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Rabaan AA, Bakhrebah MA, Alotaibi J, Natto ZS, Alkhaibari RS, Alawad E, Alshammari HM, Alwarthan S, Alhajri M, Almogbel MS, Aljohani MH, Alofi FS, Alharbi N, Al-Adsani W, Alsulaiman AM, Aldali J, Ibrahim FA, Almaghrabi RS, Al-Omari A, Garout M. Unleashing the power of artificial intelligence for diagnosing and treating infectious diseases: A comprehensive review. J Infect Public Health 2023; 16:1837-1847. [PMID: 37769584 DOI: 10.1016/j.jiph.2023.08.021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2023] [Revised: 07/19/2023] [Accepted: 08/27/2023] [Indexed: 10/03/2023] Open
Abstract
Infectious diseases present a global challenge, requiring accurate diagnosis, effective treatments, and preventive measures. Artificial intelligence (AI) has emerged as a promising tool for analysing complex molecular data and improving the diagnosis, treatment, and prevention of infectious diseases. Computer-aided detection (CAD) using convolutional neural networks (CNN) has gained prominence for diagnosing tuberculosis (TB) and other infectious diseases such as COVID-19, HIV, and viral pneumonia. The review discusses the challenges and limitations associated with AI in this field and explores various machine-learning models and AI-based approaches. Artificial neural networks (ANN), recurrent neural networks (RNN), support vector machines (SVM), multilayer neural networks (MLNN), CNN, long short-term memory (LSTM), and random forests (RF) are among the models discussed. The review emphasizes the potential of AI to enhance the accuracy and efficiency of diagnosis, treatment, and prevention of infectious diseases, highlighting the need for further research and development in this area.
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Affiliation(s)
- Ali A Rabaan
- Molecular Diagnostic Laboratory, Johns Hopkins Aramco Healthcare, Dhahran 31311, Saudi Arabia; College of Medicine, Alfaisal University, Riyadh 11533, Saudi Arabia; Department of Public Health and Nutrition, The University of Haripur, Haripur 22610, Pakistan.
| | - Muhammed A Bakhrebah
- Life Science and Environment Research Institute, King Abdulaziz City for Science and Technology (KACST), Riyadh 11442, Saudi Arabia
| | - Jawaher Alotaibi
- Infectious Diseases Unit, Department of Medicine, King Faisal Specialist Hospital and Research Center, Riyadh 11564, Saudi Arabia
| | - Zuhair S Natto
- Department of Dental Public Health, Faculty of Dentistry, King Abdulaziz University, Jeddah 21589, Saudi Arabia
| | - Rahaf S Alkhaibari
- Molecular Diagnostic Laboratory, Dammam Regional Laboratory and Blood Bank, Dammam 31411, Saudi Arabia
| | - Eman Alawad
- Adult Infectious Diseases Department, Prince Mohammed Bin Abdulaziz Hospital, Riyadh 11474, Saudi Arabia
| | - Huda M Alshammari
- Clinical Pharmacy Department, College of Pharmacy, Northern Border University, Arar 9280, Saudi Arabia
| | - Sara Alwarthan
- Department of Internal Medicine, College of Medicine, Imam Abdulrahman Bin Faisal University, Dammam 34212, Saudi Arabia
| | - Mashael Alhajri
- Department of Internal Medicine, College of Medicine, Imam Abdulrahman Bin Faisal University, Dammam 34212, Saudi Arabia
| | - Mohammed S Almogbel
- Department of Medical Laboratory Sciences, College of Applied Medical Sciences, University of Hail, Hail 4030, Saudi Arabia
| | - Maha H Aljohani
- Department of Infectious Diseases, King Fahad Hospital, Madinah 42351, Saudi Arabia
| | - Fadwa S Alofi
- Department of Infectious Diseases, King Fahad Hospital, Madinah 42351, Saudi Arabia
| | - Nada Alharbi
- Department of Basic Medical Sciences, College of Medicine, Princess Nourah bint Abdulrahman University, Riyadh 11671, Saudi Arabia.
| | - Wasl Al-Adsani
- Department of Medicine, Infectious Diseases Hospital, Kuwait City 63537, Kuwait; Department of Infectious Diseases, Hampton Veterans Administration Medical Center, Hampton, VA 23667, USA
| | | | - Jehad Aldali
- Department of Pathology, College of Medicine, Imam Mohammad Ibn Saud Islamic University, Riyadh 13317, Saudi Arabia
| | - Fatimah Al Ibrahim
- Infectious Disease Division, Department of Internal Medicine, Dammam Medical Complex, Dammam 32245, Saudi Arabia
| | - Reem S Almaghrabi
- Organ Transplant Center of Excellence, King Faisal Specialist Hospital and Research Center, Riyadh 11211, Saudi Arabia
| | - Awad Al-Omari
- College of Medicine, Alfaisal University, Riyadh 11533, Saudi Arabia; Research Center, Dr. Sulaiman Al Habib Medical Group, Riyadh 11372, Saudi Arabia
| | - Mohammed Garout
- Department of Community Medicine and Health Care for Pilgrims, Faculty of Medicine, Umm Al-Qura University, Makkah 21955, Saudi Arabia.
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Mukherjee R, Kundu A, Mukherjee I, Gupta D, Tiwari P, Khanna A, Shorfuzzaman M. IoT-cloud based healthcare model for COVID-19 detection: an enhanced k-Nearest Neighbour classifier based approach. COMPUTING 2023; 105. [PMCID: PMC8085103 DOI: 10.1007/s00607-021-00951-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
COVID - 19 affected severely worldwide. The pandemic has caused many causalities in a very short span. The IoT-cloud-based healthcare model requirement is utmost in this situation to provide a better decision in the covid-19 pandemic. In this paper, an attempt has been made to perform predictive analytics regarding the disease using a machine learning classifier. This research proposed an enhanced KNN (k NearestNeighbor) algorithm eKNN, which did not randomly choose the value of k. However, it used a mathematical function of the dataset’s sample size while determining the k value. The enhanced KNN algorithm eKNN has experimented on 7 benchmark COVID-19 datasets of different size, which has been gathered from standard data cloud of different countries (Brazil, Mexico, etc.). It appeared that the enhanced KNN classifier performs significantly better than ordinary KNN. The second research question augmented the enhanced KNN algorithm with feature selection using ACO (Ant Colony Optimization). Results indicated that the enhanced KNN classifier along with the feature selection mechanism performed way better than enhanced KNN without feature selection. This paper involves proposing an improved KNN attempting to find an optimal value of k and studying IoT-cloud-based COVID - 19 detection.
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Affiliation(s)
- Rajendrani Mukherjee
- Department of Computer Science and Engineering, University of Engineering and Management, Kolkata, India
| | - Aurghyadip Kundu
- Department of Computer Science and Engineering, Brainware University, Kolkata, India
| | - Indrajit Mukherjee
- Department of Computer Science and Engineering, Birla Institute of Technology, Mesra, India
| | - Deepak Gupta
- Maharaja Agrasen Institute of Technology, Delhi, India
| | - Prayag Tiwari
- Department of Computer Science, Aalto University, Espoo, Finland
| | - Ashish Khanna
- Maharaja Agrasen Institute of Technology, Delhi, India
| | - Mohammad Shorfuzzaman
- Department of Computer Science, College of Computers and Information Technology, Taif University, Taif, 21944 Saudi Arabia
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Karthik R, Menaka R, Hariharan M, Kathiresan GS. AI for COVID-19 Detection from Radiographs: Incisive Analysis of State of the Art Techniques, Key Challenges and Future Directions. Ing Rech Biomed 2022; 43:486-510. [PMID: 34336141 PMCID: PMC8312058 DOI: 10.1016/j.irbm.2021.07.002] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2021] [Revised: 06/14/2021] [Accepted: 07/19/2021] [Indexed: 12/24/2022]
Abstract
Background and objective In recent years, Artificial Intelligence has had an evident impact on the way research addresses challenges in different domains. It has proven to be a huge asset, especially in the medical field, allowing for time-efficient and reliable solutions. This research aims to spotlight the impact of deep learning and machine learning models in the detection of COVID-19 from medical images. This is achieved by conducting a review of the state-of-the-art approaches proposed by the recent works in this field. Methods The main focus of this study is the recent developments of classification and segmentation approaches to image-based COVID-19 detection. The study reviews 140 research papers published in different academic research databases. These papers have been screened and filtered based on specified criteria, to acquire insights prudent to image-based COVID-19 detection. Results The methods discussed in this review include different types of imaging modality, predominantly X-rays and CT scans. These modalities are used for classification and segmentation tasks as well. This review seeks to categorize and discuss the different deep learning and machine learning architectures employed for these tasks, based on the imaging modality utilized. It also hints at other possible deep learning and machine learning architectures that can be proposed for better results towards COVID-19 detection. Along with that, a detailed overview of the emerging trends and breakthroughs in Artificial Intelligence-based COVID-19 detection has been discussed as well. Conclusion This work concludes by stipulating the technical and non-technical challenges faced by researchers and illustrates the advantages of image-based COVID-19 detection with Artificial Intelligence techniques.
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Affiliation(s)
- R Karthik
- Centre for Cyber Physical Systems, Vellore Institute of Technology, Chennai, India
| | - R Menaka
- Centre for Cyber Physical Systems, Vellore Institute of Technology, Chennai, India
| | - M Hariharan
- School of Computing Sciences and Engineering, Vellore Institute of Technology, Chennai, India
| | - G S Kathiresan
- School of Electronics Engineering, Vellore Institute of Technology, Chennai, India
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Alqudaihi KS, Aslam N, Khan IU, Almuhaideb AM, Alsunaidi SJ, Ibrahim NMAR, Alhaidari FA, Shaikh FS, Alsenbel YM, Alalharith DM, Alharthi HM, Alghamdi WM, Alshahrani MS. Cough Sound Detection and Diagnosis Using Artificial Intelligence Techniques: Challenges and Opportunities. IEEE ACCESS : PRACTICAL INNOVATIONS, OPEN SOLUTIONS 2021; 9:102327-102344. [PMID: 34786317 PMCID: PMC8545201 DOI: 10.1109/access.2021.3097559] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2021] [Accepted: 07/09/2021] [Indexed: 06/02/2023]
Abstract
Coughing is a common symptom of several respiratory diseases. The sound and type of cough are useful features to consider when diagnosing a disease. Respiratory infections pose a significant risk to human lives worldwide as well as a significant economic downturn, particularly in countries with limited therapeutic resources. In this study we reviewed the latest proposed technologies that were used to control the impact of respiratory diseases. Artificial Intelligence (AI) is a promising technology that aids in data analysis and prediction of results, thereby ensuring people's well-being. We conveyed that the cough symptom can be reliably used by AI algorithms to detect and diagnose different types of known diseases including pneumonia, pulmonary edema, asthma, tuberculosis (TB), COVID19, pertussis, and other respiratory diseases. We also identified different techniques that produced the best results for diagnosing respiratory disease using cough samples. This study presents the most recent challenges, solutions, and opportunities in respiratory disease detection and diagnosis, allowing practitioners and researchers to develop better techniques.
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Affiliation(s)
- Kawther S. Alqudaihi
- Department of Computer ScienceCollege of Computer Science and Information TechnologyImam Abdulrahman Bin Faisal UniversityDammam31441Saudi Arabia
| | - Nida Aslam
- Department of Computer ScienceCollege of Computer Science and Information TechnologyImam Abdulrahman Bin Faisal UniversityDammam31441Saudi Arabia
| | - Irfan Ullah Khan
- Department of Computer ScienceCollege of Computer Science and Information TechnologyImam Abdulrahman Bin Faisal UniversityDammam31441Saudi Arabia
| | - Abdullah M. Almuhaideb
- Department of Networks and CommunicationsCollege of Computer Science and Information TechnologyImam Abdulrahman Bin Faisal UniversityDammam31441Saudi Arabia
| | - Shikah J. Alsunaidi
- Department of Computer ScienceCollege of Computer Science and Information TechnologyImam Abdulrahman Bin Faisal UniversityDammam31441Saudi Arabia
| | - Nehad M. Abdel Rahman Ibrahim
- Department of Computer ScienceCollege of Computer Science and Information TechnologyImam Abdulrahman Bin Faisal UniversityDammam31441Saudi Arabia
| | - Fahd A. Alhaidari
- Department of Networks and CommunicationsCollege of Computer Science and Information TechnologyImam Abdulrahman Bin Faisal UniversityDammam31441Saudi Arabia
| | - Fatema S. Shaikh
- Department of Computer Information SystemsCollege of Computer Science and Information TechnologyImam Abdulrahman Bin Faisal UniversityDammam31441Saudi Arabia
| | - Yasmine M. Alsenbel
- Department of Computer ScienceCollege of Computer Science and Information TechnologyImam Abdulrahman Bin Faisal UniversityDammam31441Saudi Arabia
| | - Dima M. Alalharith
- Department of Computer ScienceCollege of Computer Science and Information TechnologyImam Abdulrahman Bin Faisal UniversityDammam31441Saudi Arabia
| | - Hajar M. Alharthi
- Department of Computer ScienceCollege of Computer Science and Information TechnologyImam Abdulrahman Bin Faisal UniversityDammam31441Saudi Arabia
| | - Wejdan M. Alghamdi
- Department of Computer ScienceCollege of Computer Science and Information TechnologyImam Abdulrahman Bin Faisal UniversityDammam31441Saudi Arabia
| | - Mohammed S. Alshahrani
- Department of Emergency MedicineCollege of MedicineImam Abdulrahman Bin Faisal UniversityDammam31441Saudi Arabia
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Shiri I, Sorouri M, Geramifar P, Nazari M, Abdollahi M, Salimi Y, Khosravi B, Askari D, Aghaghazvini L, Hajianfar G, Kasaeian A, Abdollahi H, Arabi H, Rahmim A, Radmard AR, Zaidi H. Machine learning-based prognostic modeling using clinical data and quantitative radiomic features from chest CT images in COVID-19 patients. Comput Biol Med 2021; 132:104304. [PMID: 33691201 PMCID: PMC7925235 DOI: 10.1016/j.compbiomed.2021.104304] [Citation(s) in RCA: 54] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2021] [Revised: 02/26/2021] [Accepted: 02/27/2021] [Indexed: 12/16/2022]
Abstract
OBJECTIVE To develop prognostic models for survival (alive or deceased status) prediction of COVID-19 patients using clinical data (demographics and history, laboratory tests, visual scoring by radiologists) and lung/lesion radiomic features extracted from chest CT images. METHODS Overall, 152 patients were enrolled in this study protocol. These were divided into 106 training/validation and 46 test datasets (untouched during training), respectively. Radiomic features were extracted from the segmented lungs and infectious lesions separately from chest CT images. Clinical data, including patients' history and demographics, laboratory tests and radiological scores were also collected. Univariate analysis was first performed (q-value reported after false discovery rate (FDR) correction) to determine the most predictive features among all imaging and clinical data. Prognostic modeling of survival was performed using radiomic features and clinical data, separately or in combination. Maximum relevance minimum redundancy (MRMR) and XGBoost were used for feature selection and classification. The receiver operating characteristic (ROC) curve and the area under the ROC curve (AUC), sensitivity, specificity, and accuracy were used to assess the prognostic performance of the models on the test datasets. RESULTS For clinical data, cancer comorbidity (q-value < 0.01), consciousness level (q-value < 0.05) and radiological score involved zone (q-value < 0.02) were found to have high correlated features with outcome. Oxygen saturation (AUC = 0.73, q-value < 0.01) and Blood Urea Nitrogen (AUC = 0.72, q-value = 0.72) were identified as high clinical features. For lung radiomic features, SAHGLE (AUC = 0.70) and HGLZE (AUC = 0.67) from GLSZM were identified as most prognostic features. Amongst lesion radiomic features, RLNU from GLRLM (AUC = 0.73), HGLZE from GLSZM (AUC = 0.73) had the highest performance. In multivariate analysis, combining lung, lesion and clinical features was determined to provide the most accurate prognostic model (AUC = 0.95 ± 0.029 (95%CI: 0.95-0.96), accuracy = 0.88 ± 0.046 (95% CI: 0.88-0.89), sensitivity = 0.88 ± 0.066 (95% CI = 0.87-0.9) and specificity = 0.89 ± 0.07 (95% CI = 0.87-0.9)). CONCLUSION Combination of radiomic features and clinical data can effectively predict outcome in COVID-19 patients. The developed model has significant potential for improved management of COVID-19 patients.
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Affiliation(s)
- Isaac Shiri
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, CH-1211, Geneva, Switzerland
| | - Majid Sorouri
- Digestive Diseases Research Center, Digestive Diseases Research Institute, Tehran University of Medical Sciences, Tehran, Iran
| | - Parham Geramifar
- Research Center for Nuclear Medicine, Shariati Hospital, Tehran University of Medical Sciences, Tehran, Iran
| | - Mostafa Nazari
- Department of Biomedical Engineering and Medical Physics, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Mohammad Abdollahi
- Digestive Diseases Research Center, Digestive Diseases Research Institute, Tehran University of Medical Sciences, Tehran, Iran
| | - Yazdan Salimi
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, CH-1211, Geneva, Switzerland
| | - Bardia Khosravi
- Digestive Diseases Research Center, Digestive Diseases Research Institute, Tehran University of Medical Sciences, Tehran, Iran
| | - Dariush Askari
- Department of Radiology Technology, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Leila Aghaghazvini
- Department of Radiology, Shariati Hospital, Tehran University of Medical Sciences, Tehran, Iran
| | - Ghasem Hajianfar
- Rajaie Cardiovascular Medical and Research Center, Iran University of Medical Sciences, Tehran, Iran
| | - Amir Kasaeian
- Digestive Diseases Research Center, Digestive Diseases Research Institute, Tehran University of Medical Sciences, Tehran, Iran,Hematology, Oncology and Stem Cell Transplantation Research Center, Research Institute for Oncology, Hematology and Cell Therapy, Tehran University of Medical Sciences, Tehran, Iran,Inflammation Research Center, Tehran University of Medical Sciences, Tehran, Iran
| | - Hamid Abdollahi
- Department of Radiologic Sciences and Medical Physics, Kerman University of Medical Sciences, Kerman, Iran
| | - Hossein Arabi
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, CH-1211, Geneva, Switzerland
| | - Arman Rahmim
- Departments of Radiology and Physics, University of British Columbia, Vancouver, BC, Canada,Department of Integrative Oncology, BC Cancer Research Institute, Vancouver, BC, Canada
| | - Amir Reza Radmard
- Department of Radiology, Shariati Hospital, Tehran University of Medical Sciences, Tehran, Iran,Corresponding author. Department of Radiology, Shariati Hospital, Tehran University of Medical Sciences, Tehran, Iran
| | - Habib Zaidi
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, CH-1211, Geneva, Switzerland,Geneva University Neurocenter, Geneva University, Geneva, Switzerland,Department of Nuclear Medicine and Molecular Imaging, University of Groningen, University Medical Center Groningen, Groningen, Netherlands,Department of Nuclear Medicine, University of Southern Denmark, Odense, Denmark,Corresponding author. Geneva University Hospital, Division of Nuclear Medicine and Molecular Imaging, CH-1211, Geneva, Switzerland
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Shyam Sunder Reddy K, Padmanabha Reddy YCA, Mallikarjuna Rao C. Recurrent neural network based prediction of number of COVID-19 cases in India. MATERIALS TODAY. PROCEEDINGS 2020:S2214-7853(20)38723-X. [PMID: 33224735 PMCID: PMC7670896 DOI: 10.1016/j.matpr.2020.11.117] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 09/24/2020] [Accepted: 11/08/2020] [Indexed: 11/18/2022]
Abstract
COVID-19 has become the most devastating disease of the current century and is pandemic. As per WHO report, there are globally 31,174,627 confirmed cases including 962,613 deaths as of 22nd September,2020. The disease is spreading through outbreaks despite the availability of latest technologies for treatment of patients. In this paper, we proposed a neural network-based prediction of number of cases in India due to COVID-19. Recurrent neural network (RNN) based LSTM is applied on India dataset for prediction. LSTM networks are a type of RNN capable of learning order dependence in sequence forecasting problems. We analyze the performance of the network and then compare it with two parameter reduced variants of LSTM, obtained by elimination of hidden unit signals, bias and input signal. For performance evaluation, we used the MSE measure.
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Affiliation(s)
- K Shyam Sunder Reddy
- Department of Information Technology, Vasavi College of Engineering, Hyderabad 500031, India
| | - Y C A Padmanabha Reddy
- Department of Computer Science & Engineering, Madanapalle Institute of Technology & Science, Madanapalle, Andhra Pradesh 517 325, India
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