Enhanced ex situ bioremediation of crude oil contaminated beach sand by supplementation with nutrients and rhamnolipids

Bacillus altitudinis AD13-4 Enhances Saline-Alkali Stress Tolerance of Alfalfa and Affects Composition of Rhizosphere Soil Microbial Community

Saline and alkaline stresses limit plant growth and reduce crop yield. Soil salinization and alkalization seriously threaten the sustainable development of agriculture and the virtuous cycle of ecology. Biofertilizers made from plant growth-promoting rhizobacteria (PGPR) not only enhance plant growth and stress tolerance, but also are environmentally friendly and cost-effective. There have been many studies on the mechanisms underlying PGPRs enhancing plant salt resistance. However, there is limited knowledge about the interaction between PGPR and plants under alkaline-sodic stress. To clarify the mechanisms underlying PGPR's improvement of plants' tolerance to alkaline-sodic stress, we screened PGPR from the rhizosphere microorganisms of local plants growing in alkaline-sodic land and selected an efficient strain, Bacillus altitudinis AD13-4, as the research object. Our results indicate that the strain AD13-4 can produce various growth-promoting substances to regulate plant endogenous hormone levels, cell division and differentiation, photosynthesis, antioxidant capacity, etc. Transcriptome analysis revealed that the strain AD13-4 significantly affected metabolism and secondary metabolism, signal transduction, photosynthesis, redox processes, and plant-pathogen interactions. Under alkaline-sodic conditions, inoculation of the strain AD13-4 significantly improved plant biomass and the contents of metabolites (e.g., soluble proteins and sugars) as well as secondary metabolites (e.g., phenols, flavonoids, and terpenoids). The 16S rRNA gene sequencing results indicated that the strain AD13-4 significantly affected the abundance and composition of the rhizospheric microbiota and improved soil activities and physiochemical properties. Our study provides theoretical support for the optimization of saline-alkali-tolerant PGPR and valuable information for elucidating the mechanism of plant alkaline-sodic tolerance.

Halobacteria-Based Biofertilizers: A Promising Alternative for Enhancing Soil Fertility and Crop Productivity under Biotic and Abiotic Stresses-A Review

Abiotic and biotic stresses such as salt stress and fungal infections significantly affect plant growth and productivity, leading to reduced crop yield. Traditional methods of managing stress factors, such as developing resistant varieties, chemical fertilizers, and pesticides, have shown limited success in the presence of combined biotic and abiotic stress factors. Halotolerant bacteria found in saline environments have potential as plant promoters under stressful conditions. These microorganisms produce bioactive molecules and plant growth regulators, making them a promising agent for enhancing soil fertility, improving plant resistance to adversities, and increasing crop production. This review highlights the capability of plant-growth-promoting halobacteria (PGPH) to stimulate plant growth in non-saline conditions, strengthen plant tolerance and resistance to biotic and abiotic stressors, and sustain soil fertility. The major attempted points are: (i) the various abiotic and biotic challenges that limit agriculture sustainability and food safety, (ii) the mechanisms employed by PGPH to promote plant tolerance and resistance to both biotic and abiotic stressors, (iii) the important role played by PGPH in the recovery and remediation of agricultural affected soils, and (iv) the concerns and limitations of using PGHB as an innovative approach to boost crop production and food security.

Surfactant-enhanced mobilization of persistent organic pollutants: Potential for soil and sediment remediation and unintended consequences

This review aims to provide an overview of the sources and reactions of persistent organic pollutants (POPs) and surfactants in soil and sediments, the surfactant-enhanced solubilisation of POPs, and the unintended consequences of surfactant-induced remediation of soil and sediments contaminated with POPs. POPs include chemical compounds that are recalcitrant to natural degradation through photolytic, chemical, and biological processes in the environment. POPs are potentially toxic compounds mainly used in pesticides, solvents, pharmaceuticals, or industrial applications and pose a significant and persistent risk to the ecosystem and human health. Surfactants can serve as detergents, wetting and foaming compounds, emulsifiers, or dispersants, and have been used extensively to promote the solubilization of POPs and their subsequent removal from environmental matrices, including solid wastes, soil, and sediments. However, improper use of surfactants for remediation of POPs may lead to unintended consequences that include toxicity of surfactants to soil microorganisms and plants, and leaching of POPs, thereby resulting in groundwater contamination.

Organic wastes bioremediation and its changing prospects

Increasing inappropriate anthropogenic activities and industrialization have resulted in severe environmental pollution worldwide. Their effective treatment is vital for general health concerns. Depending on the characteristics of pollutants, the severity of pollution may differ. For sustainable treatment of polluted environments, bioremediation is accepted as the most efficient, economical, and environmentally friendly method hence largely preferred. However, every bioremediation technique has its own unique advantages and limitations due to its defined applications criteria. In bioremediation, microorganisms play a decisive role in detoxification by degrading, mineralizing and accumulating various forms of harmful and biodegradable pollutants from the surroundings and transforming them into less lethal forms. Bioremediation is performed ex-situ or in-situ, based on location of polluted site as well as characteristics, type and strength of the pollutants. Furthermore, the most popular methodologies for bioremediation include bioaugmentation, biostimulation, bioattenuation among others which depend on the prevailing environmental factors into the microbial system. Implementing them appropriately and effectively under ex-situ or in-situ method is extremely important not only for obtaining efficient treatment but also for the best economic, environmental, and social impacts. Therefore, this review aims to analyze various bioremediation methods for organic pollutants remediation from soil/sediments and wastewater, their strength, limitation, and insights for the selection of appropriate bioremediation techniques based on nature, types, degree, and location of the pollution. The novelty aspect of the article is to give updates on several key supporting technologies which have recently emerged and exhibited great potential to enhance the present bioremediation efficiency such as nanobubble, engineered biochar, mixotrophic microalgae, nanotechnology etc. Moreover, amalgamation of these technologies with existing bioremediation facilities are significantly changing the scenario and scope of environmental remediation towards sustainable bioremediation.

Effect of rhamnolipids on the fungal elimination of toluene vapor in a biotrickling filter under stressed operational conditions

The application of rhamnolipids in a fungal-cultured biotrickling filter (BTF) has a significant impact on toluene removal. Two BTFs were used; BTF-A, a control bed, and BTF-B fed with rhamnolipids. The effect of empty bed residence times (EBRTs) on toluene bioavailability was investigated. Removal of toluene was carried out at EBRTs of 30 and 60 s and inlet loading rates (LRs) of 23-184 g m^-3 h^-1. At 30 s EBRT, when inlet LR was increased from 23 to 184 g m^-3 h^-1, the removal efficiency (RE) decreased from 93% to 50% for the control bed, and from 94% to 87% for BTF-B. Increasing the EBRT simultaneously with inlet LRs, confirms that BTF-A was diffusion-limited by registering a RE of 62% for toluene inlet LR of 184 g m^-3 h^-1, whereas BTF-B, achieved RE > 96%, confirming a significant improvement in toluene biodegradability. Overall, the best performance was observed at 60 s EBRT and inlet LR of 184 g m^-3 h^-1, providing a maximum elimination capacity (EC) of 176.8 g m^-3 h^-1 under steady-state conditions. While a maximum EC of 114 g m^-3 h^-1 was observed under the same conditions in the absence of rhamnolipids (BTF-A). Measurements of critical micelle concentration showed that 150 mg L^-1 of rhamnolipids demonstrated the lowest aqueous surface tension and maximum formation of micelles, while 175 mg L^-1 was the optimum dose for fungal growth. Production rate of carbon dioxide, and dissolved oxygen contents highlighted the positive influence of rhamnolipids on adhesive forces, improved toluene mineralization, and promotion of microbial motility over mobility.

In-situ, Ex-situ, and nano-remediation strategies to treat polluted soil, water, and air - A review

Nanotechnology, as an emerging science, has taken over all fields of life including industries, health and medicine, environmental issues, agriculture, biotechnology etc. The use of nanostructure molecules has revolutionized all sectors. Environmental pollution is a great concern now a days, in all industrial and developing as well as some developed countries. A number of remedies are in practice to overcome this problem. The application of nanotechnology in the bioremediation of environmental pollutants is a step towards revolution. The use of various types of nanoparticles (TiO₂ based NPs, dendrimers, Fe based NPs, Silica and carbon nanomaterials, Graphene based NPs, nanotubes, polymers, micelles, nanomembranes etc.) is in practice to diminish environmental hazards. For this many In-situ (bioventing, bioslurping, biosparging, phytoremediation, permeable reactive barrier etc.) and Ex-situ (biopile, windrows, bioreactors, land farming etc.) methodologies are employed. Improved properties like nanoscale size, less time utilization, high adaptability for In-situ and Ex-situ use, undeniable degree of surface-region to-volume proportion for possible reactivity, and protection from ecological elements make nanoparticles ideal for natural applications. There are distinctive nanomaterials and nanotools accessible to treat the pollutants. Each of these methods and nanotools depends on the properties of foreign substances and the pollution site. The current designed review highlights the techniques used for bioremediation of environmental pollutants as well as use of various nanoparticles along with proposed In-situ and Ex-situ bioremediation techniques.

Improving the bioremediation technology of contaminated wastewater using biosurfactants produced by novel bacillus isolates

Biosurfactants have many advantages outside chemical one, led for application it through different sectors. So, the present study aimed for improving the bioremediation technology of contaminated wastewater using biosurfactants produced by novel bacillus isolates. In this regard, Bacillus thuringiensis and Bacillus toyonensis strains were obtained as most producing isolates of highly active biosurfactants. The optimized conditions for high biosurfactants yield production were established. Also, the stability of the produced biosurfactants at various conditions, pH, temperature and salinity was studied. The biosurfactant has been reported up to 120 °C, pH 12 and 10% of NaCl. The identified biosurfactants, decanoic acid and oleamide were applied for wastewater remediation from oil residues and pathogens contamination. The biosurfactant was had high antibacterial activity compared with references antimicrobial drugs, as well as it is enhanced bioremediation technology for petroleum oil residues contaminating sites. Thus, we can say, these biosurfactants could achieve the objectives of sustainable development.

Deep remediation of oil spill based on the dispersion and photocatalytic degradation of biosurfactant-modified TiO2

The employment of dispersant was an effective method to treat marine oil spill pollution. However, conventional dispersants only showed a single oil dispersion. Here, by modifying TiO₂ nanoparticles with biosurfactant-Rhamnolipids (Rha), a highly efficient particulate dispersant with photocatalytic activity was developed. Rha-TiO₂ showed both excellent oil spill dispersion and facilitated photodegradation for oil simultaneously. The oil droplets dispersed by Rha-TiO₂ in seawater exhibited long time stability, which indicated the synergistic emulsification interactions between TiO₂ and Rha in artificial sea water (ASW). The dispersion mechanism of Rha-TiO₂ was analyzed, we found the TiO₂ nanoparticles alone weren't effectively emulsified oil in high salinity ASW, but the addition of a small amount of Rha could modify the surface wettability of TiO₂ nanoparticles to form the stable emulsion. In addition, the addition of a small amount of Rha could reduce the surface tension of the oil-water interface, which contribute to increasing the content of TiO₂ nanoparticles at the oil-water interface, form a steric rigid layer around the oil droplets to prevent droplet coalescence and facilitate the further photocatalytic degradation of oil. In short, the Rha-TiO₂ nanoparticles could effective disperse oil in ASW, meanwhile the TiO₂ also played the role of photocatalytic degradation of oil pollution. Hence, this study developed a novel photocatalytic particulate dispersant to remediate marine oil spill and delivered a new feasible solution for practical oil spill treatment in the future.

Bacteria, Fungi and Microalgae for the Bioremediation of Marine Sediments Contaminated by Petroleum Hydrocarbons in the Omics Era

Petroleum hydrocarbons (PHCs) are one of the most widespread and heterogeneous organic contaminants affecting marine ecosystems. The contamination of marine sediments or coastal areas by PHCs represents a major threat for the ecosystem and human health, calling for urgent, effective, and sustainable remediation solutions. Aside from some physical and chemical treatments that have been established over the years for marine sediment reclamation, bioremediation approaches based on the use of microorganisms are gaining increasing attention for their eco-compatibility, and lower costs. In this work, we review current knowledge concerning the bioremediation of PHCs in marine systems, presenting a synthesis of the most effective microbial taxa (i.e., bacteria, fungi, and microalgae) identified so far for hydrocarbon removal. We also discuss the challenges offered by innovative molecular approaches for the design of effective reclamation strategies based on these three microbial components of marine sediments contaminated by hydrocarbons.

Bibliometric Analysis of Hydrocarbon Bioremediation in Cold Regions and a Review on Enhanced Soil Bioremediation

Simple Summary

Anthropogenic activities in cold regions require petroleum oils to support various purposes. With the increased demand of petroleum, accidental oil spills are generated during transportation or refuelling processes. Soil is one of the major victims in petroleum pollution, hence studies have been devoted to find solutions to remove these petroleum hydrocarbons. However, the remote and low-temperature conditions in cold regions hindered the implementation of physical and chemical removal treatments. On the other hand, biological treatments in general have been proposed as an innovative approach to attenuate these hydrocarbon pollutants in soils. To understand the relevancy of biological treatments for cold regions specifically, bibliometric analysis has been applied to systematically analyse studies focused on hydrocarbon removal treatment in a biological way. To expedite the understanding of this analysis, we have summarised these biological treatments and suggested other biological applications in the context of cold conditions.

Abstract

The increased usage of petroleum oils in cold regions has led to widespread oil pollutants in soils. The harsh environmental conditions in cold environments allow the persistence of these oil pollutants in soils for more than 20 years, raising adverse threats to the ecosystem. Microbial bioremediation was proposed and employed as a cost-effective tool to remediate petroleum hydrocarbons present in soils without significantly posing harmful side effects. However, the conventional hydrocarbon bioremediation requires a longer time to achieve the clean-up standard due to various environmental factors in cold regions. Recent biotechnological improvements using biostimulation and/or bioaugmentation strategies are reported and implemented to enhance the hydrocarbon removal efficiency under cold conditions. Thus, this review focuses on the enhanced bioremediation for hydrocarbon-polluted soils in cold regions, highlighting in situ and ex situ approaches and few potential enhancements via the exploitation of molecular and microbial technology in response to the cold condition. The bibliometric analysis of the hydrocarbon bioremediation research in cold regions is also presented.

Sustainable Remediation of Contaminated Soil Using Biosurfactants

Selection of the most appropriate remediation technology must coincide with the environmental characteristics of the site. The risk to human health and the environment at the site must be reduced, and not be transferred to another site. Biosurfactants have the potential as remediation agents due to their biodegradability, low toxicity, and effectiveness. Selection of biosurfactants should be based on pollutant characteristics and properties, treatment capacity, costs, regulatory requirements, and time constraints. Moreover, understanding of the mechanisms of interaction between biosurfactants and contaminants can assist in selection of the appropriate biosurfactants for sustainable remediation. Enhanced sustainability of the remediation process by biosurfactants can be achieved through the use of renewable or waste substrates, in situ production of biosurfactants, and greener production and recovery processes for biosurfactants. Future research needs are identified.

Exploring the effects of microalgal biomass on the oil behavior in a sand-water system

This study focused on the impact of microalgal biomass on the oil behavior in a sand-water system. The microalgal biomass was characterized, and the interaction between microalgal biomass and oil was analyzed through Fourier transform infrared (FTIR) spectroscopy. The effects of different conditions including microalgal biomass dose, pH, temperature, and salinity on the oil behavior were investigated. A two-level factorial analysis was also used to further explore the interactions of these conditions. The microalgal biomass was found to be the most influential parameter for the residual crude oil on sand. Higher microalgal biomass dose resulted in less residual oil on sand. The remaining oil decreased with increasing solution pH from 4 to 7, and an increase of remaining oil was observed when the pH was further increased above 7. In addition, temperature and salinity could affect the removal of crude oil in the presence of microalgal biomass. Increasing the temperature could result in less residual oil on sand and there was higher oil removal at the high salinity. The effects of microalgal biomass on the oil behavior could also be impacted by environmental conditions. The results of this study indicate that the presence of algae in the oiled shoreline can be considered in the comprehensive evaluation of spill risk and prediction of oil fate.

Assessment of the Lowland Bog Biomass for Ex Situ Remediation of Petroleum-Contaminated Soils

Bog petroleum-contaminated soils have been remediated ex situ in conditions close to natural ones. It was found that during the first 30 days in natural conditions, the decomposition of total petroleum hydrocarbons (TPH) was 30 ± 5%. On the 60th and 90th days, the process of TPH decomposition was 45 ± 5% and 60 ± 5%, respectively. The effect of various stimulant supplements was negligible. For the entire observed period, bog soil showed a very high self-cleaning potential with pollution concentration of 5 g of petroleum per 100 g of soil sample. Such diagnostic indicators of soil condition as urease and cellulase activities turned out to be most sensitive in the bog soil. The introduction of mineral fertilizers to stimulate the TPH decomposition increased the activity of urease in comparison with the background soil. On the other hand, the nonionic surfactant acted as an inhibitor of microorganisms involved in nitrogen metabolism, even in the presence of mineral fertilizers. The introduction of mineral fertilizers to petroleum-polluted bog soil stimulated the cellulases activity, while surfactants suppressed them in the early stages. The simultaneous introduction of surfactants and fertilizers kept the cellulase activity at the background level. It is concluded that in the case of petroleum pollution of infertile soils, the introduction of the upper layers of the phytomass of lowland bogs by providing looseness and long-term supply of nutrients from the dying parts of the moss will accelerate the self-cleaning processes.

Quantitative evaluation of in-situ bioremediation of compound pollution of oil and heavy metal in sediments from the Bohai Sea, China

Owing to the semi-enclosed environment of the Bohai Sea, the ecological effects caused by an oil spill would be significant. A typical in- situ bioremediation engineering project for of oil-spilled marine sediments was performed in the Bohai Sea and a quantitative assessment of the ecological restoration was performed. The bioremediation efficiencies of n-alkane and PAHs in the sediment are 32.84 ± 21.66% and 50.42 ± 17.49% after 70 days of bioremediation, and 60.99 ± 10.14% and 68.01 ± 18.60% after 210 days, respectively. After 210 days of bioremediation, the degradation rates of two- to three ring PAHs and four-ring PAHs are 84.44 ± 23.03% and 26.62 ± 43.76%, respectively. In addition, the concentrations of the heavy metals first increased by 6.00% due to oil spill degradation and release, and then decreased by 72.60% with the degradation of oil caused by bioremediation or vertical migration. According to the continuous tracking monitoring, the composition of the microbial community in the restored area was similar to that in the control area and the clean area in Bohai Sea after 210 days of bioremediation. These results may provide some theoretical and scientific data to understand the degradation mechanism and assessing the ecological remediation efficiency for oil spills in open sea areas.

Bio-based remediation of petroleum-contaminated saline soils: Challenges, the current state-of-the-art and future prospects

Exploiting synergism between plants and microbes offers a potential means of remediating soils contaminated with petroleum hydrocarbons (PHCs). Salinity alters the physicochemical characteristics of soils and suppresses the growth of both plants and soil microbes, so the bioremediation of saline soils requires the use of plants and in microbes which can tolerate salinity. This review focuses on the management of PHC-contaminated saline soils, surveying what is currently known with respect to the potential of halophytes (plants adapted to saline environments) acting in concert with synergistic microbes to degrade PHCs. The priority is to identify optimal combinations of halophyte(s) and the bacteria present as endophytes and/or associated with the rhizosphere, and to determine what are the factors which most strongly affect their viability.

Weighted linear models for simulation and prediction of biodegradation in diesel polluted soils

The purpose of this research is to find a mathematical model based on a statistical analysis to predict the evolution of the total petroleum hydrocarbons (TPH) concentrations with time in the bioremediation process of diesel contaminated soils. The analysis is useful to compare and ascertain the efficiency of different remediation treatments and the influence of both soil characteristics and initial concentration levels of hydrocarbons on the biodegradation process. An experimental design, considering two types of soil, two concentration levels of hydrocarbons and six different amendments was carried out. A total of 336 laboratory tests were conducted during a year in 48 land plots of 4×4m, spreading over eight field campaigns. The results show, for the first time to the best of our knowledge, that the bioremediation process can be adjusted quantitatively to an exponential model, following a first-order kinetic equation. The model explains correctly the higher efficiency of some treatments. In the case of hydrocarbon concentrations <16,000mg/kg, it is advisable to use slow-release fertilizer without the use of surfactant; whereas, for concentrations above 30,000mg/kg, the addition of surfactants improves the results considerably.

Improved biodegradation of hydrophobic volatile organic compounds from the air stream in a multilayer biofilter

Biofiltration of n-hexane as a representative of hydrophobic volatile organic compounds (VOCs) at presence and absence of rhamnolipid biosurfactant was studied using a multilayer biofilter packed with scoria, compost, poplar tree skin and sugar beet pulp, for 131 days. The concentration of n-hexane was measured by a gas chromatograph coupled with a flame ionization detector (GC/FID). The results showed that the mean removal efficiency (RE) of n-hexane at the presence of the biosurfactant was two times higher than that at absence of the biosurfactant. According to the results, rhamnolipid can enhance the efficiency of biofiltration of VOCs from polluted air streams.

Biodegradation of crude oil using self-immobilized hydrocarbonoclastic deep sea bacterial consortium

Hydrocarbonoclastic bacterial consortium that utilizes crude oil as carbon and energy source was isolated from marine sediment collected at a depth of 2100 m. Molecular characterization by 16S rRNA gene sequences confirmed that these isolates as Oceanobacillus sp., Nesiotobacter sp., Ruegeria sp., Photobacterium sp., Enterobacter sp., Haererehalobacter sp., Exiguobacterium sp., Acinetobacter sp. and Pseudoalteromonas sp. Self-immobilized consortium degraded more than 85% of total hydrocarbons after 10 days of incubation with 1% (v/v) of crude oil and 0.05% (v/v) of Tween 80 (non-ionic surfactant) at 28 ± 2 °C. The addition of nitrogen and phosphorus sources separately i.e. 0.1% (v/v) of CO (NH₂)₂ or K₂HPO₄ enhanced the hydrocarbon utilization percentage. The pathways of microbial degradation of hydrocarbons were confirmed by FTIR, GC-MS, ¹H and ¹³C NMR spectroscopy analyses. These results demonstrated a novel approach using hydrocarbonoclastic self-immobilized deep sea bacterial consortium for eco-friendly bioremediation.

EFFECT OF NITROGEN AND HUMIC FERTILIZERS ON THE BIOCHEMICAL STATE OF OIL‐CONTAMINATED CHERNOZEM

Aim. In this paper, we aim to assess the effect of nitrogen and humic fertilizers on the biochemical state of oil‐contaminated chernozem.

Methods. In order to simulate the oil pollu‐ tion, chernozem was exposed to oil doses constituting 1, 5 and 10% of the soil mass for 30, 60 and 90 days. For simulating bioremediation of oil‐contaminated chernozem, the following fertilizers were used: potassium and sodium humates, urea and nitroammophos. Nitrogen fertilizers – urea and nitroammophos having a nitrogen content of 46% and 15%, respectively – were applied to the soil for the purposes of restoring the equilibrium between carbon and nitrogen. Humic fertilizers (potassium and sodium humates) were applied to the soil for stimulating the indigenous oil destructive microbiota. In order to assess the biological activity of the soil, we determined catalase activity, invertase activity, as well as CO2 emission intensity.

Results. The effect of urea, nitroammophos, potassium and sodium humates on the enzymatic activity and CO2 emissions of ordinary chernozem, which had been exposed to various doses of oil (1, 5 and 10% of the soil mass) for 90 days, was studied in a model experiment. Following the introduction of nitroammophos into soil with low levels of oil pollution, catalase activity decreased, whereas respiration and invertase activity increased. Urea introduced into the soil contaminat‐ ed with a 10% dose of oil stimulated catalase activity. At oil concentrations of 1 and 5%, the introduction of potassium and sodium humates had a stimulating effect on enzymic activity and carbon dioxide evolution.

Conclusions. It is advisable to use the intensity of CO2 emissions released from the soil, as well as the invertase activity for diagnosing the state of chernozem con‐ taminated with oil (5‐10%) following the introduction of nitrogen and humic ameliorants. At lower doses of oil, it is advisable to assess the state of the soil following the introduction of nitrogen fertilizers by catalase activity. 

Biosurfactant-assisted bioremediation of crude oil by indigenous bacteria isolated from Taean beach sediment

Crude oil and its derivatives are considered as one group of the most pervasive environmental pollutants in marine environments. Bioremediation using oil-degrading bacteria has emerged as a promising green cleanup alternative in more recent years. The employment of biosurfactant-producing and hydrocarbon-utilizing indigenous bacteria enhances the effectiveness of bioremediation by making hydrocarbons bioavailable for degradation. In this study, the best candidates of biosurfactant-producing indigenous bacteria were selected by screening of biochemical tests. The selected bacteria include Bacillus algicola (003-Phe1), Rhodococcus soli (102-Na5), Isoptericola chiayiensis (103-Na4), and Pseudoalteromonas agarivorans (SDRB-Py1). In general, these isolated species caused low surface tension values (33.9-41.3 mN m^-1), high oil spreading (1.2-2.4 cm), and hydrocarbon emulsification (up to 65%) warranting active degradation of hydrocarbons. FT-IR and LC-MS analyses indicated that the monorhamnolipid (Rha-C_16:1) and dirhamnolipid (Rha-Rha-C₆-C_6:1) were commonly produced by the bacteria as potent biosurfactants. The residual crude oil after the biodegradation test was quantitated using GC-MS analysis. The bacteria utilized crude oil as their sole carbon source while the amount of residual crude oil significantly decreased. In addition the cell-free broth containing biosurfactants produced by bacterial strains significantly desorbed crude oil in oil-polluted marine sediment. The selected bacteria might hold additional capacity in crude oil degradation. Biosurfactant-producing indigenous bacteria therefore degrade crude oil hydrocarbon compounds, produce biosurfactants that can increase the emulsification of crude oil and are thus more conducive to the degradation of crude oil.

Biosurfactant-induced remediation of contaminated marine sediments: Current knowledge and future perspectives

The contamination of marine sediments is widespread in coastal regions of the world and represents a major concern for the potential detrimental consequences on ecosystems' health and provision of goods and services for human wellbeing. Thus, there is an urgent need to find sustainable and eco-compatible solutions for the remediation of contaminated sediments. Bioremediation is a low cost and environmental-friendly strategy with a high potential for the remediation of contaminated marine sediments. Here we review the potential application of biosurfactants produced by microbial taxa for the remediation of contaminated marine sediments and we discuss future research needs to develop efficient and eco-sustainable biosurfactant-based strategies for the recovery of contaminated marine sediments, in view of large-scale applications.

Advances in applications of rhamnolipids biosurfactant in environmental remediation: A review

The objective of this review is to provide a comprehensive overview of the advances in the applications of rhamnolipids biosurfactants in soil and ground water remediation for removal of petroleum hydrocarbon and heavy metal contaminants. The properties of rhamnolipids associated with the contaminant removal, that is, solubilization, emulsification, dispersion, foaming, wetting, complexation, and the ability to modify bacterial cell surface properties, were reviewed in the first place. Then current remediation technologies with integration of rhamnolipid were summarized, and the effects and mechanisms for rhamnolipid to facilitate contaminant removal for these technologies were discussed. Finally rhamnolipid-based methods for remediation of the sites co-contaminated by petroleum hydrocarbons and heavy metals were presented and discussed. The review is expected to enhance our understanding on environmental aspects of rhamnolipid and provide some important information to guide the extending use of this fascinating chemical in remediation applications.

Cable Bacteria and the Bioelectrochemical Snorkel: The Natural and Engineered Facets Playing a Role in Hydrocarbons Degradation in Marine Sediments

The composition and metabolic traits of the microbial communities acting in an innovative bioelectrochemical system were here investigated. The system, known as Oil Spill Snorkel, was recently developed to stimulate the oxidative biodegradation of petroleum hydrocarbons in anoxic marine sediments. Next Generation Sequencing was used to describe the microbiome of the bulk sediment and of the biofilm growing attached to the surface of the electrode. The analysis revealed that sulfur cycling primarily drives the microbial metabolic activities occurring in the bioelectrochemical system. In the anoxic zone of the contaminated marine sediment, petroleum hydrocarbon degradation occurred under sulfate-reducing conditions and was lead by different families of Desulfobacterales (46% of total OTUs). Remarkably, the occurrence of filamentous Desulfubulbaceae, known to be capable to vehicle electrons deriving from sulfide oxidation to oxygen serving as a spatially distant electron acceptor, was demonstrated. Differently from the sediment, which was mostly colonized by Deltaproteobacteria, the biofilm at the anode hosted, at high extent, members of Alphaproteobacteria (59%) mostly affiliated to Rhodospirillaceae family (33%) and including several known sulfur- and sulfide-oxidizing genera. Overall, we showed the occurrence in the system of a variety of electroactive microorganisms able to sustain the contaminant biodegradation alone or by means of an external conductive support through the establishment of a bioelectrochemical connection between two spatially separated redox zones and the preservation of an efficient sulfur cycling.

Effects of different agricultural wastes on the dissipation of PAHs and the PAH-degrading genes in a PAH-contaminated soil

Land application of agricultural wastes is considered as a promising bioremediation approach for cleaning up soils contaminated by aged polycyclic aromatic hydrocarbons (PAHs). However, it remains largely unknown about how microbial PAH-degraders, which play a key role in the biodegradation of soil PAHs, respond to the amendments of agricultural wastes. Here, a 90-day soil microcosm study was conducted to compare the effects of three agricultural wastes (i.e. WS, wheat stalk; MCSW, mushroom cultivation substrate waste; and CM, cow manure) on the dissipation of aged PAHs and the abundance and community structure of PAH-degrading microorganisms. The results showed that all the three agricultural wastes accelerated the dissipation of aged PAHs and significantly increased abundances of the bacterial 16S rRNA and PAH-degrading genes (i.e. pdo1 and nah). CM and MCSW with lower ratios of C:N eliminated soil PAHs more efficiently than WS with a high ratio of C:N. Low molecular weight PAHs were dissipated more quickly than those with high molecular weight. Phylogenetic analysis revealed that all of the nah and C12O clones were affiliated within Betaproteobacteria and Gammaproteobacteria, and application of agricultural wastes significantly changed the community structure of the microorganisms harboring nah and C12O genes, particularly in the CM treatment. Taken together, our findings suggest that the three tested agricultural wastes could accelerate the degradation of aged PAHs most likely through changing the abundances and community structure of microbial PAH degraders.

Current status in biotechnological production and applications of glycolipid biosurfactants

Biosurfactants are natural compounds with surface activity and emulsifying properties produced by several types of microorganisms and have been considered an interesting alternative to synthetic surfactants. Glycolipids are promising biosurfactants, due to low toxicity, biodegradability, and chemical stability in different conditions and also because they have many biological activities, allowing wide applications in different fields. In this review, we addressed general information about families of glycolipids, rhamnolipids, sophorolipids, mannosylerythritol lipids, and trehalose lipids, describing their chemical and surface characteristics, recent studies using alternative substrates, and new strategies to improve of production, beyond their specificities. We focus in providing recent developments and trends in biotechnological process and medical and industrial applications.

Bioremediation techniques-classification based on site of application: principles, advantages, limitations and prospects

Environmental pollution has been on the rise in the past few decades owing to increased human activities on energy reservoirs, unsafe agricultural practices and rapid industrialization. Amongst the pollutants that are of environmental and public health concerns due to their toxicities are: heavy metals, nuclear wastes, pesticides, green house gases, and hydrocarbons. Remediation of polluted sites using microbial process (bioremediation) has proven effective and reliable due to its eco-friendly features. Bioremediation can either be carried out ex situ or in situ, depending on several factors, which include but not limited to cost, site characteristics, type and concentration of pollutants. Generally, ex situ techniques apparently are more expensive compared to in situ techniques as a result of additional cost attributable to excavation. However, cost of on-site installation of equipment, and inability to effectively visualize and control the subsurface of polluted sites are of major concerns when carrying out in situ bioremediation. Therefore, choosing appropriate bioremediation technique, which will effectively reduce pollutant concentrations to an innocuous state, is crucial for a successful bioremediation project. Furthermore, the two major approaches to enhance bioremediation are biostimulation and bioaugmentation provided that environmental factors, which determine the success of bioremediation, are maintained at optimal range. This review provides more insight into the two major bioremediation techniques, their principles, advantages, limitations and prospects.

Biodegradation of marine crude oil pollution using a salt-tolerant bacterial consortium isolated from Bohai Bay, China

This study aims at constructing an efficient bacterial consortium to biodegrade crude oil spilled in China's Bohai Sea. In this study, TCOB-1 (Ochrobactrum), TCOB-2 (Brevundimonas), TCOB-3 (Brevundimonas), TCOB-4 (Bacillus) and TCOB-5 (Castellaniella) were isolated from Bohai Bay. Through the analysis of hydrocarbon biodegradation, TCOB-4 was found to biodegrade more middle-chain n-alkanes (from C17 to C23) and long-chain n-alkanes (C31-C36). TCOB-5 capable to degrade more n-alkanes including C24-C30 and aromatics. On the basis of complementary advantages, TCOB-4 and TCOB-5 were chosen to construct a consortium which was capable of degrading about 51.87% of crude oil (2% w/v) after 1week of incubation in saline MSM (3% NaCl). It is more efficient compared with single strain. In order to biodegrade crude oil, the construction of bacterial consortia is essential and the principle of complementary advantages could reduce competition between microbes.

Metagenomic and functional analyses of the consequences of reduction of bacterial diversity on soil functions and bioremediation in diesel-contaminated microcosms

The relationship between microbial biodiversity and soil function is an important issue in ecology, yet most studies have been performed in pristine ecosystems. Here, we assess the role of microbial diversity in ecological function and remediation strategies in diesel-contaminated soils. Soil microbial diversity was manipulated using a removal by dilution approach and microbial functions were determined using both metagenomic analyses and enzymatic assays. A shift from Proteobacteria- to Actinobacteria-dominant communities was observed when species diversity was reduced. Metagenomic analysis showed that a large proportion of functional gene categories were significantly altered by the reduction in biodiversity. The abundance of genes related to the nitrogen cycle was significantly reduced in the low-diversity community, impairing denitrification. In contrast, the efficiency of diesel biodegradation was increased in the low-diversity community and was further enhanced by addition of red clay as a stimulating agent. Our results suggest that the relationship between microbial diversity and ecological function involves trade-offs among ecological processes, and should not be generalized as a positive, neutral, or negative relationship.

Effect of enhanced reactive nitrogen availability on plant-sediment mediated degradation of polycyclic aromatic hydrocarbons in contaminated mangrove sediment

As land-ocean interaction zones, mangrove systems receive substantial polycyclic aromatic hydrocarbons (PAHs) from sewage and combustion of fossil fuel. In this study, we investigated the relationship between dissolved inorganic nitrogen (DIN) availability and degradation rate of phenanthrene, a typical PAH compound, in mangrove plant-sediment systems, using Avicennia marina as a model plant. After 50 day incubation, phenanthrene removal ratios in sediments ranged from 53.8% to 97.2%. In non-rhizosphere sediment, increasing DIN accessibility increased microbial biomass and total microbial activity, while enhancements in population size of phenanthrene degradation bacteria (PDB) and phenanthrene degradation rates were insignificant. In contrast, the presence of excessive DIN in rhizosphere sediment resulted in a significantly large number of PDB, leading to a rapid dissipation rate of phenanthrene. The differences in degradation rates and abundances of degrader in sediment may be explained by the enhanced root activity due to the elevation in DIN accessibility.

Allochthonous bioaugmentation in ex situ treatment of crude oil-polluted sediments in the presence of an effective degrading indigenous microbiome

Oil-polluted sediment bioremediation depends on both physicochemical and biological parameters, but the effect of the latter cannot be evaluated without the optimization of the former. We aimed in optimizing the physicochemical parameters related to biodegradation by applying an ex-situ landfarming set-up combined with biostimulation to oil-polluted sediment, in order to determine the added effect of bioaugmentation by four allochthonous oil-degrading bacterial consortia in relation to the degradation efficiency of the indigenous community. We monitored hydrocarbon degradation, sediment ecotoxicity and hydrolytic activity, bacterial population sizes and bacterial community dynamics, characterizing the dominant taxa through time and at each treatment. We observed no significant differences in total degradation, but increased ecotoxicity between the different treatments receiving both biostimulation and bioaugmentation and the biostimulated-only control. Moreover, the added allochthonous bacteria quickly perished and were rarely detected, their addition inducing minimal shifts in community structure although it altered the distribution of the residual hydrocarbons in two treatments. Therefore, we concluded that biodegradation was mostly performed by the autochthonous populations while bioaugmentation, in contrast to biostimulation, did not enhance the remediation process. Our results indicate that when environmental conditions are optimized, the indigenous microbiome at a polluted site will likely outperform any allochthonous consortium.

Biosurfactant production from marine hydrocarbon-degrading consortia and pure bacterial strains using crude oil as carbon source

Biosurfactants (BSs) are "green" amphiphilic molecules produced by microorganisms during biodegradation, increasing the bioavailability of organic pollutants. In this work, the BS production yield of marine hydrocarbon degraders isolated from Elefsina bay in Eastern Mediterranean Sea has been investigated. The drop collapse test was used as a preliminary screening test to confirm BS producing strains or mixed consortia. The community structure of the best consortia based on the drop collapse test was determined by 16S-rDNA pyrotag screening. Subsequently, the effect of incubation time, temperature, substrate and supplementation with inorganic nutrients, on BS production, was examined. Two types of BS - lipid mixtures were extracted from the culture broth; the low molecular weight BS Rhamnolipids and Sophorolipids. Crude extracts were purified by silica gel column chromatography and then identified by thin layer chromatography and Fourier transform infrared spectroscopy. Results indicate that BS production yield remains constant and low while it is independent of the total culture biomass, carbon source, and temperature. A constant BS concentration in a culture broth with continuous degradation of crude oil (CO) implies that the BS producing microbes generate no more than the required amount of BSs that enables biodegradation of the CO. Isolated pure strains were found to have higher specific production yields than the complex microbial marine community-consortia. The heavy oil fraction of CO has emerged as a promising substrate for BS production (by marine BS producers) with fewer impurities in the final product. Furthermore, a particular strain isolated from sediments, Paracoccus marcusii, may be an optimal choice for bioremediation purposes as its biomass remains trapped in the hydrocarbon phase, not suffering from potential dilution effects by sea currents.