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Liang C, Sun Q, Li J, Ji B, Wu W, Zhang F, Chen Y, Wang C. An interpretable ensemble trees method with joint analysis of static and dynamic features for myocardial infarction detection. Physiol Meas 2024; 45:085006. [PMID: 39025104 DOI: 10.1088/1361-6579/ad6529] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2024] [Accepted: 07/18/2024] [Indexed: 07/20/2024]
Abstract
Objective.In recent years, artificial intelligence-based electrocardiogram (ECG) methods have been massively applied to myocardial infarction (MI). However, the joint analysis of static and dynamic features to achieve accurate and interpretable MI detection has not been comprehensively addressed.Approach.This paper proposes a simplified ensemble tree method with a joint analysis of static and dynamic features to solve this issue for MI detection. Initially, the dynamic features are extracted by modeling the intrinsic dynamics of ECG via dynamic learning in addition to extracting classical static features. Secondly, a two-stage feature selection strategy is designed to identify a few significant features, which substitute the original variables that are employed in constructing the ensemble tree. This approach enhances the discriminative ability by selecting significant static and dynamic features. Subsequently, this paper presents an interpretable classification method named StackTree by introducing a stacked ensemble scheme to modify the ensemble tree simplification algorithm. The representative rules of the raw ensemble trees are selected as the intermediate training data that is used to retrain a decision tree with performance close to that of the source ensemble model. Using this scheme, the significant precision and interpretability of MI detection are thus comprehensively addressed.Main results.The effectiveness of our method in detecting MI is evaluated using the Physikalisch-Technische Bundesanstalt (PTB) and clinical database. The findings suggest that our algorithm outperforms the traditional methods based on a single type of feature. Additionally, it is comparable to the conventional random forest, achieving 97.1% accuracy under the inter-patient framework on the PTB database. Furthermore, feature subsets trained on PTB are validated using the clinical database, resulting in an accuracy of 84.5%. The chosen important features demonstrate that both static and dynamic information have crucial roles in MI detection. Crucially, the proposed method provides clear internal workings in an easy-to-understand visual manner.
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Affiliation(s)
- Chunmiao Liang
- School of Control Science and Engineering, Shandong University, Jinan 250061, People's Republic of China
| | - Qinghua Sun
- School of Control Science and Engineering, Shandong University, Jinan 250061, People's Republic of China
- Center for Intelligent Medical Engineering, Shandong University, Jinan 250061, People's Republic of China
| | - Jiali Li
- School of Control Science and Engineering, Shandong University, Jinan 250061, People's Republic of China
| | - Bing Ji
- School of Control Science and Engineering, Shandong University, Jinan 250061, People's Republic of China
- Center for Intelligent Medical Engineering, Shandong University, Jinan 250061, People's Republic of China
| | - Weiming Wu
- School of Control Science and Engineering, Shandong University, Jinan 250061, People's Republic of China
- Center for Intelligent Medical Engineering, Shandong University, Jinan 250061, People's Republic of China
| | - Fukai Zhang
- School of Control Science and Engineering, Shandong University, Jinan 250061, People's Republic of China
- Center for Intelligent Medical Engineering, Shandong University, Jinan 250061, People's Republic of China
| | - Yuguo Chen
- Department of Emergency, Qilu Hospital of Shandong University, Jinan 250012, People's Republic of China
| | - Cong Wang
- School of Control Science and Engineering, Shandong University, Jinan 250061, People's Republic of China
- Center for Intelligent Medical Engineering, Shandong University, Jinan 250061, People's Republic of China
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Terzi MB, Arikan O. Machine learning based hybrid anomaly detection technique for automatic diagnosis of cardiovascular diseases using cardiac sympathetic nerve activity and electrocardiogram. BIOMED ENG-BIOMED TE 2024; 69:79-109. [PMID: 37823386 DOI: 10.1515/bmt-2022-0406] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2022] [Accepted: 08/25/2023] [Indexed: 10/13/2023]
Abstract
OBJECTIVES Coronary artery diseases (CADs) are the leading cause of death worldwide and early diagnosis is crucial for timely treatment. To address this, our study presents a novel automated Artificial Intelligence (AI)-based Hybrid Anomaly Detection (AIHAD) technique that combines various signal processing, feature extraction, supervised, and unsupervised machine learning methods. By jointly and simultaneously analyzing 12-lead cardiac sympathetic nerve activity (CSNA) and electrocardiogram (ECG) data, the automated AIHAD technique performs fast, early, and accurate diagnosis of CADs. METHODS In order to develop and evaluate the proposed automated AIHAD technique, we utilized the fully labeled STAFF III and PTBD databases, which contain the 12-lead wideband raw recordings non-invasively acquired from 260 subjects. Using these wideband raw recordings, we developed a signal processing technique that simultaneously detects the 12-lead CSNA and ECG signals of all subjects. Using the pre-processed 12-lead CSNA and ECG signals, we developed a time-domain feature extraction technique that extracts the statistical CSNA and ECG features critical for the reliable diagnosis of CADs. Using the extracted discriminative features, we developed a supervised classification technique based on Artificial Neural Networks (ANNs) that simultaneously detects anomalies in the 12-lead CSNA and ECG data. Furthermore, we developed an unsupervised clustering technique based on Gaussian mixture models (GMMs) and Neyman-Pearson criterion, which robustly detects outliers corresponding to CADs. RESULTS Using the automated AIHAD technique, we have, for the first time, demonstrated a significant association between the increase in CSNA signals and anomalies in ECG signals during CADs. The AIHAD technique achieved highly reliable detection of CADs with a sensitivity of 98.48 %, specificity of 97.73 %, accuracy of 98.11 %, positive predictive value of 97.74 %, negative predictive value of 98.47 %, and F1-score of 98.11 %. Hence, the automated AIHAD technique demonstrates superior performance compared to the gold standard diagnostic test ECG in the diagnosis of CADs. Additionally, it outperforms other techniques developed in this study that separately utilize either only CSNA data or only ECG data. Therefore, it significantly increases the detection performance of CADs by taking advantage of the diversity in different data types and leveraging their strengths. Furthermore, its performance is comparatively better than that of most previously proposed machine and deep learning methods that exclusively used ECG data to diagnose or classify CADs. Additionally, it has a very low implementation time, which is highly desirable for real-time detection of CADs. CONCLUSIONS The proposed automated AIHAD technique may serve as an efficient decision-support system to increase physicians' success in fast, early, and accurate diagnosis of CADs. It may be highly beneficial and valuable, particularly for asymptomatic patients, for whom the diagnostic information provided by ECG alone is not sufficient to reliably diagnose the disease. Hence, it may significantly improve patient outcomes by enabling timely treatments and considerably reducing the mortality of cardiovascular diseases (CVDs).
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Affiliation(s)
- Merve Begum Terzi
- Faculty of Engineering, Electrical and Electronics Engineering Department, Bilkent University, Ankara, Türkiye
| | - Orhan Arikan
- Faculty of Engineering, Electrical and Electronics Engineering Department, Bilkent University, Ankara, Türkiye
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Xu M, Cao L, Lu D, Hu Z, Yue Y. Application of Swarm Intelligence Optimization Algorithms in Image Processing: A Comprehensive Review of Analysis, Synthesis, and Optimization. Biomimetics (Basel) 2023; 8:235. [PMID: 37366829 DOI: 10.3390/biomimetics8020235] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Revised: 05/27/2023] [Accepted: 06/01/2023] [Indexed: 06/28/2023] Open
Abstract
Image processing technology has always been a hot and difficult topic in the field of artificial intelligence. With the rise and development of machine learning and deep learning methods, swarm intelligence algorithms have become a hot research direction, and combining image processing technology with swarm intelligence algorithms has become a new and effective improvement method. Swarm intelligence algorithm refers to an intelligent computing method formed by simulating the evolutionary laws, behavior characteristics, and thinking patterns of insects, birds, natural phenomena, and other biological populations. It has efficient and parallel global optimization capabilities and strong optimization performance. In this paper, the ant colony algorithm, particle swarm optimization algorithm, sparrow search algorithm, bat algorithm, thimble colony algorithm, and other swarm intelligent optimization algorithms are deeply studied. The model, features, improvement strategies, and application fields of the algorithm in image processing, such as image segmentation, image matching, image classification, image feature extraction, and image edge detection, are comprehensively reviewed. The theoretical research, improvement strategies, and application research of image processing are comprehensively analyzed and compared. Combined with the current literature, the improvement methods of the above algorithms and the comprehensive improvement and application of image processing technology are analyzed and summarized. The representative algorithms of the swarm intelligence algorithm combined with image segmentation technology are extracted for list analysis and summary. Then, the unified framework, common characteristics, different differences of the swarm intelligence algorithm are summarized, existing problems are raised, and finally, the future trend is projected.
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Affiliation(s)
- Minghai Xu
- School of Intelligent Manufacturing and Electronic Engineering, Wenzhou University of Technology, Wenzhou 325035, China
| | - Li Cao
- School of Intelligent Manufacturing and Electronic Engineering, Wenzhou University of Technology, Wenzhou 325035, China
| | - Dongwan Lu
- Intelligent Information Systems Institute, Wenzhou University, Wenzhou 325035, China
| | - Zhongyi Hu
- Intelligent Information Systems Institute, Wenzhou University, Wenzhou 325035, China
| | - Yinggao Yue
- School of Intelligent Manufacturing and Electronic Engineering, Wenzhou University of Technology, Wenzhou 325035, China
- Intelligent Information Systems Institute, Wenzhou University, Wenzhou 325035, China
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Automatic diagnosis of cardiovascular diseases using wavelet feature extraction and convolutional capsule network. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2022.104497] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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Multilevel hybrid accurate handcrafted model for myocardial infarction classification using ECG signals. INT J MACH LEARN CYB 2022; 14:1651-1668. [PMID: 36467277 PMCID: PMC9702788 DOI: 10.1007/s13042-022-01718-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2022] [Accepted: 11/03/2022] [Indexed: 11/29/2022]
Abstract
Myocardial infarction (MI) is detected using electrocardiography (ECG) signals. Machine learning (ML) models have been used for automated MI detection on ECG signals. Deep learning models generally yield high classification performance but are computationally intensive. We have developed a novel multilevel hybrid feature extraction-based classification model with low time complexity for MI classification. The study dataset comprising 12-lead ECGs belonging to one healthy and 10 MI classes were downloaded from a public ECG signal databank. The model architecture comprised multilevel hybrid feature extraction, iterative feature selection, classification, and iterative majority voting (IMV). In the hybrid handcrafted feature (HHF) generation phase, both textural and statistical feature extraction functions were used to extract features from ECG beats but only at a low level. A new pooling-based multilevel decomposition model was presented to enable them to create features at a high level. This model used average and maximum pooling to create decomposed signals. Using these pooling functions, an unbalanced tree was obtained. Therefore, this model was named multilevel unbalanced pooling tree transformation (MUPTT). On the feature extraction side, two extractors (functions) were used to generate both statistical and textural features. To generate statistical features, 20 commonly used moments were used. A new, improved symmetric binary pattern function was proposed to generate textural features. Both feature extractors were applied to the original MI signal and the decomposed signals generated by the MUPTT. The most valuable features from among the extracted feature vectors were selected using iterative neighborhood component analysis (INCA). In the classification phase, a one-dimensional nearest neighbor classifier with ten-fold cross-validation was used to obtain lead-wise results. The computed lead-wise results derived from all 12 leads of the same beat were input to the IMV algorithm to generate ten voted results. The most representative was chosen using a greedy technique to calculate the overall classification performance of the model. The HHF-MUPTT-based ECG beat classification model attained excellent performance, with the best lead-wise accuracy of 99.85% observed in Lead III and 99.94% classification accuracy using the IMV algorithm. The results confirmed the high MI classification ability of the presented computationally lightweight HHF-MUPTT-based model.
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Feng K, Fan Z. A novel bidirectional LSTM network based on scale factor for atrial fibrillation signals classification. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2022.103663] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
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Xiong P, Lee SMY, Chan G. Deep Learning for Detecting and Locating Myocardial Infarction by Electrocardiogram: A Literature Review. Front Cardiovasc Med 2022; 9:860032. [PMID: 35402563 PMCID: PMC8990170 DOI: 10.3389/fcvm.2022.860032] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2022] [Accepted: 02/18/2022] [Indexed: 12/24/2022] Open
Abstract
Myocardial infarction is a common cardiovascular disorder caused by prolonged ischemia, and early diagnosis of myocardial infarction (MI) is critical for lifesaving. ECG is a simple and non-invasive approach in MI detection, localization, diagnosis, and prognosis. Population-based screening with ECG can detect MI early and help prevent it but this method is too labor-intensive and time-consuming to carry out in practice unless artificial intelligence (AI) would be able to reduce the workload. Recent advances in using deep learning (DL) for ECG screening might rekindle this hope. This review aims to take stock of 59 major DL studies applied to the ECG for MI detection and localization published in recent 5 years, covering convolutional neural network (CNN), long short-term memory (LSTM), convolutional recurrent neural network (CRNN), gated recurrent unit (GRU), residual neural network (ResNet), and autoencoder (AE). In this period, CNN obtained the best popularity in both MI detection and localization, and the highest performance has been obtained from CNN and ResNet model. The reported maximum accuracies of the six different methods are all beyond 97%. Considering the usage of different datasets and ECG leads, the network that trained on 12 leads ECG data of PTB database has obtained higher accuracy than that on smaller number leads data of other datasets. In addition, some limitations and challenges of the DL techniques are also discussed in this review.
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Affiliation(s)
- Ping Xiong
- State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Taipa, Macau SAR, China
| | - Simon Ming-Yuen Lee
- State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Taipa, Macau SAR, China
| | - Ging Chan
- State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Taipa, Macau SAR, China
- Department of Public Health and Medicinal Administration, Faculty of Health Sciences, University of Macau, Taipa, Macau SAR, China
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Kusuma S, Jothi K. ECG signals-based automated diagnosis of congestive heart failure using Deep CNN and LSTM architecture. Biocybern Biomed Eng 2022. [DOI: 10.1016/j.bbe.2022.02.003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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Martin H, Morar U, Izquierdo W, Cabrerizo M, Cabrera A, Adjouadi M. Real-time frequency-independent single-Lead and single-beat myocardial infarction detection. Artif Intell Med 2021; 121:102179. [PMID: 34763801 DOI: 10.1016/j.artmed.2021.102179] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Revised: 07/29/2021] [Accepted: 09/21/2021] [Indexed: 11/26/2022]
Abstract
This study proposes a novel real-time frequency-independent myocardial infarction detector for Lead II electrocardiograms. The underlying Deep-LSTM network is trained using the PTB-XL database, the largest to date publicly available electrocardiography dataset, and is tested over the same and the older PTB database. By testing the model over distinct datasets, collected under different conditions and from different patients, a more realistic measure of the performance can be gauged from the deployed system. The detector is trained over 3589 myocardial infarction (MI) patients and 7115 healthy controls (HC) while it is evaluated on 1076 MIs and 1840 HCs. The proposed algorithm, achieved an accuracy of 77.12%, recall/sensitivity of 75.85%, and a specificity of 83.02% over the entire PTB database; 85.07%, 81.54%, 87.31% over the PTB-XL validation set (fold 9), and 84.17%, 78.37%, 87.55% over the PTB-XL test set (fold 10). The model also achieves stable performance metrics over the frequency range of 202 Hz to 2.8 kHz. The processing time is dependent on the sampling frequency, ranging from 130 ms at 202 Hz to 1.8 s at 2.8 kHz. Such outcome is within the time required for real-time processing (less than 300 ms for fast heartbeats), between 202 Hz and 500 Hz making the algorithm practically real-time. Therefore, the proposed MI detector could be readily deployed onto existing wearable and/or portable devices and test instruments; potentially having significant societal and clinical impact in the lives of patients at risk for myocardial infarction.
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Affiliation(s)
- Harold Martin
- CATE, Department of Electrical and Computer Engineering, Florida International University, Miami, FL, USA.
| | - Ulyana Morar
- CATE, Department of Electrical and Computer Engineering, Florida International University, Miami, FL, USA
| | - Walter Izquierdo
- CATE, Department of Electrical and Computer Engineering, Florida International University, Miami, FL, USA
| | - Mercedes Cabrerizo
- CATE, Department of Electrical and Computer Engineering, Florida International University, Miami, FL, USA
| | | | - Malek Adjouadi
- CATE, Department of Electrical and Computer Engineering, Florida International University, Miami, FL, USA
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Hybrid CNN-LSTM deep learning model and ensemble technique for automatic detection of myocardial infarction using big ECG data. APPL INTELL 2021. [DOI: 10.1007/s10489-021-02696-6] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Yang W, Si Y, Zhang G, Wang D, Sun M, Fan W, Liu X, Li L. A novel method for automated congestive heart failure and coronary artery disease recognition using THC-Net. Inf Sci (N Y) 2021. [DOI: 10.1016/j.ins.2021.04.036] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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Near real-time single-beat myocardial infarction detection from single-lead electrocardiogram using Long Short-Term Memory Neural Network. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2021.102683] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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Jahmunah V, Ng EYK, San TR, Acharya UR. Automated detection of coronary artery disease, myocardial infarction and congestive heart failure using GaborCNN model with ECG signals. Comput Biol Med 2021; 134:104457. [PMID: 33991857 DOI: 10.1016/j.compbiomed.2021.104457] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2021] [Revised: 04/22/2021] [Accepted: 04/26/2021] [Indexed: 01/02/2023]
Abstract
Cardiovascular diseases (CVDs) are main causes of death globally with coronary artery disease (CAD) being the most important. Timely diagnosis and treatment of CAD is crucial to reduce the incidence of CAD complications like myocardial infarction (MI) and ischemia-induced congestive heart failure (CHF). Electrocardiogram (ECG) signals are most commonly employed as the diagnostic screening tool to detect CAD. In this study, an automated system (AS) was developed for the automated categorization of electrocardiogram signals into normal, CAD, myocardial infarction (MI) and congestive heart failure (CHF) classes using convolutional neural network (CNN) and unique GaborCNN models. Weight balancing was used to balance the imbalanced dataset. High classification accuracies of more than 98.5% were obtained by the CNN and GaborCNN models respectively, for the 4-class classification of normal, coronary artery disease, myocardial infarction and congestive heart failure classes. GaborCNN is a more preferred model due to its good performance and reduced computational complexity as compared to the CNN model. To the best of our knowledge, this is the first study to propose GaborCNN model for automated categorizing of normal, coronary artery disease, myocardial infarction and congestive heart failure classes using ECG signals. Our proposed system is equipped to be validated with bigger database and has the potential to aid the clinicians to screen for CVDs using ECG signals.
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Affiliation(s)
- V Jahmunah
- Department of Mechanical and Aerospace Engineering, Nanyang Technological University, Singapore
| | - E Y K Ng
- Department of Mechanical and Aerospace Engineering, Nanyang Technological University, Singapore.
| | | | - U Rajendra Acharya
- School of Engineering, Ngee Ann Polytechnic, Singapore; Biomedical Engineering, School of Social Science and Technology, Singapore University of Social Sciences, Singapore; International Research Organization for Advanced Science and Technology (IROAST), Kumamoto University, Kumamoto, Japan; Department Bioinformatics and Medical Engineering, Asia University, Taiwan; School of Management and Enterprise, University of Southern Queensland, Australia.
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Dai H, Hwang HG, Tseng VS. Convolutional neural network based automatic screening tool for cardiovascular diseases using different intervals of ECG signals. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2021; 203:106035. [PMID: 33770545 DOI: 10.1016/j.cmpb.2021.106035] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2020] [Accepted: 02/28/2021] [Indexed: 06/12/2023]
Abstract
BACKGROUND AND OBJECTIVE Automatic screening tools can be applied to detect cardiovascular diseases (CVDs), which are the leading cause of death worldwide. As an effective and non-invasive method, electrocardiogram (ECG) based approaches are widely used to identify CVDs. Hence, this paper proposes a deep convolutional neural network (CNN) to classify five CVDs using standard 12-lead ECG signals. METHODS The Physiobank (PTB) ECG database is used in this study. Firstly, ECG signals are segmented into different intervals (one-second, two-seconds and three-seconds), without any wave detection, and three datasets are obtained. Secondly, as an alternative to any complex preprocessing, durations of raw ECG signals have been considered as input with simple min-max normalization. Lastly, a ten-fold cross-validation method is employed for one-second ECG signals and also tested on other two datasets (two-seconds and three-seconds). RESULTS Comparing to the competing approaches, the proposed CNN acquires the highest performance, having an accuracy, sensitivity, and specificity of 99.59%, 99.04%, and 99.87%, respectively, with one-second ECG signals. The overall accuracy, sensitivity, and specificity obtained are 99.80%, 99.48%, and 99.93%, respectively, using two-seconds of signals with pre-trained proposed models. The accuracy, sensitivity, and specificity of segmented ECG tested by three-seconds signals are 99.84%, 99.52%, and 99.95%, respectively. CONCLUSION The results of this study indicate that the proposed system accomplishes high performance and keeps the characterizations in brief with flexibility at the same time, which means that it has the potential for implementation in a practical, real-time medical environment.
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Affiliation(s)
- Hao Dai
- Institute of Information Management, National Chiao Tung University, Hsinchu, Taiwan.
| | - Hsin-Ginn Hwang
- Institute of Information Management, National Chiao Tung University, Hsinchu, Taiwan
| | - Vincent S Tseng
- Department of Computer Science, National Chiao Tung University, Hsinchu, Taiwan
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Intellectual heartbeats classification model for diagnosis of heart disease from ECG signal using hybrid convolutional neural network with GOA. SN APPLIED SCIENCES 2021. [DOI: 10.1007/s42452-021-04185-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
Abstract
AbstractAutomatic heart disease detection from human heartbeats is a challenging and intellectual assignment in signal processing because periodically monitoring of the heart beat arrhythmia for patient is an essential task to reduce the death rate due to cardiovascular disease (CVD). In this paper, the focus of research is to design hybrid Convolutional Neural Network (CNN) architecture by making use of Grasshopper Optimization Algorithm (GOA) to classify different types of heart diseases from the ECG signal or human heartbeats. Convolutional Neural Network (CNN) as an artificial intelligence approach is widely used in computer vision-based medical data analysis. However, the traditional CNN cannot be used for classification of heart diseases from the ECG signal because lots of noise or irrelevant data is mixed with signal. So this study utilizes the pre-processing and selection of feature for proper heart diseases classification, where Discrete Wavelet Transform (DWT) is used for the noise reduction as well as segmentation of ECG signal and Grasshopper Optimization Algorithm (GOA) is used for selection of R-peaks features from the extracted feature sets in terms of R-peaks and R-R intervals that help to attain better classification accuracy. For training as well as testing of projected Heartbeats Classification Model (HCM), the Standard MIT-BIH arrhythmia database is utilized with hybrid Convolutional Neural Network (CNN) architecture. The assortment of proper R-peaks and R-R intervals is a major factor and because of the deficiency of apposite pre-processing phases like noise removal, signal decomposition, smoothing and filtering, the uniqueness of extracted feature is less. The experimental outcomes show that the planned HCM is effective for detecting irregular human heartbeats via R-peaks and R-R intervals. When the proposed Heartbeats Classification Model (HCM) was verified on the database, model achieved higher efficiency than other state-of-the-art techniques for 16 heartbeat disease categories and the average classification accuracy is 99.58% with fast and robust responses where the correctly classified heartbeats are 86,005 and misclassified beats is only 108 with 0.42% error rate.
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Gao Y, Wang H, Liu Z. An end-to-end atrial fibrillation detection by a novel residual-based temporal attention convolutional neural network with exponential nonlinearity loss. Knowl Based Syst 2021. [DOI: 10.1016/j.knosys.2020.106589] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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Velusamy D, Ramasamy K. Ensemble of heterogeneous classifiers for diagnosis and prediction of coronary artery disease with reduced feature subset. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2021; 198:105770. [PMID: 33027698 DOI: 10.1016/j.cmpb.2020.105770] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2020] [Accepted: 09/19/2020] [Indexed: 06/11/2023]
Abstract
BACKGROUND AND OBJECTIVE Coronary artery disease (CAD) is considered one of the most prominent health issues causing high mortality in the world population. Hence, earlier diagnosis and prediction of CAD is essential for the proper medication of patients. The objective of this study is to develop a machine learning algorithm that will help in accurate diagnosis of CAD. METHODS In this paper, we have proposed a novel heterogeneous ensemble method combining three base classifiers viz., K-Nearest Neighbour, Random Forest, and Support Vector Machine for effective diagnosis of CAD. The results of base classifiers are combined using ensemble voting technique based on average-voting (AVEn), majority-voting (MVEn), and weighted-average voting (WAVEn) for prediction of CAD. The random forest-based Boruta wrapper feature selection algorithm and feature importance of SVM are used for relevant feature selection based on attribute importance and rank. RESULTS The proposed ensemble algorithm is developed using 5 features selected based on the feature importance and the performance of the algorithm is evaluated using the Z-Alizadeh Sani dataset. Further, the dataset is balanced using Synthetic Minority Over-sampling Technique and its performance is evaluated. The result analysis shows that the WAVEn algorithm achieves better classification accuracy, sensitivity, specificity and precision of 98.97%, 100%, 96.3% and 98.3% respectively for the original dataset. The WAVEn algorithm applied on the balanced dataset achieves 100% accuracy, sensitivity, specificity and precision in diagnosing CAD. To the best of author's knowledge, the accuracy achieved by WAVEn is the highest accuracy when compared with the state-of-the-art algorithms in the literature for both original and balanced dataset. CONCLUSIONS The statistical results prove the robustness of the WAVEn algorithm in reliably discriminating the CAD patients from healthy ones with high precision, and therefore it can be used for developing a decision support system for diagnosing CAD at an early stage.
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Affiliation(s)
- Durgadevi Velusamy
- Department of Computer Science and Engineering, M.Kumarasamy College of Engineering, Karur, Tamilnadu, 639 113, India.
| | - Karthikeyan Ramasamy
- Department of Electrical and Electronics Engineering, M.Kumarasamy College of Engineering, Karur, Tamilnadu, 639 113, India.
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Thawkar S, Ingolikar R. Classification of masses in digital mammograms using Biogeography-based optimization technique. JOURNAL OF KING SAUD UNIVERSITY - COMPUTER AND INFORMATION SCIENCES 2020. [DOI: 10.1016/j.jksuci.2018.01.004] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Xie L, Li Z, Zhou Y, He Y, Zhu J. Computational Diagnostic Techniques for Electrocardiogram Signal Analysis. SENSORS (BASEL, SWITZERLAND) 2020; 20:E6318. [PMID: 33167558 PMCID: PMC7664289 DOI: 10.3390/s20216318] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/08/2020] [Revised: 10/27/2020] [Accepted: 11/04/2020] [Indexed: 12/25/2022]
Abstract
Cardiovascular diseases (CVDs), including asymptomatic myocardial ischemia, angina, myocardial infarction, and ischemic heart failure, are the leading cause of death globally. Early detection and treatment of CVDs significantly contribute to the prevention or delay of cardiovascular death. Electrocardiogram (ECG) records the electrical impulses generated by heart muscles, which reflect regular or irregular beating activity. Computer-aided techniques provide fast and accurate tools to identify CVDs using a patient's ECG signal, which have achieved great success in recent years. Latest computational diagnostic techniques based on ECG signals for estimating CVDs conditions are summarized here. The procedure of ECG signals analysis is discussed in several subsections, including data preprocessing, feature engineering, classification, and application. In particular, the End-to-End models integrate feature extraction and classification into learning algorithms, which not only greatly simplifies the process of data analysis, but also shows excellent accuracy and robustness. Portable devices enable users to monitor their cardiovascular status at any time, bringing new scenarios as well as challenges to the application of ECG algorithms. Computational diagnostic techniques for ECG signal analysis show great potential for helping health care professionals, and their application in daily life benefits both patients and sub-healthy people.
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Affiliation(s)
- Liping Xie
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang 110169, China; (Z.L.); (Y.Z.); (Y.H.); (J.Z.)
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Meo M, Denis A, Sacher F, Duchâteau J, Cheniti G, Puyo S, Bear L, Jaïs P, Hocini M, Haïssaguerre M, Bernus O, Dubois R. Insights Into the Spatiotemporal Patterns of Complexity of Ventricular Fibrillation by Multilead Analysis of Body Surface Potential Maps. Front Physiol 2020; 11:554838. [PMID: 33071814 PMCID: PMC7538856 DOI: 10.3389/fphys.2020.554838] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2020] [Accepted: 08/12/2020] [Indexed: 12/12/2022] Open
Abstract
BACKGROUND Ventricular fibrillation (VF) is the main cause of sudden cardiac death, but its mechanisms are still unclear. We propose a noninvasive approach to describe the progression of VF complexity from body surface potential maps (BSPMs). METHODS We mapped 252 VF episodes (16 ± 10 s) with a 252-electrode vest in 110 patients (89 male, 47 ± 18 years): 50 terminated spontaneously, otherwise by electrical cardioversion (DCC). Changes in complexity were assessed between the onset ("VF start") and the end ("VF end") of VF by the nondipolar component index (N D I B S P M ), measuring the fraction of energy nonpreserved by an equivalent 3D dipole from BSPMs. Higher NDI reflected lower VF organization. We also examined other standard body surface markers of VF dynamics, including fibrillatory wave amplitude (A BSPM ), surface cycle length (BsCL BSPM ) and Shannon entropy (S h E n B S P M ). Differences between patients with and without structural heart diseases (SHD, 32 vs. NSHD, 78) were also tested at those stages. Electrocardiographic features were validated with simultaneous endocardium cycle length (CL) in a subset of 30 patients. RESULTS All BSPM markers measure an increase in electrical complexity during VF (p < 0.0001), and more significantly in NSHD patients. Complexity is significantly higher at the end of sustained VF episodes requiring DCC. Intraepisode intracardiac CL shortening (VF start 197 ± 24 vs. VF end 169 ± 20 ms; p < 0.0001) correlates with an increase in NDI, and decline in surface CL, f-wave amplitude, and entropy (p < 0.0001). In SHD patients VF is initially more complex than in NSHD patients (N D I B S P M , p = 0.0007; S h E n B S P M , p < 0.0001), with moderately slower (BsCL BSPM , p = 0.06), low-amplitude f-waves (A BSPM , p < 0.0001). In this population, lower NDI (p = 0.004) and slower surface CL (p = 0.008) at early stage of VF predict self-termination. In the NSHD group, a more abrupt increase in VF complexity is quantified by all BSPM parameters during sustained VF (p < 0.0001), whereas arrhythmia evolution is stable during self-terminating episodes, hinting at additional mechanisms driving VF dynamics. CONCLUSION Multilead BSPM analysis underlines distinct degrees of VF complexity based on substrate characteristics.
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Affiliation(s)
- Marianna Meo
- Institute of Electrophysiology and Heart Modeling (IHU Liryc), Foundation Bordeaux University, Bordeaux, France
- Centre de Recherche Cardio-Thoracique de Bordeaux, U1045, University of Bordeaux, Bordeaux, France
- Centre de Recherche Cardio-Thoracique de Bordeaux, U1045, Institut National de la Santé et de la Recherche Médicale, Bordeaux, France
| | - Arnaud Denis
- Institute of Electrophysiology and Heart Modeling (IHU Liryc), Foundation Bordeaux University, Bordeaux, France
- Electrophysiology and Ablation Unit, Bordeaux University Hospital, Bordeaux, France
| | - Frédéric Sacher
- Institute of Electrophysiology and Heart Modeling (IHU Liryc), Foundation Bordeaux University, Bordeaux, France
- Electrophysiology and Ablation Unit, Bordeaux University Hospital, Bordeaux, France
| | - Josselin Duchâteau
- Institute of Electrophysiology and Heart Modeling (IHU Liryc), Foundation Bordeaux University, Bordeaux, France
- Centre de Recherche Cardio-Thoracique de Bordeaux, U1045, University of Bordeaux, Bordeaux, France
- Centre de Recherche Cardio-Thoracique de Bordeaux, U1045, Institut National de la Santé et de la Recherche Médicale, Bordeaux, France
- Electrophysiology and Ablation Unit, Bordeaux University Hospital, Bordeaux, France
| | - Ghassen Cheniti
- Institute of Electrophysiology and Heart Modeling (IHU Liryc), Foundation Bordeaux University, Bordeaux, France
- Electrophysiology and Ablation Unit, Bordeaux University Hospital, Bordeaux, France
| | - Stéphane Puyo
- Institute of Electrophysiology and Heart Modeling (IHU Liryc), Foundation Bordeaux University, Bordeaux, France
- Electrophysiology and Ablation Unit, Bordeaux University Hospital, Bordeaux, France
| | - Laura Bear
- Institute of Electrophysiology and Heart Modeling (IHU Liryc), Foundation Bordeaux University, Bordeaux, France
- Centre de Recherche Cardio-Thoracique de Bordeaux, U1045, University of Bordeaux, Bordeaux, France
- Centre de Recherche Cardio-Thoracique de Bordeaux, U1045, Institut National de la Santé et de la Recherche Médicale, Bordeaux, France
| | - Pierre Jaïs
- Institute of Electrophysiology and Heart Modeling (IHU Liryc), Foundation Bordeaux University, Bordeaux, France
- Centre de Recherche Cardio-Thoracique de Bordeaux, U1045, University of Bordeaux, Bordeaux, France
- Centre de Recherche Cardio-Thoracique de Bordeaux, U1045, Institut National de la Santé et de la Recherche Médicale, Bordeaux, France
- Electrophysiology and Ablation Unit, Bordeaux University Hospital, Bordeaux, France
| | - Mélèze Hocini
- Institute of Electrophysiology and Heart Modeling (IHU Liryc), Foundation Bordeaux University, Bordeaux, France
- Centre de Recherche Cardio-Thoracique de Bordeaux, U1045, University of Bordeaux, Bordeaux, France
- Centre de Recherche Cardio-Thoracique de Bordeaux, U1045, Institut National de la Santé et de la Recherche Médicale, Bordeaux, France
- Electrophysiology and Ablation Unit, Bordeaux University Hospital, Bordeaux, France
| | - Michel Haïssaguerre
- Institute of Electrophysiology and Heart Modeling (IHU Liryc), Foundation Bordeaux University, Bordeaux, France
- Centre de Recherche Cardio-Thoracique de Bordeaux, U1045, University of Bordeaux, Bordeaux, France
- Centre de Recherche Cardio-Thoracique de Bordeaux, U1045, Institut National de la Santé et de la Recherche Médicale, Bordeaux, France
- Electrophysiology and Ablation Unit, Bordeaux University Hospital, Bordeaux, France
| | - Olivier Bernus
- Institute of Electrophysiology and Heart Modeling (IHU Liryc), Foundation Bordeaux University, Bordeaux, France
- Centre de Recherche Cardio-Thoracique de Bordeaux, U1045, University of Bordeaux, Bordeaux, France
- Centre de Recherche Cardio-Thoracique de Bordeaux, U1045, Institut National de la Santé et de la Recherche Médicale, Bordeaux, France
| | - Rémi Dubois
- Institute of Electrophysiology and Heart Modeling (IHU Liryc), Foundation Bordeaux University, Bordeaux, France
- Centre de Recherche Cardio-Thoracique de Bordeaux, U1045, University of Bordeaux, Bordeaux, France
- Centre de Recherche Cardio-Thoracique de Bordeaux, U1045, Institut National de la Santé et de la Recherche Médicale, Bordeaux, France
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A Robust Multilevel DWT Densely Network for Cardiovascular Disease Classification. SENSORS 2020; 20:s20174777. [PMID: 32847070 PMCID: PMC7506881 DOI: 10.3390/s20174777] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/05/2020] [Revised: 08/20/2020] [Accepted: 08/21/2020] [Indexed: 11/26/2022]
Abstract
Cardiovascular disease is the leading cause of death worldwide. Immediate and accurate diagnoses of cardiovascular disease are essential for saving lives. Although most of the previously reported works have tried to classify heartbeats accurately based on the intra-patient paradigm, they suffer from category imbalance issues since abnormal heartbeats appear much less regularly than normal heartbeats. Furthermore, most existing methods rely on data preprocessing steps, such as noise removal and R-peak location. In this study, we present a robust classification system using a multilevel discrete wavelet transform densely network (MDD-Net) for the accurate detection of normal, coronary artery disease (CAD), myocardial infarction (MI) and congestive heart failure (CHF). First, the raw ECG signals from different databases are divided into same-size segments using an original adaptive sample frequency segmentation algorithm (ASFS). Then, the fusion features are extracted from the MDD-Net to achieve great classification performance. We evaluated the proposed method considering the intra-patient and inter-patient paradigms. The average accuracy, positive predictive value, sensitivity and specificity were 99.74%, 99.09%, 98.67% and 99.83%, respectively, under the intra-patient paradigm, and 96.92%, 92.17%, 89.18% and 97.77%, respectively, under the inter-patient paradigm. Moreover, the experimental results demonstrate that our model is robust to noise and class imbalance issues.
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Pei Z, Shi M, Guo J, Shen B. Heart Rate Variability Based Prediction of Personalized Drug Therapeutic Response: The Present Status and the Perspectives. Curr Top Med Chem 2020; 20:1640-1650. [PMID: 32493191 DOI: 10.2174/1568026620666200603105002] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2020] [Revised: 02/28/2020] [Accepted: 03/02/2020] [Indexed: 02/08/2023]
Abstract
Heart rate variability (HRV) signals are reported to be associated with the personalized drug
response in many diseases such as major depressive disorder, epilepsy, chronic pain, hypertension, etc.
But the relationships between HRV signals and the personalized drug response in different diseases and
patients are complex and remain unclear. With the fast development of modern smart sensor technologies
and the popularization of big data paradigm, more and more data on the HRV and drug response
will be available, it then provides great opportunities to build models for predicting the association of
the HRV with personalized drug response precisely. We here review the present status of the HRV data
resources and models for predicting and evaluating of personalized drug responses in different diseases.
The future perspectives on the integration of knowledge and personalized data at different levels such as,
genomics, physiological signals, etc. for the application of HRV signals to the precision prediction of
drug therapy and their response will be provided.
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Affiliation(s)
- Zejun Pei
- Nanjing Medical University Affiliated Wuxi Second Hospital, No. 68,Zhongshan road, Wuxi, Jiangsu, China
| | - Manhong Shi
- Centre for Systems Biology, Soochow University, Suzhou 215006, China
| | - Junping Guo
- The Affiliated Yixing Hospital of Jiangsu University, No. 75, Tongzhenguan Road, Yixing, Jiangsu, China
| | - Bairong Shen
- Institutes for Systems Genetics, West China Hospital, Sichuan University, Chengdu, China
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Yang W, Si Y, Wang D, Zhang G, Liu X, Li L. Automated intra-patient and inter-patient coronary artery disease and congestive heart failure detection using EFAP-Net. Knowl Based Syst 2020. [DOI: 10.1016/j.knosys.2020.106083] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Ghiasi MM, Zendehboudi S, Mohsenipour AA. Decision tree-based diagnosis of coronary artery disease: CART model. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2020; 192:105400. [PMID: 32179311 DOI: 10.1016/j.cmpb.2020.105400] [Citation(s) in RCA: 70] [Impact Index Per Article: 17.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2019] [Revised: 02/12/2020] [Accepted: 02/16/2020] [Indexed: 05/03/2023]
Abstract
BACKGROUND AND OBJECTIVE As the most common cardiovascular defect, coronary artery disease (CAD), also called ischemic heart disease, is one of the substantial causes of death globally. Several diagnosis approaches such as baseline electrocardiography, echocardiography, magnetic resonance imaging, and coronary angiography are suggested for screening the suspected patients that may suffer from CAD. However, applying such methods may have health side effects and/or expensive costs. METHODS As an alternative to the available diagnosis tools/methods, this research involves a decision tree learning algorithm called classification and regression tree (CART) for a simple and reliable diagnosis of CAD. Several CART models are developed based on the recently CAD dataset published in the literature. RESULTS Utilizing all the features of the dataset (55 independent parameters), it was found that only 40 independent parameters influence the CAD diagnosis and consequently development of the predictive model. Based on the feature importance obtained from the first CART model, three new CART models are then developed using 18, 10, and 5 selected features. Except for the five-feature CART model, the outcomes of developed CART models demonstrate the maximum achievable accuracy, sensitivity, and specificity for CAD diagnosis (100%), while comparing the predictions with the reported targets. The error analysis reveals that the literature models including sequential minimal optimization (SMO), bagging SMO, Naïve Bayes (NB), artificial neural network (ANN), C4.5, J48, Bagging, and ANN in conjunction with the genetic algorithm (GA) do not outperform the CART methodology in classifying patients as normal or CAD. CONCLUSIONS Hence, the robustness of the tree-based algorithm in accurate and fast predictions is confirmed, implying the proposed classification technique can be successfully utilized to develop a coherent decision-making system for the CAD diagnosis.
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Affiliation(s)
- Mohammad M Ghiasi
- Faculty of Engineering and Applied Science, Memorial University, St. John's, NL A1B 3X5, Canada.
| | - Sohrab Zendehboudi
- Faculty of Engineering and Applied Science, Memorial University, St. John's, NL A1B 3X5, Canada
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25
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Wang J. Automated detection of atrial fibrillation and atrial flutter in ECG signals based on convolutional and improved Elman neural network. Knowl Based Syst 2020. [DOI: 10.1016/j.knosys.2019.105446] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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26
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1D-CADCapsNet: One dimensional deep capsule networks for coronary artery disease detection using ECG signals. Phys Med 2020; 70:39-48. [DOI: 10.1016/j.ejmp.2020.01.007] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/16/2019] [Revised: 11/27/2019] [Accepted: 01/07/2020] [Indexed: 12/14/2022] Open
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Lih OS, Jahmunah V, San TR, Ciaccio EJ, Yamakawa T, Tanabe M, Kobayashi M, Faust O, Acharya UR. Comprehensive electrocardiographic diagnosis based on deep learning. Artif Intell Med 2020; 103:101789. [PMID: 32143796 DOI: 10.1016/j.artmed.2019.101789] [Citation(s) in RCA: 82] [Impact Index Per Article: 20.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2019] [Revised: 11/06/2019] [Accepted: 12/31/2019] [Indexed: 11/15/2022]
Abstract
Cardiovascular disease (CVD) is the leading cause of death worldwide, and coronary artery disease (CAD) is a major contributor. Early-stage CAD can progress if undiagnosed and left untreated, leading to myocardial infarction (MI) that may induce irreversible heart muscle damage, resulting in heart chamber remodeling and eventual congestive heart failure (CHF). Electrocardiography (ECG) signals can be useful to detect established MI, and may also be helpful for early diagnosis of CAD. For the latter especially, the ECG perturbations can be subtle and potentially misclassified during manual interpretation and/or when analyzed by traditional algorithms found in ECG instrumentation. For automated diagnostic systems (ADS), deep learning techniques are favored over conventional machine learning techniques, due to the automatic feature extraction and selection processes involved. This paper highlights various deep learning algorithms exploited for the classification of ECG signals into CAD, MI, and CHF conditions. The Convolutional Neural Network (CNN), followed by combined CNN and Long Short-Term Memory (LSTM) models, appear to be the most useful architectures for classification. A 16-layer LSTM model was developed in our study and validated using 10-fold cross-validation. A classification accuracy of 98.5% was achieved. Our proposed model has the potential to be a useful diagnostic tool in hospitals for the classification of abnormal ECG signals.
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Affiliation(s)
- Oh Shu Lih
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - V Jahmunah
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | | | | | - Toshitaka Yamakawa
- Department of Computer Science and Electrical Engineering, Kumamoto University, Japan
| | - Masayuki Tanabe
- Department of Computer Science and Electrical Engineering, Kumamoto University, Japan; International Research Organization for Advanced Science and Technology (IROAST) Kumamoto University, Kumamoto, Japan
| | - Makiko Kobayashi
- Department of Computer Science and Electrical Engineering, Kumamoto University, Japan
| | - Oliver Faust
- Department of Engineering and Mathematics, Sheffield Hallam University, United Kingdom
| | - U Rajendra Acharya
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore; Department of Bioinformatics and Medical Engineering, Asia University, Taichung, Taiwan; International Research Organization for Advanced Science and Technology (IROAST) Kumamoto University, Kumamoto, Japan.
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29
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Alizadehsani R, Roshanzamir M, Abdar M, Beykikhoshk A, Khosravi A, Panahiazar M, Koohestani A, Khozeimeh F, Nahavandi S, Sarrafzadegan N. A database for using machine learning and data mining techniques for coronary artery disease diagnosis. Sci Data 2019; 6:227. [PMID: 31645559 PMCID: PMC6811630 DOI: 10.1038/s41597-019-0206-3] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2019] [Accepted: 08/16/2019] [Indexed: 12/28/2022] Open
Abstract
We present the coronary artery disease (CAD) database, a comprehensive resource, comprising 126 papers and 68 datasets relevant to CAD diagnosis, extracted from the scientific literature from 1992 and 2018. These data were collected to help advance research on CAD-related machine learning and data mining algorithms, and hopefully to ultimately advance clinical diagnosis and early treatment. To aid users, we have also built a web application that presents the database through various reports.
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Affiliation(s)
- R Alizadehsani
- Institute for Intelligent Systems Research and Innovation, Deakin University, Geelong, VIC 3216, Australia
| | - M Roshanzamir
- Department of Electrical and Computer Engineering, Isfahan University of Technology, Isfahan, 84156-83111, Iran
| | - M Abdar
- Département d'informatique, Université du Québec à Montréal, Montréal, Québec, Canada
| | - A Beykikhoshk
- Applied Artificial Intelligence Institute, Deakin University, Geelong, Australia
| | - A Khosravi
- Institute for Intelligent Systems Research and Innovation, Deakin University, Geelong, VIC 3216, Australia
| | - M Panahiazar
- University of California San Francisco, San Francisco, CA, USA.
| | - A Koohestani
- Institute for Intelligent Systems Research and Innovation, Deakin University, Geelong, VIC 3216, Australia
| | - F Khozeimeh
- Mashhad University of Medical Science, Mashhad, Iran
| | - S Nahavandi
- Institute for Intelligent Systems Research and Innovation, Deakin University, Geelong, VIC 3216, Australia
| | - N Sarrafzadegan
- Isfahan Cardiovascular Research Center, Cardiovascular Research Institute, Isfahan University of Medical Sciences, Isfahan, Iran
- School of Population and Public Health, Faculty of Medicine, University of British Columbia, Vancouver, British Columbia, Canada
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Alizadehsani R, Abdar M, Roshanzamir M, Khosravi A, Kebria PM, Khozeimeh F, Nahavandi S, Sarrafzadegan N, Acharya UR. Machine learning-based coronary artery disease diagnosis: A comprehensive review. Comput Biol Med 2019; 111:103346. [PMID: 31288140 DOI: 10.1016/j.compbiomed.2019.103346] [Citation(s) in RCA: 68] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2019] [Revised: 06/26/2019] [Accepted: 06/26/2019] [Indexed: 02/02/2023]
Abstract
Coronary artery disease (CAD) is the most common cardiovascular disease (CVD) and often leads to a heart attack. It annually causes millions of deaths and billions of dollars in financial losses worldwide. Angiography, which is invasive and risky, is the standard procedure for diagnosing CAD. Alternatively, machine learning (ML) techniques have been widely used in the literature as fast, affordable, and noninvasive approaches for CAD detection. The results that have been published on ML-based CAD diagnosis differ substantially in terms of the analyzed datasets, sample sizes, features, location of data collection, performance metrics, and applied ML techniques. Due to these fundamental differences, achievements in the literature cannot be generalized. This paper conducts a comprehensive and multifaceted review of all relevant studies that were published between 1992 and 2019 for ML-based CAD diagnosis. The impacts of various factors, such as dataset characteristics (geographical location, sample size, features, and the stenosis of each coronary artery) and applied ML techniques (feature selection, performance metrics, and method) are investigated in detail. Finally, the important challenges and shortcomings of ML-based CAD diagnosis are discussed.
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Affiliation(s)
- Roohallah Alizadehsani
- Institute for Intelligent Systems Research and Innovation (IISRI), Deakin University, Australia.
| | - Moloud Abdar
- Département d'informatique, Université du Québec à Montréal, Montréal, Québec, Canada
| | - Mohamad Roshanzamir
- Department of Electrical and Computer Engineering, Isfahan University of Technology, Isfahan, Iran
| | - Abbas Khosravi
- Institute for Intelligent Systems Research and Innovation (IISRI), Deakin University, Australia
| | - Parham M Kebria
- Institute for Intelligent Systems Research and Innovation (IISRI), Deakin University, Australia
| | - Fahime Khozeimeh
- Faculty of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran
| | - Saeid Nahavandi
- Institute for Intelligent Systems Research and Innovation (IISRI), Deakin University, Australia
| | - Nizal Sarrafzadegan
- Faculty of Medicine, SPPH, University of British Columbia, Vancouver, BC, Canada; Isfahan Cardiovascular Research Center, Cardiovascular Research Institute, Isfahan University of Medical Sciences, Khorram Ave, Isfahan, Iran
| | - U Rajendra Acharya
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore; Department of Biomedical Engineering, School of Science and Technology, Singapore University of Social Sciences, Singapore; Department of Biomedical Engineering, Faculty of Engineering, University of Malaya, Malaysia
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Li F, Chen K, Ling J, Zhan Y, Manogaran G. Automatic diagnosis of cardiac arrhythmia in electrocardiograms via multigranulation computing. Appl Soft Comput 2019. [DOI: 10.1016/j.asoc.2019.04.007] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Jahmunah V, Oh SL, Wei JKE, Ciaccio EJ, Chua K, San TR, Acharya UR. Computer-aided diagnosis of congestive heart failure using ECG signals - A review. Phys Med 2019; 62:95-104. [PMID: 31153403 DOI: 10.1016/j.ejmp.2019.05.004] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/06/2019] [Revised: 05/02/2019] [Accepted: 05/04/2019] [Indexed: 12/16/2022] Open
Abstract
The heart muscle pumps blood to vital organs, which is indispensable for human life. Congestive heart failure (CHF) is characterized by the inability of the heart to pump blood adequately throughout the body without an increase in intracardiac pressure. The symptoms include lung and peripheral congestion, leading to breathing difficulty and swollen limbs, dizziness from reduced delivery of blood to the brain, as well as arrhythmia. Coronary artery disease, myocardial infarction, and medical co-morbidities such as kidney disease, diabetes, and high blood pressure all take a toll on the heart and can impair myocardial function. CHF prevalence is growing worldwide. It afflicts millions of people globally, and is a leading cause of death. Hence, proper diagnosis, monitoring and management are imperative. The importance of an objective CHF diagnostic tool cannot be overemphasized. Standard diagnostic tests for CHF include chest X-ray, magnetic resonance imaging (MRI), nuclear imaging, echocardiography, and invasive angiography. However, these methods are costly, time-consuming, and they can be operator-dependent. Electrocardiography (ECG) is inexpensive and widely accessible, but ECG changes are typically not specific for CHF diagnosis. A properly designed computer-aided detection (CAD) system for CHF, based on the ECG, would potentially reduce subjectivity and provide quantitative assessment for informed decision-making. Herein, we review existing CAD for automatic CHF diagnosis, and highlight the development of an ECG-based CAD diagnostic system that employs deep learning algorithms to automatically detect CHF.
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Affiliation(s)
- V Jahmunah
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore.
| | - Shu Lih Oh
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - Joel Koh En Wei
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | | | - Kuang Chua
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | | | - U Rajendra Acharya
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore; Department of Biomedical Engineering, School of Science and Technology, Singapore University of Social Sciences, Singapore; School of Medicine, Faculty of Health and Medical Sciences, Taylor's University, 47500 Subang Jaya, Malaysia.
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MORIDANI MOHAMMADKARIMI, POULADIAN MAJID. A NOVEL METHOD TO ISCHEMIC HEART DISEASE DETECTION BASED ON NON-INVASIVE ECG IMAGING. J MECH MED BIOL 2019. [DOI: 10.1142/s0219519419500027] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Electrocardiogram (ECG) signals containing very important information about the cardiac are one of the most common tools for physicians in the diagnosis of various types of cardiac diseases. Low accuracy in positioning, limitation of time accuracy, the similarity of signals between some diseases and normal signals and probability of missing some aspect of data are the defect aspects of this method. Importance of cardiac signals and defects of current methods in diagnosis show the need of substituting a new method to show the activity of cardiac. One of the most dangerous defections is ischemia, which corrects and on time diagnose could avoid the latter effect of it. Each of common methods for diagnosis of this illness has their own advantages and disadvantages. In this paper, we consider describing a non-invasive method for ischemic episode detection based on mapping of ECG signals. With this method, we can present the signals with virtual colors and facilitate the diagnosis of ischemic disease. So, a new method of 12-lead cardiac presentation is described that in fact present the 12-lead signals in two images. The result of this paper will present the indicators of sensitivity, specificity and accuracy in the context of disease diagnosis. This paper proposed a novel ECG imaging algorithm for classifying the normal and ischemic signals and 95.35% specificity, 96.79% sensitivity and 95.76% accuracy were achieved which are very much promising compared to the other methods and doctor’s accuracy.
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Affiliation(s)
- MOHAMMAD KARIMI MORIDANI
- Department of Biomedical Engineering, Tehran Medical Sciences Branch, Islamic Azad University, Tehran, Iran
| | - MAJID POULADIAN
- Department of Biomedical Engineering, Science and Research Branch, Islamic Azad University, Tehran, Iran
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Baloglu UB, Talo M, Yildirim O, Tan RS, Acharya UR. Classification of myocardial infarction with multi-lead ECG signals and deep CNN. Pattern Recognit Lett 2019. [DOI: 10.1016/j.patrec.2019.02.016] [Citation(s) in RCA: 102] [Impact Index Per Article: 20.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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36
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YILDIRIM ÖZAL. ECG BEAT DETECTION AND CLASSIFICATION SYSTEM USING WAVELET TRANSFORM AND ONLINE SEQUENTIAL ELM. J MECH MED BIOL 2019. [DOI: 10.1142/s0219519419400086] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Electrocardiogram (ECG) signals consist of data containing measurements of electrical activity in the heartbeats. These signals include relevant information used to detect abnormalities such as arrhythmia. In this study, a recognition system is proposed for detection and classification of heartbeats in ECG signals. Heartbeats in the ECG data were detected by using the wavelet transform (WT) method and these beats are segmented with determined periods. For obtaining distinctive features from the beats, multi-resolution WT is applied to these segmented signals, and wavelet coefficients are obtained from different frequency levels. Feature vectors are generated on these coefficients by using various statistical methods. The proposed recognition system is trained on feature vectors by using the Online Sequential Extreme Learning Machine (OSELM) classifier during the learning phase to automatically recognize the signals. Five different beat types were obtained from the MIT-BIH arrhythmia dataset. The multi-class dataset that includes five classes and the binary-class dataset that includes two classes were created among these beat types. Performance tests of the proposed wavelet-based-OSELM (W-OSELM) method were realized with these two datasets. The proposed recognition system provided 97.29% correct beat detection rate from raw ECG signals. The classification accuracy is 99.44% for the binary-class dataset and 98.51% for the multi-class dataset. Furthermore, the proposed classifier has shown very fast recognition performance on ECG signals.
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Affiliation(s)
- ÖZAL YILDIRIM
- Computer Engineering Department, Munzur University, Tunceli, Turkey
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MOHSIN AHMAD, FAUST OLIVER. AUTOMATED CHARACTERIZATION OF CARDIOVASCULAR DISEASES USING WAVELET TRANSFORM FEATURES EXTRACTED FROM ECG SIGNALS. J MECH MED BIOL 2019. [DOI: 10.1142/s0219519419400098] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Cardiovascular disease has been the leading cause of death worldwide. Electrocardiogram (ECG)-based heart disease diagnosis is simple, fast, cost effective and non-invasive. However, interpreting ECG waveforms can be taxing for a clinician who has to deal with hundreds of patients during a day. We propose computing machinery to reduce the workload of clinicians and to streamline the clinical work processes. Replacing human labor with machine work can lead to cost savings. Furthermore, it is possible to improve the diagnosis quality by reducing inter- and intra-observer variability. To support that claim, we created a computer program that recognizes normal, Dilated Cardiomyopathy (DCM), Hypertrophic Cardiomyopathy (HCM) or Myocardial Infarction (MI) ECG signals. The computer program combined Discrete Wavelet Transform (DWT) based feature extraction and K-Nearest Neighbor (K-NN) classification for discriminating the signal classes. The system was verified with tenfold cross validation based on labeled data from the PTB diagnostic ECG database. During the validation, we adjusted the number of neighbors [Formula: see text] for the machine learning algorithm. For [Formula: see text], training set has an accuracy and cross validation of 98.33% and 95%, respectively. However, when [Formula: see text], it showed constant for training set but dropped drastically to 80% for cross-validation. Hence, training set [Formula: see text] prevails. Furthermore, a confusion matrix proved that normal data was identified with 96.7% accuracy, 99.6% sensitivity and 99.4% specificity. This means an error of 3.3% will occur. For every 30 normal signals, the classifier will mislabel only 1 of the them as HCM. With these results, we are confident that the proposed system can improve the speed and accuracy with which normal and diseased subjects are identified. Diseased subjects can be treated earlier which improves their probability of survival.
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Affiliation(s)
- AHMAD MOHSIN
- Singapore University of Social Sciences, School of Science and Technology, Singapore
| | - OLIVER FAUST
- Department of Engineering and Mathematics, Sheffield Hallam University, Sheffield, United Kingdom
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MURALIDHAR BAIRY G, HAGIWARA YUKI. EMPIRICAL MODE DECOMPOSITION-BASED PROCESSING FOR AUTOMATED DETECTION OF EPILEPSY. J MECH MED BIOL 2019. [DOI: 10.1142/s0219519419400037] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Epilepsy is a chronic illness of the brain characterized by recurring seizure attacks. Electroencephalogram (EEG) can record the electrical activity of the brain and is extensively used to analyze and diagnose epileptic seizures. However, the EEG signals are highly non-linear and chaotic and are difficult to analyze due to their small magnitude. Hence, empirical mode decomposition (EMD), a non-linear technique, has been widely adopted to capture the subtle changes present in the EEG signals. Hence, it is an added advantage to develop an automated computer-aided diagnostic (CAD) system to detect the different brain activities from the EEG signals using machine learning approaches. In this paper, we focus on the previous works which have used the EMD technique in the automated detection of normal or epileptic EEG signals.
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Affiliation(s)
- G. MURALIDHAR BAIRY
- Faculty Department of Biomedical Engineering, Manipal Institute of Technology, Manipal 576104, India
| | - YUKI HAGIWARA
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, 599489 Singapore
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He H, Tan Y, Xing J. Unsupervised classification of 12-lead ECG signals using wavelet tensor decomposition and two-dimensional Gaussian spectral clustering. Knowl Based Syst 2019. [DOI: 10.1016/j.knosys.2018.09.001] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Acharya UR, Raghavendra U, Koh JEW, Meiburger KM, Ciaccio EJ, Hagiwara Y, Molinari F, Leong WL, Vijayananthan A, Yaakup NA, Fabell MKBM, Yeong CH. Automated detection and classification of liver fibrosis stages using contourlet transform and nonlinear features. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2018; 166:91-98. [PMID: 30415722 DOI: 10.1016/j.cmpb.2018.10.006] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2018] [Revised: 08/24/2018] [Accepted: 10/01/2018] [Indexed: 06/09/2023]
Abstract
BACKGROUND AND OBJECTIVE Liver fibrosis is a type of chronic liver injury that is characterized by an excessive deposition of extracellular matrix protein. Early detection of liver fibrosis may prevent further growth toward liver cirrhosis and hepatocellular carcinoma. In the past, the only method to assess liver fibrosis was through biopsy, but this examination is invasive, expensive, prone to sampling errors, and may cause complications such as bleeding. Ultrasound-based elastography is a promising tool to measure tissue elasticity in real time; however, this technology requires an upgrade of the ultrasound system and software. In this study, a novel computer-aided diagnosis tool is proposed to automatically detect and classify the various stages of liver fibrosis based upon conventional B-mode ultrasound images. METHODS The proposed method uses a 2D contourlet transform and a set of texture features that are efficiently extracted from the transformed image. Then, the combination of a kernel discriminant analysis (KDA)-based feature reduction technique and analysis of variance (ANOVA)-based feature ranking technique was used, and the images were then classified into various stages of liver fibrosis. RESULTS Our 2D contourlet transform and texture feature analysis approach achieved a 91.46% accuracy using only four features input to the probabilistic neural network classifier, to classify the five stages of liver fibrosis. It also achieved a 92.16% sensitivity and 88.92% specificity for the same model. The evaluation was done on a database of 762 ultrasound images belonging to five different stages of liver fibrosis. CONCLUSIONS The findings suggest that the proposed method can be useful to automatically detect and classify liver fibrosis, which would greatly assist clinicians in making an accurate diagnosis.
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Affiliation(s)
- U Rajendra Acharya
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Clementi 599489, Singapore; Department of Biomedical Engineering, School of Science and Technology, Singapore University of Social Sciences, Clementi 599491, Singapore; School of Medicine, Faculty of Health and Medical Sciences, Taylor's University, 47500 Subang Jaya, Malaysia
| | - U Raghavendra
- Department of Instrumentation and Control Engineering, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal 576104, India
| | - Joel E W Koh
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Clementi 599489, Singapore
| | - Kristen M Meiburger
- Department of Electronics and Telecommunications, Politecnico di Torino, Corso Duca degli Abruzzi, 24, 10129 Torino, Italy.
| | - Edward J Ciaccio
- Department of Medicine, Columbia University, New York, NY, 10032, USA
| | - Yuki Hagiwara
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Clementi 599489, Singapore
| | - Filippo Molinari
- Department of Electronics and Telecommunications, Politecnico di Torino, Corso Duca degli Abruzzi, 24, 10129 Torino, Italy
| | - Wai Ling Leong
- Department of Biomedical Imaging, Faculty of Medicine, University of Malaya, 50603 Kuala Lumpur, Malaysia
| | - Anushya Vijayananthan
- Department of Biomedical Imaging, Faculty of Medicine, University of Malaya, 50603 Kuala Lumpur, Malaysia
| | - Nur Adura Yaakup
- Department of Biomedical Imaging, Faculty of Medicine, University of Malaya, 50603 Kuala Lumpur, Malaysia
| | - Mohd Kamil Bin Mohd Fabell
- Department of Biomedical Imaging, Faculty of Medicine, University of Malaya, 50603 Kuala Lumpur, Malaysia
| | - Chai Hong Yeong
- Department of Biomedical Imaging, Faculty of Medicine, University of Malaya, 50603 Kuala Lumpur, Malaysia; School of Medicine, Faculty of Health and Medical Sciences, Taylor's University, 47500 Subang Jaya, Malaysia
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Sharma M, Tan RS, Acharya UR. A novel automated diagnostic system for classification of myocardial infarction ECG signals using an optimal biorthogonal filter bank. Comput Biol Med 2018; 102:341-356. [PMID: 30049414 DOI: 10.1016/j.compbiomed.2018.07.005] [Citation(s) in RCA: 66] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2018] [Revised: 07/06/2018] [Accepted: 07/07/2018] [Indexed: 11/16/2022]
Abstract
Myocardial infarction (MI), also referred to as heart attack, occurs when there is an interruption of blood flow to parts of the heart, due to the acute rupture of atherosclerotic plaque, which leads to damage of heart muscle. The heart muscle damage produces changes in the recorded surface electrocardiogram (ECG). The identification of MI by visual inspection of the ECG requires expert interpretation, and is difficult as the ECG signal changes associated with MI can be short in duration and low in magnitude. Hence, errors in diagnosis can lead to delay the initiation of appropriate medical treatment. To lessen the burden on doctors, an automated ECG based system can be installed in hospitals to help identify MI changes on ECG. In the proposed study, we develop a single-channel single lead ECG based MI diagnostic system validated using noisy and clean datasets. The raw ECG signals are taken from the Physikalisch-Technische Bundesanstalt database. We design a novel two-band optimal biorthogonal filter bank (FB) for analysis of the ECG signals. We present a method to design a novel class of two-band optimal biorthogonal FB in which not only the product filter but the analysis lowpass filter is also a halfband filter. The filter design problem has been composed as a constrained convex optimization problem in which the objective function is a convex combination of multiple quadratic functions and the regularity and perfect reconstruction conditions are imposed in the form linear equalities. ECG signals are decomposed into six subbands (SBs) using the newly designed wavelet FB. Following to this, discriminating features namely, fuzzy entropy (FE), signal-fractal-dimensions (SFD), and renyi entropy (RE) are computed from all the six SBs. The features are fed to the k-nearest neighbor (KNN). The proposed system yields an accuracy of 99.62% for the noisy dataset and an accuracy of 99.74% for the clean dataset, using 10-fold cross validation (CV) technique. Our MI identification system is robust and highly accurate. It can thus be installed in clinics for detecting MI.
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Affiliation(s)
- Manish Sharma
- Department of Electrical Engineering, Institute of Infrastructure Technology Research and Management, Ahmedabad, India.
| | - Ru San Tan
- National Heart Centre Singapore, Singapore.
| | - U Rajendra Acharya
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore, 599489, Singapore; Department of Biomedical Engineering, School of Science and Technology, University of Social Sciences (SUSS), Singapore; School of Medicine, Faculty of Health and Medical Sciences, Taylor's University, 47500, Subang Jaya, Malaysia.
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Classification of forensic autopsy reports through conceptual graph-based document representation model. J Biomed Inform 2018; 82:88-105. [PMID: 29738820 DOI: 10.1016/j.jbi.2018.04.013] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2017] [Revised: 02/27/2018] [Accepted: 04/24/2018] [Indexed: 12/19/2022]
Abstract
Text categorization has been used extensively in recent years to classify plain-text clinical reports. This study employs text categorization techniques for the classification of open narrative forensic autopsy reports. One of the key steps in text classification is document representation. In document representation, a clinical report is transformed into a format that is suitable for classification. The traditional document representation technique for text categorization is the bag-of-words (BoW) technique. In this study, the traditional BoW technique is ineffective in classifying forensic autopsy reports because it merely extracts frequent but discriminative features from clinical reports. Moreover, this technique fails to capture word inversion, as well as word-level synonymy and polysemy, when classifying autopsy reports. Hence, the BoW technique suffers from low accuracy and low robustness unless it is improved with contextual and application-specific information. To overcome the aforementioned limitations of the BoW technique, this research aims to develop an effective conceptual graph-based document representation (CGDR) technique to classify 1500 forensic autopsy reports from four (4) manners of death (MoD) and sixteen (16) causes of death (CoD). Term-based and Systematized Nomenclature of Medicine-Clinical Terms (SNOMED CT) based conceptual features were extracted and represented through graphs. These features were then used to train a two-level text classifier. The first level classifier was responsible for predicting MoD. In addition, the second level classifier was responsible for predicting CoD using the proposed conceptual graph-based document representation technique. To demonstrate the significance of the proposed technique, its results were compared with those of six (6) state-of-the-art document representation techniques. Lastly, this study compared the effects of one-level classification and two-level classification on the experimental results. The experimental results indicated that the CGDR technique achieved 12% to 15% improvement in accuracy compared with fully automated document representation baseline techniques. Moreover, two-level classification obtained better results compared with one-level classification. The promising results of the proposed conceptual graph-based document representation technique suggest that pathologists can adopt the proposed system as their basis for second opinion, thereby supporting them in effectively determining CoD.
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Deep convolutional neural network for the automated diagnosis of congestive heart failure using ECG signals. APPL INTELL 2018. [DOI: 10.1007/s10489-018-1179-1] [Citation(s) in RCA: 124] [Impact Index Per Article: 20.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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44
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Tan JH, Hagiwara Y, Pang W, Lim I, Oh SL, Adam M, Tan RS, Chen M, Acharya UR. Application of stacked convolutional and long short-term memory network for accurate identification of CAD ECG signals. Comput Biol Med 2018; 94:19-26. [DOI: 10.1016/j.compbiomed.2017.12.023] [Citation(s) in RCA: 158] [Impact Index Per Article: 26.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2017] [Revised: 12/27/2017] [Accepted: 12/28/2017] [Indexed: 12/28/2022]
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45
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Raghavendra U, Fujita H, Gudigar A, Shetty R, Nayak K, Pai U, Samanth J, Acharya U. Automated technique for coronary artery disease characterization and classification using DD-DTDWT in ultrasound images. Biomed Signal Process Control 2018. [DOI: 10.1016/j.bspc.2017.09.030] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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46
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Acharya UR, Hagiwara Y, Koh JEW, Oh SL, Tan JH, Adam M, Tan RS. Entropies for automated detection of coronary artery disease using ECG signals: A review. Biocybern Biomed Eng 2018. [DOI: 10.1016/j.bbe.2018.03.001] [Citation(s) in RCA: 56] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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47
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Use of features from RR-time series and EEG signals for automated classification of sleep stages in deep neural network framework. Biocybern Biomed Eng 2018. [DOI: 10.1016/j.bbe.2018.05.005] [Citation(s) in RCA: 88] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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48
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Qin CJ, Guan Q, Wang XP. APPLICATION OF ENSEMBLE ALGORITHM INTEGRATING MULTIPLE CRITERIA FEATURE SELECTION IN CORONARY HEART DISEASE DETECTION. BIOMEDICAL ENGINEERING-APPLICATIONS BASIS COMMUNICATIONS 2017. [DOI: 10.4015/s1016237217500430] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Conventional coronary heart disease (CHD) detection methods are expensive, rely much on doctors’ subjective experience, and some of them have side effects. In order to obtain rapid, high-precision, low-cost, non-invasive detection results, several methods in machine learning were attempted for CHD detection in this paper. The paper adopted multiple evaluation criteria to measure features, combined with heuristic search strategy and seven common classification algorithms to verify the validity and the importance of feature selection (FS) in the Z-Alizadeh Sani CHD dataset. On this basis, a novelty algorithm integrating multiple FS methods into the ensemble algorithm (ensemble algorithm based on multiple feature selection, EA-MFS) was further proposed. The algorithm adopted Bagging approach to increase data diversity, used the aforementioned MFS methods for functional perturbation, employed major voting method to carry out the decision results, and performed selective integration in terms of the difference of base classifiers in the ensemble process. Compared with the single FS method, the EA-MFS algorithm could comprehensively describe the relationship of features, enhance the classification effect, and displayed better robustness. That meant the EA-MFS algorithm could reduce the dependence on dataset and strengthen the stability of the algorithm, all of which were of great significance for the clinical application of machine learning algorithm in coronary heart disease detection.
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Affiliation(s)
- Cai-Jie Qin
- Institute of Information Engineering, SanMing University, SanMing 365004, P. R. China
| | - Qiang Guan
- Institute of Information Engineering, SanMing University, SanMing 365004, P. R. China
| | - Xin-Pei Wang
- School of Control Science and Engineering, ShanDong University, JiNan 250000, P. R. China
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KANG YIDA, ZHUO DEMING, FOO RUIENANNE, LIM CHOOMIN, FAUST OLIVER, HAGIWARA YUKI. ALGORITHM FOR THE DETECTION OF CONGESTIVE HEART FAILURE INDEX. J MECH MED BIOL 2017. [DOI: 10.1142/s0219519417400437] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
This study documents our efforts to provide computer support for the diagnosis of congestive heart failure (CHF). That computer support takes the form of an index value. A high index value indicates a low probability of CHF, and an index value below a threshold of 25.6 suggests a high probability of CHF. To create that index, we have designed a sophisticated algorithm chain which takes electrocardiogram signals as input. The signals are pre-processed before they are sent to a range of nonlinear feature extraction algorithms. The top 10 feature extraction methods were used to create the CHF index. By using objective feature extraction algorithms, we avoid the problem of inter- and intra-observer variability. We observed that the nonlinear feature extraction methods reflect the nature of the human heart very well. That observation is based on the fact that the nonlinear features achieved low [Formula: see text]-values and high feature ranking criterion scores.
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Affiliation(s)
- YI DA KANG
- Department of Electronic and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - DEMING ZHUO
- Department of Electronic and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - RUI EN ANNE FOO
- Department of Electronic and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - CHOO MIN LIM
- Department of Electronic and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - OLIVER FAUST
- Department of Engineering and Mathematics, Sheffield Hallam University, UK
| | - YUKI HAGIWARA
- Department of Electronic and Computer Engineering, Ngee Ann Polytechnic, Singapore
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Automated Diagnosis of Myocardial Infarction ECG Signals Using Sample Entropy in Flexible Analytic Wavelet Transform Framework. ENTROPY 2017. [DOI: 10.3390/e19090488] [Citation(s) in RCA: 54] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
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