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Sutormin OS, Nemtseva EV, Gulnov DV, Sukovatyi LA, Tyrtyshnaya YS, Lisitsa AE, Kratasyuk VA. Coupling of NAD(P)H:FMN-oxidoreductase and luciferase from luminous bacteria in a viscous medium: Finding the weakest link in the chain. Photochem Photobiol 2024; 100:465-476. [PMID: 37583116 DOI: 10.1111/php.13845] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2023] [Revised: 07/15/2023] [Accepted: 07/31/2023] [Indexed: 08/17/2023]
Abstract
The study aims at revealing the mechanisms of the viscous medium effects on the kinetic features of NAD(P)H:FMN-oxidoreductase from luminous bacteria (Red), which are exhibited in a single enzyme assay and in coupling with bacterial luciferase (BLuc). Different concentrations of glycerol and sucrose were used to vary the medium viscosity. The activity of Red, alone and in the presence of BLuc, was analyzed, as well as BLuc activity in the presence of Red, whereas in the absence of BLuc, the Red activity was suppressed in viscous medium, and in the presence of BLuc, the increase in Red activity was observed at low glycerol concentrations (5-20 wt%). The interaction of glycerol and sucrose with Red substrates FMN and NADH was studied using absorption spectroscopy and molecular dynamics. Glycerol was found to form hydrogen bonds with the phosphate groups of the substrates, unlike sucrose. A mechanism for the activation of Red in the presence of BLuc in glycerol solutions through the acceleration of FMN reoxidation was proposed. Thus, it was concluded that, under the conditions used, the weakest link of the coupled enzyme system BLuc-Red in viscous medium is the FMN concentration, which depends on Red activity and the medium viscosity.
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Affiliation(s)
- Oleg S Sutormin
- Department of Chemistry, Institute of Natural and Technical Sciences, Surgut State University, Surgut, Russia
- Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Krasnoyarsk, Russia
| | - Elena V Nemtseva
- Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Krasnoyarsk, Russia
- Photobiology Laboratory, Institute of Biophysics, Russian Academy of Sciences, Krasnoyarsk, Russia
| | - Dmitry V Gulnov
- Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Krasnoyarsk, Russia
| | - Lev A Sukovatyi
- Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Krasnoyarsk, Russia
| | - Yekaterina S Tyrtyshnaya
- Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Krasnoyarsk, Russia
| | - Albert E Lisitsa
- Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Krasnoyarsk, Russia
| | - Valentina A Kratasyuk
- Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Krasnoyarsk, Russia
- Photobiology Laboratory, Institute of Biophysics, Russian Academy of Sciences, Krasnoyarsk, Russia
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Zhukova GV, Sutormin OS, Sukovataya IE, Maznyak NV, Kratasyuk VA. Bioluminescent-Triple-Enzyme-Based Biosensor with Lactate Dehydrogenase for Non-Invasive Training Load Monitoring. SENSORS (BASEL, SWITZERLAND) 2023; 23:2865. [PMID: 36905066 PMCID: PMC10007358 DOI: 10.3390/s23052865] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/25/2023] [Revised: 02/25/2023] [Accepted: 03/03/2023] [Indexed: 06/18/2023]
Abstract
Saliva is one of the most significant biological liquids for the development of a simple, rapid, and non-invasive biosensor for training load diagnostics. There is an opinion that enzymatic bioassays are more relevant in terms of biology. The present paper is aimed at investigating the effects of saliva samples, upon altering the lactate content, on the activity of a multi-enzyme, namely lactate dehydrogenase + NAD(P)H:FMN-oxidoreductase + luciferase (LDH + Red + Luc). Optimal enzymes and their substrate composition of the proposed multi-enzyme system were chosen. During the tests of the lactate dependence, the enzymatic bioassay showed good linearity to lactate in the range from 0.05 mM to 0.25 mM. The activity of the LDH + Red + Luc enzyme system was tested in the presence of 20 saliva samples taken from students whose lactate levels were compared by the Barker and Summerson colorimetric method. The results showed a good correlation. The proposed LDH + Red + Luc enzyme system could be a useful, competitive, and non-invasive tool for correct and rapid monitoring of lactate in saliva. This enzyme-based bioassay is easy to use, rapid, and has the potential to deliver point-of-care diagnostics in a cost-effective manner.
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Affiliation(s)
- Galina V. Zhukova
- Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, 660041 Krasnoyarsk, Russia
| | - Oleg S. Sutormin
- Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, 660041 Krasnoyarsk, Russia
- Department of Chemistry, Institute of Natural and Technical Sciences, Surgut State University, 628412 Surgut, Russia
| | - Irina E. Sukovataya
- Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, 660041 Krasnoyarsk, Russia
| | - Natalya V. Maznyak
- School of Non-Ferrous Metals and Materials Science, Siberian Federal University, 660041 Krasnoyarsk, Russia
| | - Valentina A. Kratasyuk
- Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, 660041 Krasnoyarsk, Russia
- Photobiology Laboratory, Institute of Biophysics, Federal Research Center ‘Krasnoyarsk Science Center’, Siberian Branch of the Russian Academy of Sciences, 660036 Krasnoyarsk, Russia
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Toxicity of Different Types of Surfactants via Cellular and Enzymatic Assay Systems. Int J Mol Sci 2022; 24:ijms24010515. [PMID: 36613956 PMCID: PMC9820146 DOI: 10.3390/ijms24010515] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2022] [Revised: 12/26/2022] [Accepted: 12/27/2022] [Indexed: 12/29/2022] Open
Abstract
Surfactants have a widespread occurrence, not only as household detergents, but also in their application in industry and medicine. There are numerous bioassays for assessing surfactant toxicity, but investigations of their impact on biological systems at the molecular level are still needed. In this paper, luminous marine bacteria and their coupled NAD(P)H:FMN-oxidoreductase + luciferase (Red + Luc) enzyme system was applied to examine the effects of different types of surfactants, including cationic cetyltrimethylammonium bromide (CTAB), non-ionic polyoxyethylene 20 sorbitan monooleate (Tween 80) and anionic sodium lauryl sulfate (SLS), and to assess whether the Red + Luc enzyme system can be used as a more sensitive indicator of toxicity. It was shown that the greatest inhibitory effect of the surfactants on the activity of luminous bacteria and the Red + Luc enzyme system was in the presence of SLS samples. The calculated IC50 and EC50 values of SLS were 10-5 M and 10-2 M for the enzymatic and cellular assay systems, respectively. The results highlight the benefits of using the enzymatic assay system in ecotoxicology as a tool for revealing surfactant effects on intracellular proteins if the cellular membrane is damaged under a long-term exposure period in the presence of the surfactants. For this purpose, the bioluminescent enzyme-inhibition-based assay could be used as an advanced research tool for the evaluation of surfactant toxicity at the molecular level of living organisms due to its technical simplicity and rapid response time.
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Staudt A, Brack Y, Jr II, Leal ICR. Biocatalytic synthesis of monoterpene esters – A review study on the phylogenetic evolution of biocatalysts. MOLECULAR CATALYSIS 2022. [DOI: 10.1016/j.mcat.2022.112464] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Selivanovitch E, LaFrance B, Douglas T. Molecular exclusion limits for diffusion across a porous capsid. Nat Commun 2021; 12:2903. [PMID: 34006828 PMCID: PMC8131759 DOI: 10.1038/s41467-021-23200-1] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2020] [Accepted: 04/01/2021] [Indexed: 12/19/2022] Open
Abstract
Molecular communication across physical barriers requires pores to connect the environments on either side and discriminate between the diffusants. Here we use porous virus-like particles (VLPs) derived from bacteriophage P22 to investigate the range of molecule sizes able to gain access to its interior. Although there are cryo-EM models of the VLP, they may not accurately depict the parameters of the molecules able to pass across the pores due to the dynamic nature of the P22 particles in the solution. After encapsulating the enzyme AdhD within the P22 VLPs, we use a redox reaction involving PAMAM dendrimer modified NADH/NAD+ to examine the size and charge limitations of molecules entering P22. Utilizing the three different accessible morphologies of the P22 particles, we determine the effective pore sizes of each and demonstrate that negatively charged substrates diffuse across more readily when compared to those that are neutral, despite the negatively charge exterior of the particles.
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Affiliation(s)
| | - Benjamin LaFrance
- Department of Molecular and Cell Biology, University of California Berkeley, Berkeley, CA, USA
| | - Trevor Douglas
- Department of Chemistry, Indiana University, Bloomington, IN, USA.
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Sukovatyi LA, Lisitsa AE, Kratasyuk VA, Nemtseva EV. The Effect of Osmolytes on the Bioluminescent Reaction of Bacteria: Structural and Dynamic Properties. Biophysics (Nagoya-shi) 2020. [DOI: 10.1134/s0006350920060202] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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Kratasyuk VA, Stepanova LV, Ranjan R, Sutormin OS, Pande S, Zhukova GV, Miller OM, Maznyak NV, Kolenchukova OA. A noninvasive and qualitative bioluminescent assay for express diagnostics of athletes' responses to physical exertion. LUMINESCENCE 2020; 36:384-390. [PMID: 32986910 DOI: 10.1002/bio.3954] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2019] [Revised: 08/10/2020] [Accepted: 09/14/2020] [Indexed: 11/08/2022]
Abstract
Upcoming professional sports authorities seek rapid noninvasive biosensing tools for regular monitoring of athletes' physiological states. The analysis of saliva through luminescence-based biosensors has been perceived as a suitable candidate for such purposes. The present study reports a qualitative bioluminescence assay based on a coupled enzyme system that consists of bacterial luciferase (BLuc) and nicotinamide adenine dinucleotide (NADH):flavin mononucleotide (FMN) oxidoreductase (Red), BLuc-Red, for the express diagnostics of athletes' stress levels before and after physical exertion. The volunteers who participated in the study were grouped as freestyle wrestlers and students who adapted to different levels of physical activities. Under physical exertion modelling conditions, the influence of participant saliva on BLuc-Red catalyzed light emission was investigated. Results showed a significant increase in residual luminescence (Iexp , mean maximum bioluminescence intensity of the experimental measurement (Iexp ); Ic , luminescence intensity in control; Iexp /Ic , %) values for participants in the wrestler group while a decrease in the student group (P < 0.05). Such contrasting residual luminescence values in both groups were found to be dependent on the catalase activity of saliva. The proposed bioluminescence assay can be utilized as a potential nonspecific biosensing tool for determining the physical state of athletes under high loads.
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Affiliation(s)
- Valentina A Kratasyuk
- Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Svobodny prospect 79, Krasnoyarsk, Russia.,Federal Research Center 'Krasnoyarsk Science Center SB RAS', Institute of Biophysics SB RAS, Akademgorodok 50/50, Krasnoyarsk, Russia
| | - Lyudmila V Stepanova
- Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Svobodny prospect 79, Krasnoyarsk, Russia
| | - Rajeev Ranjan
- Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Svobodny prospect 79, Krasnoyarsk, Russia
| | - Oleg S Sutormin
- Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Svobodny prospect 79, Krasnoyarsk, Russia
| | - Shubhra Pande
- Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Svobodny prospect 79, Krasnoyarsk, Russia.,Krasnoyarsk State Medical University named after professor V.F.Voyno-Yasenetsky of the Ministry of Health of the Russian Federation, Av. Partizan Zheleznyak 1, Krasnoyarsk, Russia
| | - Galina V Zhukova
- Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Svobodny prospect 79, Krasnoyarsk, Russia
| | - Olga M Miller
- Krasnoyarsk Maternity and Childhood Protection Center, Kirenskogo Street 2a, Krasnoyarsk, Russia
| | - Natalya V Maznyak
- School of Non-Ferrous Metals and Materials Science, Siberian Federal University, Svobodny prospect 79, Krasnoyarsk, Russia
| | - Oksana A Kolenchukova
- Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Svobodny prospect 79, Krasnoyarsk, Russia.,Scientific Research Institute of Medical Problems of the North, Av. Partizan Zheleznyak 3g, Krasnoyarsk, Russia
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