into two-fold data sets, in which one set is used for acquiring common spatial pattern (CSP) filter and the other for obtaining features vector (vice versa). The obtained features are one by one fed into k-nearest neighbors (KNN) classifier for automated classification. The proposed system yielded maximum average classification results of 99.65% accuracy, 99.64% sensitivity and 99.7% specificity using 10 features. Our proposed algorithm is highly efficient and can be used by the clinicians as an aiding system in their CAD diagnosis, thus, assisting in faster treatment and avoiding the progression of CAD condition.
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Affiliation(s)
- SHU LIH OH
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - MUHAMMAD ADAM
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - JEN HONG TAN
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - YUKI HAGIWARA
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - VIDYA K. SUDARSHAN
- Department of Biomedical Engineering, School of Science and Technology, Singapore University of Social Science, 599491, Singapore
- School of Electrical and Computer Engineering, University of Newcastle, Singapore
| | - JOEL EN WEI KOH
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - KUANG CHUA CHUA
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - KOK POO CHUA
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - RU SAN TAN
- Department of Cardiology, National Heart Centre, Singapore
| | - EDDIE Y. K. NG
- School of Mechanical and Aerospace Engineering, Nanyang Technological University, Singapore
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25
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Abstract
Diabetes mellitus (DM) is a critical and long-term disorder due to the insufficient production of insulin by the pancreas or ineffective use of insulin by the body. Importantly, cardiovascular disease (CVD) has long been thought to be linked with diabetes. Despite more diabetic individuals surviving from better medications and treatments, there has been significant rise in the morbidity and mortality from CVD. Indeed, the classification of DM based on the electrocardiogram signals of the heart will be an advantageous system. Further, computer-aided classification of DM with integrated algorithms may enhance the execution of the system. In this paper, we have reviewed various studies using heart rate variability signals for automated classification of diabetes. Furthermore, the different techniques used to extract the features and the efficiency of the classification systems are discussed.
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Affiliation(s)
- MUHAMMAD ADAM
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - JEN HONG TAN
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - EDDIE Y. K. NG
- School of Mechanical and Aerospace Engineering, Nanyang Technological University, Singapore
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26
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SUDARSHAN VIDYAK, KOH JOELEW, TAN JENHONG, HAGIWARA YUKI, CHUA KUANGCHUA, NG EDDIEYK, TONG LOUIS. PERFORMANCE EVALUATION OF DRY EYE DETECTION SYSTEM USING HIGHER-ORDER SPECTRA FEATURES FOR DIFFERENT NOISE LEVELS IN IR THERMAL IMAGES. J MECH MED BIOL 2017. [DOI: 10.1142/s0219519417400103] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
The enhanced tear film evaporation and diminished tear production causes a dry eye (DE) condition. A non-invasive infrared (IR) thermography is most commonly used as a diagnostic tool for diagnosis of DE. However, the availability of high-quality IR thermal camera at low cost is difficult. Hence, an efficient DE detection system which can perform efficiently by using low-cost and low-quality images instead of conventional IR images would be a significant contribution. Therefore, in this work, we have evaluated the performance of automated non-invasive DE detection system using low-quality images obtained by adding different levels of noise to high-quality IR images. In this work, the performances of two non-linear higher-order spectra (HOS) cumulants and bispectrum features are compared. These features are extracted from the IR images with different levels of Gaussian noise. Principal component analysis (PCA) is performed on these extracted features and they are ranked using [Formula: see text]-value and later fed to different classifiers. We have achieved the accuracies, sensitivities and specificities of: (i) 86.90%, 85.71% and 88.10%, with noise level 0 using 24 bispectrum features, and (ii) 80.95%, 85.71% and 76.19%, with noise level 10 using 15 bispectrum features for right eye IR images. This study exhibits that even in the presence of high levels of noise, the detection of DE is possible and our proposed method performs efficiently using HOS bispectrum features. Thus, our proposed method can be used to detect DE using low-quality and inexpensive cameras instead of high-cost IR camera.
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Affiliation(s)
- VIDYA K. SUDARSHAN
- Department of Biomedical Engineering, School of Science and Technology, Singapore University of Social Science, Singapore City 599491, Singapore
- School of Electrical and Computer Engineering, University of Newcastle, Singapore City 038986, Singapore
| | - JOEL E. W. KOH
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore City 599489, Singapore
| | - JEN HONG TAN
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore City 599489, Singapore
| | - YUKI HAGIWARA
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore City 599489, Singapore
| | - KUANG CHUA CHUA
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore City 599489, Singapore
| | - EDDIE Y. K. NG
- School of Mechanical and Aerospace Engineering, Nanyang Technological University, Singapore City 639798, Singapore
| | - LOUIS TONG
- Singapore Eye Research Institute, Singapore City 168751, Singapore
- Singapore National Eye Center, Singapore City 168751, Singapore
- Duke-NUS Graduate Medical School, Singapore City 169857, Singapore
- Yong Loo Lin School of Medicine, National University of Singapore, Singapore City 117597, Singapore
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27
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OH SHULIH, HAGIWARA YUKI, ADAM MUHAMMAD, SUDARSHAN VIDYAK, KOH JOELEW, TAN JENHONG, CHUA CHUAK, TAN RUSAN, NG EDDIEYK. SHOCKABLE VERSUS NONSHOCKABLE LIFE-THREATENING VENTRICULAR ARRHYTHMIAS USING DWT AND NONLINEAR FEATURES OF ECG SIGNALS. J MECH MED BIOL 2017. [DOI: 10.1142/s0219519417400048] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Shockable ventricular arrhythmias (VAs) such as ventricular tachycardia (VT) and ventricular fibrillation (VFib) are the life-threatening conditions requiring immediate attention. Cardiopulmonary resuscitation (CPR) and defibrillation are the significant immediate recommended treatments for these shockable arrhythmias to obtain the return of spontaneous circulation. However, accurate classification of these shockable VAs from nonshockable ones is the key step during defibrillation by automated external defibrillator (AED). Therefore, in this work, we have proposed a novel algorithm for an automated differentiation of shockable and nonshockable VAs from electrocardiogram (ECG) signal. The ECG signals are segmented into 5, 8 and 10[Formula: see text]s. These segmented ECGs are subjected to four levels of discrete wavelet transformation (DWT). Various nonlinear features such as approximate entropy ([Formula: see text], signal energy ([Formula: see text]), Fuzzy entropy ([Formula: see text]), Kolmogorov Sinai entropy ([Formula: see text], permutation entropy ([Formula: see text]), Renyi entropy ([Formula: see text]), sample entropy ([Formula: see text]), Shannon entropy ([Formula: see text]), Tsallis entropy ([Formula: see text]), wavelet entropy ([Formula: see text]), fractal dimension ([Formula: see text]), Kolmogorov complexity ([Formula: see text]), largest Lyapunov exponent ([Formula: see text]), recurrence quantification analysis (RQA) parameters ([Formula: see text]), Hurst exponent ([Formula: see text]), activity entropy ([Formula: see text]), Hjorth complexity ([Formula: see text]), Hjorth mobility ([Formula: see text]), modified multi scale entropy ([Formula: see text]) and higher order statistics (HOS) bispectrum ([Formula: see text]) are obtained from the DWT coefficients. Later, these features are subjected to sequential forward feature selection (SFS) method and selected features are then ranked using seven ranking methods namely, Bhattacharyya distance, entropy, Fuzzy maximum relevancy and minimum redundancy (mRMR), receiver operating characteristic (ROC), Student’s [Formula: see text]-test, Wilcoxon and ReliefF. These ranked features are supplied independently into the [Formula: see text]-Nearest Neighbor (kNN) classifier. Our proposed system achieved maximum accuracy, sensitivity and specificity of (i) 97.72%, 94.79% and 98.74% for 5[Formula: see text]s, (ii) 98.34%, 95.49% and 99.14% for 8[Formula: see text]s and (iii) 98.32%, 95.16% and 99.20% for 10[Formula: see text]s of ECG segments using only ten features. The integration of the proposed algorithm with ECG acquisition systems in the intensive care units (ICUs) can help the clinicians to decipher the shockable and nonshockable life-threatening arrhythmias accurately. Hence, doctors can use the CPR or AED immediately and increase the chance of survival during shockable life-threatening arrhythmia intervals.
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Affiliation(s)
- SHU LIH OH
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - YUKI HAGIWARA
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - MUHAMMAD ADAM
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - VIDYA K. SUDARSHAN
- Department of Biomedical Engineering, School of Science and Technology, Singapore University of Social Sciences, Singapore
- School of Electrical and Computer Engineering, University of Newcastle, Singapore
| | - JOEL EW KOH
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - JEN HONG TAN
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - CHUA K. CHUA
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - RU SAN TAN
- Department of Cardiology, National Heart Centre, Singapore
| | - EDDIE Y. K. NG
- School of Mechanical and Aerospace Engineering, Nanyang Technological University, Singapore
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28
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MURALIDHAR BAIRY G, NIRANJAN UC, OH SHULIH, KOH JOELEW, SUDARSHAN VIDYAK, TAN JENHONG, HAGIWARA YUKI, NG EDDIEYK. ALCOHOLIC INDEX USING NON-LINEAR FEATURES EXTRACTED FROM DIFFERENT FREQUENCY BANDS. J MECH MED BIOL 2017. [DOI: 10.1142/s0219519417400097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Alcoholism is a complex condition that mainly disturbs the neuronal networks in Central Nervous System (CNS). This disorder not only disturbs the brain, but also affects the behavior, emotions, and cognitive judgements. Electroencephalography (EEG) is a valuable tool to examine the neuropsychiatric disorders like alcoholism. The EEG is a well-established modality to diagnose the electrical activity produced by the populations of neurons in cerebral cortex. However, EEG signals are non-linear in nature; hence very challenging to interpret the valuable information from them using linear methods. Thus, using non-linear methods to analyze EEG signals can be beneficial in order to predict the brain signals condition. This paper presents a computer-aided diagnostic method for the detection of alcoholic EEG signals from normal by employing the non-linear techniques. First, the EEG signals are subjected to six levels of Wavelet Packet Decomposition (WPD) to obtain seven wavebands (delta ([Formula: see text]), theta ([Formula: see text]), lower alpha (la), upper alpha (ua), lower beta (lb), upper beta (ub), lower gamma (lg)). From each wavebands (activity bands), 19 non-linear features such as Recurrence Quantification Analysis (RQA) ([Formula: see text]), Approximate Entropy ([Formula: see text]), Energy ([Formula: see text]), Fractal Dimension (FD) ([Formula: see text]), Permutation Entropy ([Formula: see text]), Detrended Fluctuation Analysis ([Formula: see text]), Hurst Exponent ([Formula: see text]), Largest Lyapunov Exponent ([Formula: see text]), Sample Entropy ([Formula: see text]), Shannon’s Entropy ([Formula: see text]), Renyi’s entropy ([Formula: see text]), Tsalli’s entropy ([Formula: see text]), Fuzzy entropy ([Formula: see text]), Wavelet entropy ([Formula: see text]), Kolmogorov–Sinai entropy ([Formula: see text]), Modified Multiscale Entropy ([Formula: see text]), Hjorth’s parameters (activity ([Formula: see text]), mobility ([Formula: see text]), and complexity ([Formula: see text])) are extracted. The extracted features are then ranked using Bhattacharyya, Entropy, Fuzzy entropy-based Max-Relevancy and Min-Redundancy (mRMR), Receiver Operating Characteristic (ROC), [Formula: see text]-test, and Wilcoxon. These ranked features are given to train Support Vector Machine (SVM) classifier. The SVM classifier with radial basis function (RBF) achieved 95.41% accuracy, 93.33% sensitivity and 97.50% specificity using four non-linear features ranked by Wilcoxon method. In addition, an integrated index called Alcoholic Index (ALCOHOLI) is developed using highly ranked two features for identification of normal and alcoholic EEG signals using a single number. This system is rapid, efficient, and inexpensive and can be employed as an EEG analysis assisting system by clinicians in the detection of alcoholism. In addition, the proposed system can be used in rehabilitation centers to evaluate person with alcoholism over time and observe the outcome of treatment provided for reducing or reversing the impact of the condition on the brain.
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Affiliation(s)
- G. MURALIDHAR BAIRY
- Department of Biomedical Engineering, Manipal Institute of Technology, Manipal
| | - U. C. NIRANJAN
- Department of Biomedical Engineering & Electronics and Communication, Adjunct Faculty, Manipal Institute of Technology, Manipal
| | - SHU LIH OH
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore 599489, Singapore
| | - JOEL E. W. KOH
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore 599489, Singapore
| | - VIDYA K. SUDARSHAN
- Department of Biomedical Engineering, School of Science and Technology, Singapore University of Social Sciences, Singapore
- School of Electrical and Computer Engineering, University of Newcastle, Singapore
| | - JEN HONG TAN
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore 599489, Singapore
| | - YUKI HAGIWARA
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore 599489, Singapore
| | - EDDIE Y. K. NG
- School of Mechanical and Aerospace Engineering, Nanyang Technological University, Singapore
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29
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BHAT SHREYA, ADAM MUHAMMAD, HAGIWARA YUKI, NG EDDIEY. THE BIOPHYSICAL PARAMETER MEASUREMENTS FROM PPG SIGNAL. J MECH MED BIOL 2017. [DOI: 10.1142/s021951941740005x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Early investigation on blood circulation by Hertzman (1937) leads to the observation of vital body signs such as respiration rate, heart rate (HR), blood oxygenation and vascular assessment using photoplethysmographic (PPG) device. PPG is a noninvasive, painless optical technique used to monitor the pulsations linked to alteration in the blood volume. The PPG waveform is a summation of pulsatile and nonpulsatile components and contains useful information about the physiological systems. With the breakthrough in technology and development of powerful analytical tools, PPG devices are constantly being used in advanced medical equipments such as smart-watches and smart-wristbands for HR monitoring, pulse oximeters for measuring respiratory rate and noncontact PPG device for blood oxygen saturation measurement. This paper presents description on PPG and its characteristic waveform and working principle. It also includes brief explanation on nonlinear analysis of PPG signals and salient applications of PPG followed by its advantages and limitations.
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Affiliation(s)
- SHREYA BHAT
- Department of Psychiatry, St John’s Research Institute, Bangalore, India
| | - MUHAMMAD ADAM
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - YUKI HAGIWARA
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - EDDIE Y. K. NG
- School of Mechanical and Aerospace Engineering, Nanyang Technological University, Singapore
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30
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Chen Y, Yue X, Fujita H, Fu S. Three-way decision support for diagnosis on focal liver lesions. Knowl Based Syst 2017. [DOI: 10.1016/j.knosys.2017.04.008] [Citation(s) in RCA: 66] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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31
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Takahashi R, Kajikawa Y. Computer-aided diagnosis: A survey with bibliometric analysis. Int J Med Inform 2017; 101:58-67. [DOI: 10.1016/j.ijmedinf.2017.02.004] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2016] [Revised: 01/28/2017] [Accepted: 02/04/2017] [Indexed: 12/18/2022]
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32
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Ito K, Yoshida K, Maruyama H, Mamou J, Yamaguchi T. Acoustic Impedance Analysis with High-Frequency Ultrasound for Identification of Fatty Acid Species in the Liver. ULTRASOUND IN MEDICINE & BIOLOGY 2017; 43:700-711. [PMID: 28040242 DOI: 10.1016/j.ultrasmedbio.2016.11.011] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2016] [Revised: 10/21/2016] [Accepted: 11/14/2016] [Indexed: 06/06/2023]
Abstract
Acoustic properties of free fatty acids present in the liver were studied as a possible basis for non-invasive ultrasonic diagnosis of non-alcoholic steatohepatitis. Acoustic impedance was measured for the following types of tissue samples: Four pathologic types of mouse liver, five kinds of FFAs in solvent and five kinds of FFAs in cultured Huh-7 cells. A transducer with an 80-MHz center frequency was incorporated into a scanning acoustic microscopy system. Acoustic impedance was calculated from the amplitude of the signal reflected from the specimen surface. The Kruskal-Wallis test revealed statistically significant differences (p < 0.01) in acoustic impedance not only among pathologic types, but also among the FFAs in solvent and in cultured Huh-7 cells. These results suggest that each of the FFAs, especially palmitate, oleate and palmitoleate acid, can be distinguished from each other, regardless of whether they were in solution or absorbed by cells.
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Affiliation(s)
- Kazuyo Ito
- Graduate School of Engineering, Chiba University, Inage, Chiba, Chiba, Japan.
| | - Kenji Yoshida
- Center for Frontier Medical Engineering, Chiba University, Inage, Chiba, Chiba, Japan
| | - Hitoshi Maruyama
- Graduate School of Medicine, Chiba University, Chuou, Chiba, Chiba, Japan
| | - Jonathan Mamou
- F. L. Lizzi Center for Biomedical Engineering, Riverside Research Institute, New York, New York, USA
| | - Tadashi Yamaguchi
- Center for Frontier Medical Engineering, Chiba University, Inage, Chiba, Chiba, Japan
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33
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Computer aided diagnosis of Coronary Artery Disease, Myocardial Infarction and carotid atherosclerosis using ultrasound images: A review. Phys Med 2017; 33:1-15. [DOI: 10.1016/j.ejmp.2016.12.005] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/25/2016] [Revised: 11/21/2016] [Accepted: 12/04/2016] [Indexed: 02/08/2023] Open
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34
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Bharti P, Mittal D, Ananthasivan R. Computer-aided Characterization and Diagnosis of Diffuse Liver Diseases Based on Ultrasound Imaging: A Review. ULTRASONIC IMAGING 2017; 39:33-61. [PMID: 27097589 DOI: 10.1177/0161734616639875] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Diffuse liver diseases, such as hepatitis, fatty liver, and cirrhosis, are becoming a leading cause of fatality and disability all over the world. Early detection and diagnosis of these diseases is extremely important to save lives and improve effectiveness of treatment. Ultrasound imaging, a noninvasive diagnostic technique, is the most commonly used modality for examining liver abnormalities. However, the accuracy of ultrasound-based diagnosis depends highly on expertise of radiologists. Computer-aided diagnosis systems based on ultrasound imaging assist in fast diagnosis, provide a reliable "second opinion" for experts, and act as an effective tool to measure response of treatment on patients undergoing clinical trials. In this review, we first describe appearance of liver abnormalities in ultrasound images and state the practical issues encountered in characterization of diffuse liver diseases that can be addressed by software algorithms. We then discuss computer-aided diagnosis in general with features and classifiers relevant to diffuse liver diseases. In later sections of this paper, we review the published studies and describe the key findings of those studies. A concise tabular summary comparing image database, features extraction, feature selection, and classification algorithms presented in the published studies is also exhibited. Finally, we conclude with a summary of key findings and directions for further improvements in the areas of accuracy and objectiveness of computer-aided diagnosis.
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Affiliation(s)
- Puja Bharti
- 1 Department of Electrical and Instrumentation Engineering, Thapar University, Patiala, India
| | - Deepti Mittal
- 1 Department of Electrical and Instrumentation Engineering, Thapar University, Patiala, India
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35
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Functional Region Annotation of Liver CT Image Based on Vascular Tree. BIOMED RESEARCH INTERNATIONAL 2016; 2016:5428737. [PMID: 27891516 PMCID: PMC5116550 DOI: 10.1155/2016/5428737] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/02/2016] [Revised: 07/24/2016] [Accepted: 08/04/2016] [Indexed: 12/29/2022]
Abstract
Anatomical analysis of liver region is critical in diagnosis and treatment of liver diseases. The reports of liver region annotation are helpful for doctors to precisely evaluate liver system. One of the challenging issues is to annotate the functional regions of liver through analyzing Computed Tomography (CT) images. In this paper, we propose a vessel-tree-based liver annotation method for CT images. The first step of the proposed annotation method is to extract the liver region including vessels and tumors from the CT scans. And then a 3-dimensional thinning algorithm is applied to obtain the spatial skeleton and geometric structure of liver vessels. With the vessel skeleton, the topology of portal veins is further formulated by a directed acyclic graph with geometrical attributes. Finally, based on the topological graph, a hierarchical vascular tree is constructed to divide the liver into eight segments according to Couinaud classification theory and thereby annotate the functional regions. Abundant experimental results demonstrate that the proposed method is effective for precise liver annotation and helpful to support liver disease diagnosis.
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36
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Automated characterization of fatty liver disease and cirrhosis using curvelet transform and entropy features extracted from ultrasound images. Comput Biol Med 2016; 79:250-258. [PMID: 27825038 DOI: 10.1016/j.compbiomed.2016.10.022] [Citation(s) in RCA: 64] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2016] [Revised: 10/26/2016] [Accepted: 10/27/2016] [Indexed: 02/07/2023]
Abstract
Fatty liver disease (FLD) is reversible disease and can be treated, if it is identified at an early stage. However, if diagnosed at the later stage, it can progress to an advanced liver disease such as cirrhosis which may ultimately lead to death. Therefore, it is essential to detect it at an early stage before the disease progresses to an irreversible stage. Several non-invasive computer-aided techniques are proposed to assist in the early detection of FLD and cirrhosis using ultrasound images. In this work, we are proposing an algorithm to discriminate automatically the normal, FLD and cirrhosis ultrasound images using curvelet transform (CT) method. Higher order spectra (HOS) bispectrum, HOS phase, fuzzy, Kapoor, max, Renyi, Shannon, Vajda and Yager entropies are extracted from CT coefficients. These extracted features are subjected to locality sensitive discriminant analysis (LSDA) feature reduction method. Then these LSDA coefficients ranked based on F-value are fed to different classifiers to choose the best performing classifier using minimum number of features. Our proposed technique can characterize normal, FLD and cirrhosis using probabilistic neural network (PNN) classifier with an accuracy of 97.33%, specificity of 100.00% and sensitivity of 96.00% using only six features. In addition, these chosen features are used to develop a liver disease index (LDI) to differentiate the normal, FLD and cirrhosis classes using a single number. This can significantly help the radiologists to discriminate FLD and cirrhosis in their routine liver screening.
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37
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Multifeature analysis of an ultrasound quantitative diagnostic index for classifying nonalcoholic fatty liver disease. Sci Rep 2016; 6:35083. [PMID: 27734972 PMCID: PMC5062088 DOI: 10.1038/srep35083] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2016] [Accepted: 09/26/2016] [Indexed: 12/11/2022] Open
Abstract
Nonalcoholic fatty liver disease (NAFLD) is a chronic liver disease related to metabolic syndrome. This study applied an integrated analysis based on texture, backscattering, and attenuation features in ultrasound imaging with the aim of assessing the severity of NAFLD. Ultrasound radiofrequency data obtained from 394 clinical cases were analyzed to extract three texture features (autocorrelation, sum average, and sum variance), the signal-to-noise ratio (SNR), and the slope of the center-frequency downshift (CFDS slope). The texture, SNR, and CFDS slope were combined to produce a quantitative diagnostic index (QDI) that ranged from 0 to 6. We trained the QDI using training data and then applied it to test data to assess its utility. In training data, the areas (AUCs) under the receiver operating characteristic curves for NAFLD and severe NAFLD were 0.81 and 0.84, respectively. In test data, the AUCs were 0.73 and 0.81 for NAFLD and severe NAFLD, respectively. The QDI was able to distinguish severe NAFLD and a normal liver from mild NAFLD, and it was significantly correlated with metabolic factors. This study explored the potential of using the QDI to supply information on different physical characteristics of liver tissues for advancing the ability to grade NAFLD.
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38
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Effects of Fatty Infiltration of the Liver on the Shannon Entropy of Ultrasound Backscattered Signals. ENTROPY 2016. [DOI: 10.3390/e18090341] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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39
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Banzato T, Fiore E, Morgante M, Manuali E, Zotti A. Texture analysis of B-mode ultrasound images to stage hepatic lipidosis in the dairy cow: A methodological study. Res Vet Sci 2016; 108:71-5. [PMID: 27663373 DOI: 10.1016/j.rvsc.2016.08.007] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2016] [Revised: 08/02/2016] [Accepted: 08/22/2016] [Indexed: 11/19/2022]
Abstract
Hepatic lipidosis is the most diffused hepatic disease in the lactating cow. A new methodology to estimate the degree of fatty infiltration of the liver in lactating cows by means of texture analysis of B-mode ultrasound images is proposed. B-mode ultrasonography of the liver was performed in 48 Holstein Friesian cows using standardized ultrasound parameters. Liver biopsies to determine the triacylglycerol content of the liver (TAGqa) were obtained from each animal. A large number of texture parameters were calculated on the ultrasound images by means of a free software. Based on the TAGqa content of the liver, 29 samples were classified as mild (TAGqa<50mg/g), 6 as moderate (50mg/g<TAGqa>100mg/g) and 13 as severe (TAG>100mg/g) in steatosis. Stepwise linear regression analysis was performed to predict the TAGqa content of the liver (TAGpred) from the texture parameters calculated on the ultrasound images. A five-variable model was used to predict the TAG content from the ultrasound images. The regression model explained 83.4% of the variance. An area under the curve (AUC) of 0.949 was calculated for <50mg/g vs >50mg/g of TAGqa; using an optimal cut-off value of 72mg/g TAGpred had a sensitivity of 86.2% and a specificity of 84.2%. An AUC of 0.978 for <100mg/g vs >100mg/g of TAGqa was calculated; using an optimal cut-off value of 89mg/g, TAGpred sensitivity was 92.3% and specificity was 88.6%. Texture analysis of B-mode ultrasound images may therefore be used to accurately predict the TAG content of the liver in lactating cows.
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Affiliation(s)
- Tommaso Banzato
- Department of Animal Medicine, Production and Health, University of Padua, Viale dell'Università 16, Agripolis, 35020 Legnaro, Padua, Italy.
| | - Enrico Fiore
- Department of Animal Medicine, Production and Health, University of Padua, Viale dell'Università 16, Agripolis, 35020 Legnaro, Padua, Italy.
| | - Massimo Morgante
- Department of Animal Medicine, Production and Health, University of Padua, Viale dell'Università 16, Agripolis, 35020 Legnaro, Padua, Italy.
| | - Elisabetta Manuali
- Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche, Via G. Salvemini, 1, 06126 Perugia, Italy.
| | - Alessandro Zotti
- Department of Animal Medicine, Production and Health, University of Padua, Viale dell'Università 16, Agripolis, 35020 Legnaro, Padua, Italy.
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40
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FAUST OLIVER, ACHARYA URAJENDRA, NG EYK, FUJITA HAMIDO. A REVIEW OF ECG-BASED DIAGNOSIS SUPPORT SYSTEMS FOR OBSTRUCTIVE SLEEP APNEA. J MECH MED BIOL 2016. [DOI: 10.1142/s0219519416400042] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Humans need sleep. It is important for physical and psychological recreation. During sleep our consciousness is suspended or least altered. Hence, our ability to avoid or react to disturbances is reduced. These disturbances can come from external sources or from disorders within the body. Obstructive Sleep Apnea (OSA) is such a disorder. It is caused by obstruction of the upper airways which causes periods where the breathing ceases. In many cases, periods of reduced breathing, known as hypopnea, precede OSA events. The medical background of OSA is well understood, but the traditional diagnosis is expensive, as it requires sophisticated measurements and human interpretation of potentially large amounts of physiological data. Electrocardiogram (ECG) measurements have the potential to reduce the cost of OSA diagnosis by simplifying the measurement process. On the down side, detecting OSA events based on ECG data is a complex task which requires highly skilled practitioners. Computer algorithms can help to detect the subtle signal changes which indicate the presence of a disorder. That approach has the following advantages: computers never tire, processing resources are economical and progress, in the form of better algorithms, can be easily disseminated as updates over the internet. Furthermore, Computer-Aided Diagnosis (CAD) reduces intra- and inter-observer variability. In this review, we adopt and support the position that computer based ECG signal interpretation is able to diagnose OSA with a high degree of accuracy.
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Affiliation(s)
- OLIVER FAUST
- Faculty of Arts, Computing, Engineering and Sciences, Sheffield Hallam University, UK
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41
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FAUST OLIVER, NG EYK. COMPUTER AIDED DIAGNOSIS FOR CARDIOVASCULAR DISEASES BASED ON ECG SIGNALS: A SURVEY. J MECH MED BIOL 2016. [DOI: 10.1142/s0219519416400017] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The interpretation of Electroencephalography (ECG) signals is difficult, because even subtle changes in the waveform can indicate a serious heart disease. Furthermore, these waveform changes might not be present all the time. As a consequence, it takes years of training for a medical practitioner to become an expert in ECG-based cardiovascular disease diagnosis. That training is a major investment in a specific skill. Even with expert ability, the signal interpretation takes time. In addition, human interpretation of ECG signals causes interoperator and intraoperator variability. ECG-based Computer-Aided Diagnosis (CAD) holds the promise of improving the diagnosis accuracy and reducing the cost. The same ECG signal will result in the same diagnosis support regardless of time and place. This paper introduces both the techniques used to realize the CAD functionality and the methods used to assess the established functionality. This survey aims to instill trust in CAD of cardiovascular diseases using ECG signals by introducing both a conceptional overview of the system and the necessary assessment methods.
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Affiliation(s)
- OLIVER FAUST
- Faculty of Arts, Computing, Engineering and Sciences, Sheffield Hallam University, Sheffield, UK
| | - E. Y. K. NG
- School of Mechanical & Aerospace Engineering, College of Engineering, Nanyang Technological University, Singapore
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42
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ROSATI SAMANTA, MEIBURGER KRISTENMARIKO, BALESTRA GABRIELLA, ACHARYA URAJENDRA, MOLINARI FILIPPO. CAROTID WALL MEASUREMENT AND ASSESSMENT BASED ON PIXEL-BASED AND LOCAL TEXTURE DESCRIPTORS. J MECH MED BIOL 2016. [DOI: 10.1142/s0219519416400066] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Aim of this paper is to develop an automated system for the classification and characterization of carotid wall status and to develop a robust system based on local texture descriptors. A database of 200 longitudinal ultrasound images of carotid artery is used. One-hundred images with Intima-Media Thickness (IMT) value higher than 0.8[Formula: see text]mm are considered as high risk. Six different rectangular pixel neighborhoods were considered: four areas centered on the selected element, with sizes [Formula: see text], [Formula: see text], [Formula: see text], and [Formula: see text] pixels, and two noncentered areas with sizes [Formula: see text] pixels upwards and downwards. We have extracted various texture descriptors (31 based on the co-occurrence gray level matrix, 13 based on the spatial gray level dependence matrix, and 20 based on the gray level run length matrix (GLRLM) from neighborhood. We have used Quick Reduct Algorithm to select 12 most discriminant features from extracted 211 features. Each pixel is then assigned to the vessel lumen, to the intima-media complex, or to the adventitia by using an integrated system of three feed-forward neural networks. The boundaries between the three regions are used to estimate the IMT value. The texture features associated with GLRLM are found to be clinically most significant. We have obtained an overall classification accuracy of 79.5%, sensitivity of 87%, and specificity of 72%. We observed a unique classification pattern between low risk and high risk images: in the latter ones, a considerable number of pixels of the intima–media complex ([Formula: see text]) was classified as belonging to the adventitia. This percentage is statistically higher than that of low risk images ([Formula: see text]; [Formula: see text]). Locally extracted and pixel-based descriptors are able to capture the inner characteristics of the carotid wall. The presence of misclassified pixels in the intima–media complex is associated to higher cardiovascular risk.
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Affiliation(s)
- SAMANTA ROSATI
- Biolab, Department of Electronics and Telecommunications, Politecnico di Torino, Torino, Italy
| | | | - GABRIELLA BALESTRA
- Biolab, Department of Electronics and Telecommunications, Politecnico di Torino, Torino, Italy
| | - U. RAJENDRA ACHARYA
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
- Department of Biomedical Engineering, Faculty of Engineering, University of Malaya, Malaysia
- Department of Biomedical Engineering, School of Science and Technology, SIM University, Singapore
| | - FILIPPO MOLINARI
- Biolab, Department of Electronics and Telecommunications, Politecnico di Torino, Torino, Italy
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43
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MEIBURGER KRISTENM, ROSATI SAMANTA, BALESTRA GABRIELLA, ACHARYA URAJENDRA, MOLINARI FILIPPO. ULTRASOUND B-MODE DESCRIPTORS AND THEIR ASSOCIATION TO AGE AND AUTOMATED IMT AND IMT VARIABILITY. J MECH MED BIOL 2016. [DOI: 10.1142/s0219519416400078] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The aim of this paper is to evaluate the association between four simple B-mode image descriptors and age, to further assess the association between the descriptors and automated intima-media thickness (IMT) and intima-media thickness variability (IMTV) measurements, and finally analyze the predictive value of the B-mode image descriptors. A database of 1774 images of the carotid artery is used to manually calculate the contrast and the signal-to-noise ratio (SNR) between the (i) intima-media complex and lumen, and (ii) adventitial wall layer and intima-media complex. A subset of 200 images is then used to automatically measure the IMT and IMTV parameters with a previously developed algorithm. Correlation studies and logistic regression analysis are then performed. The contrast and SNR between the intima-media complex and lumen (contrastIM and SNRIM) are 112.691[Formula: see text][Formula: see text][Formula: see text]247.427 and 19.542[Formula: see text][Formula: see text][Formula: see text]6.236, respectively; whereas between the adventitial wall layer and intima-media complex the parameters (contrastADV and SNRADV) are found to be 1.684[Formula: see text][Formula: see text][Formula: see text]1.182 and 32.859[Formula: see text][Formula: see text][Formula: see text]10.766, respectively. Pearson’s rho is significantly different from zero considering the contrastIM and the SNRADV descriptors when tested for the association with age. The automated IMT and IMTV measurements are 0.796[Formula: see text][Formula: see text][Formula: see text]0.152[Formula: see text]mm and 0.096[Formula: see text][Formula: see text][Formula: see text]0.044[Formula: see text]mm, respectively. Testing the association with the IMT and IMTV measurements yielded Pearson’s rho values which are significantly different from zero except in the case of contrastIM for the IMTV measurement. The logistic regression results showed the IMTV measurement and the SNR descriptor between the intima-media complex and the lumen has a significant predictive value. Considering the association between the IMT and IMTV, the B-mode image descriptors showed a strong and statistically significant association. Moreover, the SNR between the intima-media complex and lumen is found to be a predictive variable in demonstrating its effectiveness as an image descriptor.
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Affiliation(s)
- KRISTEN M. MEIBURGER
- Biolab, Department of Electronics and Telecommunications, Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129, Torino, Italy
| | - SAMANTA ROSATI
- Biolab, Department of Electronics and Telecommunications, Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129, Torino, Italy
| | - GABRIELLA BALESTRA
- Biolab, Department of Electronics and Telecommunications, Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129, Torino, Italy
| | - U. RAJENDRA ACHARYA
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
- Department of Biomedical Engineering, School of Science and Technology, SIM University, Singapore
| | - FILIPPO MOLINARI
- Biolab, Department of Electronics and Telecommunications, Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129, Torino, Italy
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44
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Accuracy of rule extraction using a recursive-rule extraction algorithm with continuous attributes combined with a sampling selection technique for the diagnosis of liver disease. INFORMATICS IN MEDICINE UNLOCKED 2016. [DOI: 10.1016/j.imu.2016.10.001] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
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45
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Molinari F, Caresio C, Acharya UR, Mookiah MRK, Minetto MA. Advances in quantitative muscle ultrasonography using texture analysis of ultrasound images. ULTRASOUND IN MEDICINE & BIOLOGY 2015; 41:2520-2532. [PMID: 26026375 DOI: 10.1016/j.ultrasmedbio.2015.04.021] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2014] [Revised: 03/21/2015] [Accepted: 04/27/2015] [Indexed: 06/04/2023]
Abstract
Musculoskeletal ultrasound imaging can be used to investigate the skeletal muscle structure in terms of architecture (thickness, cross-sectional area, fascicle length and fascicle pennation angle) and texture. Gray-scale analysis is commonly used to characterize transverse scans of the muscle. Gray mean value is used to distinguish between normal and pathologic muscles, but it depends on the image acquisition system and its settings. In this study, quantitative ultrasonography was performed on five muscles (biceps brachii, vastus lateralis, rectus femoris, medial gastrocnemius and tibialis anterior) of 20 healthy patients (10 women, 10 men) to assess the characterization performance of higher-order texture descriptors to differentiate genders and muscle types. A total of 53 features (7 first-order descriptors, 24 Haralick features, 20 Galloway features and 2 local binary pattern features) were extracted from each muscle region of interest (ROI) and were used to perform the multivariate linear regression analysis (MANOVA). Our results show that first-order descriptors, Haralick features (energy, entropy and correlation measured along different angles) and local binary pattern (LBP) energy and entropy were highly linked to the gender, whereas Haralick entropy and symmetry, Galloway texture descriptors and LBP entropy helped to distinguish muscle types. Hence, the combination of first-order and higher-order texture descriptors (Haralick, Galloway and LBP) can be used to discriminate gender and muscle types. Therefore, multi-texture analysis may be useful to investigate muscle damage and myopathic disorders.
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Affiliation(s)
- Filippo Molinari
- Biolab, Department of Electronics and Telecommunications, Politecnico di Torino, Turin, Italy.
| | - Cristina Caresio
- Biolab, Department of Electronics and Telecommunications, Politecnico di Torino, Turin, Italy; Division of Endocrinology, Diabetology and Metabolism, Department of Medical Sciences, University of Turin, Turin, Italy
| | - U Rajendra Acharya
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore; Department of Biomedical Engineering, SIM University, Singapore
| | | | - Marco Alessandro Minetto
- Division of Endocrinology, Diabetology and Metabolism, Department of Medical Sciences, University of Turin, Turin, Italy; Division of Physical Medicine and Rehabilitation, Department of Surgical Sciences, University of Turin, Turin, Italy
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