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For: Xue T, Zhang F, Zhang C, Chen Y, Song Y, Golby AJ, Makris N, Rathi Y, Cai W, O'Donnell LJ. Superficial white matter analysis: An efficient point-cloud-based deep learning framework with supervised contrastive learning for consistent tractography parcellation across populations and dMRI acquisitions. Med Image Anal 2023;85:102759. [PMID: 36706638 PMCID: PMC9975054 DOI: 10.1016/j.media.2023.102759] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2022] [Revised: 01/05/2023] [Accepted: 01/20/2023] [Indexed: 01/24/2023]
Number Cited by Other Article(s)
1
Li Y, Zhang W, Wu Y, Yin L, Zhu C, Chen Y, Cetin-Karayumak S, Cho KIK, Zekelman LR, Rushmore J, Rathi Y, Makris N, O'Donnell LJ, Zhang F. A diffusion MRI tractography atlas for concurrent white matter mapping across Eastern and Western populations. Sci Data 2024;11:787. [PMID: 39019877 DOI: 10.1038/s41597-024-03624-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2024] [Accepted: 07/08/2024] [Indexed: 07/19/2024]  Open
2
Zhang D, Zong F, Zhang Q, Yue Y, Zhang F, Zhao K, Wang D, Wang P, Zhang X, Liu Y. Anat-SFSeg: Anatomically-guided superficial fiber segmentation with point-cloud deep learning. Med Image Anal 2024;95:103165. [PMID: 38608510 DOI: 10.1016/j.media.2024.103165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2023] [Revised: 03/28/2024] [Accepted: 04/05/2024] [Indexed: 04/14/2024]
3
Xue T, Zhang F, Zekelman LR, Zhang C, Chen Y, Cetin-Karayumak S, Pieper S, Wells WM, Rathi Y, Makris N, Cai W, O'Donnell LJ. TractoSCR: a novel supervised contrastive regression framework for prediction of neurocognitive measures using multi-site harmonized diffusion MRI tractography. Front Neurosci 2024;18:1411797. [PMID: 38988766 PMCID: PMC11233814 DOI: 10.3389/fnins.2024.1411797] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2024] [Accepted: 06/10/2024] [Indexed: 07/12/2024]  Open
4
Chen Y, Zekelman LR, Zhang C, Xue T, Song Y, Makris N, Rathi Y, Golby AJ, Cai W, Zhang F, O'Donnell LJ. TractGeoNet: A geometric deep learning framework for pointwise analysis of tract microstructure to predict language assessment performance. Med Image Anal 2024;94:103120. [PMID: 38458095 PMCID: PMC11016451 DOI: 10.1016/j.media.2024.103120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2023] [Revised: 11/30/2023] [Accepted: 02/21/2024] [Indexed: 03/10/2024]
5
Dritsas S, Chua KWD, Goh ZH, Simpson RE. Classification, registration and segmentation of ear canal impressions using convolutional neural networks. Med Image Anal 2024;94:103152. [PMID: 38531210 DOI: 10.1016/j.media.2024.103152] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Revised: 12/12/2023] [Accepted: 03/20/2024] [Indexed: 03/28/2024]
6
Mendoza C, Román C, Mangin JF, Hernández C, Guevara P. Short fiber bundle filtering and test-retest reproducibility of the Superficial White Matter. Front Neurosci 2024;18:1394681. [PMID: 38737100 PMCID: PMC11088237 DOI: 10.3389/fnins.2024.1394681] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2024] [Accepted: 04/08/2024] [Indexed: 05/14/2024]  Open
7
Zhang Q, Wang H, Shi Y, Li W. White matter biomarker for predicting de novo Parkinson's disease using tract-based spatial statistics: a machine learning-based model. Quant Imaging Med Surg 2024;14:3086-3106. [PMID: 38617147 PMCID: PMC11007501 DOI: 10.21037/qims-23-1478] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2023] [Accepted: 03/07/2024] [Indexed: 04/16/2024]
8
Joshi A, Li H, Parikh NA, He L. A systematic review of automated methods to perform white matter tract segmentation. Front Neurosci 2024;18:1376570. [PMID: 38567281 PMCID: PMC10985163 DOI: 10.3389/fnins.2024.1376570] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2024] [Accepted: 03/04/2024] [Indexed: 04/04/2024]  Open
9
Li S, Zhang W, Yao S, He J, Zhu C, Gao J, Xue T, Xie G, Chen Y, Torio EF, Feng Y, Bastos DC, Rathi Y, Makris N, Kikinis R, Bi WL, Golby AJ, O'Donnell LJ, Zhang F. Tractography-based automated identification of the retinogeniculate visual pathway with novel microstructure-informed supervised contrastive learning. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.01.03.574115. [PMID: 38260369 PMCID: PMC10802389 DOI: 10.1101/2024.01.03.574115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/24/2024]
10
Aja-Fernández S, Martín-Martín C, Planchuelo-Gómez Á, Faiyaz A, Uddin MN, Schifitto G, Tiwari A, Shigwan SJ, Kumar Singh R, Zheng T, Cao Z, Wu D, Blumberg SB, Sen S, Goodwin-Allcock T, Slator PJ, Yigit Avci M, Li Z, Bilgic B, Tian Q, Wang X, Tang Z, Cabezas M, Rauland A, Merhof D, Manzano Maria R, Campos VP, Santini T, da Costa Vieira MA, HashemizadehKolowri S, DiBella E, Peng C, Shen Z, Chen Z, Ullah I, Mani M, Abdolmotalleby H, Eckstrom S, Baete SH, Filipiak P, Dong T, Fan Q, de Luis-García R, Tristán-Vega A, Pieciak T. Validation of deep learning techniques for quality augmentation in diffusion MRI for clinical studies. Neuroimage Clin 2023;39:103483. [PMID: 37572514 PMCID: PMC10440596 DOI: 10.1016/j.nicl.2023.103483] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Revised: 07/24/2023] [Accepted: 07/25/2023] [Indexed: 08/14/2023]
11
Ghazi N, Aarabi MH, Soltanian-Zadeh H. Deep Learning Methods for Identification of White Matter Fiber Tracts: Review of State-of-the-Art and Future Prospective. Neuroinformatics 2023;21:517-548. [PMID: 37328715 DOI: 10.1007/s12021-023-09636-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/20/2023] [Indexed: 06/18/2023]
12
Chen Y, Zhang C, Xue T, Song Y, Makris N, Rathi Y, Cai W, Zhang F, O'Donnell LJ. Deep fiber clustering: Anatomically informed fiber clustering with self-supervised deep learning for fast and effective tractography parcellation. Neuroimage 2023;273:120086. [PMID: 37019346 PMCID: PMC10958986 DOI: 10.1016/j.neuroimage.2023.120086] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Accepted: 04/02/2023] [Indexed: 04/05/2023]  Open
13
Jin R, Cai Y, Zhang S, Yang T, Feng H, Jiang H, Zhang X, Hu Y, Liu J. Computational approaches for the reconstruction of optic nerve fibers along the visual pathway from medical images: a comprehensive review. Front Neurosci 2023;17:1191999. [PMID: 37304011 PMCID: PMC10250625 DOI: 10.3389/fnins.2023.1191999] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Accepted: 05/09/2023] [Indexed: 06/13/2023]  Open
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