1
|
Morozova IA, Guranda DT, Panin NV, Švedas VK. Specificity of Penicillin Acylases in Deprotection of N-Benzyloxycarbonyl Derivatives of Amino Acids. Acta Naturae 2023; 15:69-73. [PMID: 37153508 PMCID: PMC10154775 DOI: 10.32607/actanaturae.13703] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2022] [Accepted: 02/16/2023] [Indexed: 05/09/2023] Open
Abstract
Changes in the structure of the N-acyl group in N-acylated amino acid derivatives significantly affect both the recognition and activity of penicillin acylases on this series of substrates. However, penicillin acylases from both Alcaligenes faecalis and Escherichia coli are capable of removing the N-benzyloxycarbonyl protecting group in amino acid derivatives under mild conditions without the use of toxic reagents. Efficiency in using penicillin acylases in preparative organic synthesis can be improved by utilizing modern rational enzyme design methods.
Collapse
Affiliation(s)
- I. A. Morozova
- Lomonosov Moscow State University, Belozersky Institute of Physicochemical Biology, Moscow, 119234 Russian Federation
| | - D. T. Guranda
- Lomonosov Moscow State University, Belozersky Institute of Physicochemical Biology, Moscow, 119234 Russian Federation
| | - N. V. Panin
- Lomonosov Moscow State University, Belozersky Institute of Physicochemical Biology, Moscow, 119234 Russian Federation
- Lomonosov Moscow State University, Research Computing Center, Moscow, 119234 Russian Federation
| | - V. K. Švedas
- Lomonosov Moscow State University, Belozersky Institute of Physicochemical Biology, Moscow, 119234 Russian Federation
- Lomonosov Moscow State University, Research Computing Center, Moscow, 119234 Russian Federation
- Lomonosov Moscow State University, Faculty of Bioengineering and Bioinformatics, Moscow, 119234 Russian Federation
| |
Collapse
|
2
|
Fernandez-Lopez L, Roda S, Gonzalez-Alfonso JL, Plou FJ, Guallar V, Ferrer M. Design and Characterization of In-One Protease-Esterase PluriZyme. Int J Mol Sci 2022; 23:13337. [PMID: 36362119 PMCID: PMC9655419 DOI: 10.3390/ijms232113337] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2022] [Revised: 10/25/2022] [Accepted: 10/29/2022] [Indexed: 10/14/2023] Open
Abstract
Proteases are abundant in prokaryotic genomes (~10 per genome), but their recovery encounters expression problems, as only 1% can be produced at high levels; this value differs from that of similarly abundant esterases (1-15 per genome), 50% of which can be expressed at good levels. Here, we design a catalytically efficient artificial protease that can be easily produced. The PluriZyme EH1AB1 with two active sites supporting the esterase activity was employed. A Leu24Cys mutation in EH1AB1, remodelled one of the esterase sites into a proteolytic one through the incorporation of a catalytic dyad (Cys24 and His214). The resulting artificial enzyme, EH1AB1C, efficiently hydrolysed (azo)casein at pH 6.5-8.0 and 60-70 °C. The presence of both esterase and protease activities in the same scaffold allowed the one-pot cascade synthesis (55.0 ± 0.6% conversion, 24 h) of L-histidine methyl ester from the dipeptide L-carnosine in the presence of methanol. This study demonstrates that active sites supporting proteolytic activity can be artificially introduced into an esterase scaffold to design easy-to-produce in-one protease-esterase PluriZymes for cascade reactions, namely, the synthesis of amino acid esters from dipeptides. It is also possible to design artificial proteases with good production yields, in contrast to natural proteases that are difficult to express.
Collapse
Affiliation(s)
| | - Sergi Roda
- Department of Life Sciences, Barcelona Supercomputing Center (BSC), 08034 Barcelona, Spain
| | | | | | - Víctor Guallar
- Department of Life Sciences, Barcelona Supercomputing Center (BSC), 08034 Barcelona, Spain
- Institution for Research and Advanced Studies (ICREA), 08010 Barcelona, Spain
| | - Manuel Ferrer
- Department of Applied Biocatalysis, ICP, CSIC, 28049 Madrid, Spain
| |
Collapse
|
3
|
Thimmegowda NR, Rangappa KS, Jagadeesha GS, Mantelingu K. Microwave-Assisted, Metal-Free, Chemoselective N-Formylation of Amines using 2-Formyl-3-methyl-1H-imidazol-3-ium Iodide and In Situ Synthesis of Benzimidazole and Isocyanides. SYNOPEN 2022. [DOI: 10.1055/s-0041-1737605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022] Open
Abstract
AbstractAn efficient, environmentally benign, chemoselective, microwave-assisted N-formylation protocol of aromatic, aliphatic, alicyclic, benzylic amines, inactivated aromatic amines and sterically demanding heterocyclic amines using 2-formyl-1,3-dimethyl-1H-imidazol-3-ium iodide has been developed. This affords a series of N-substituted formamides with good to excellent yields (23 examples, 53–96% yield) and can be readily scaled. The methodology can be further extended to synthesize benzimidazole and isocyanide derivatives.
Collapse
|
4
|
Szepiński E, Martynow D, Szweda P, Milewska MJ, Milewski S. Voriconazole-Based Salts Are Active against Multidrug-Resistant Human Pathogenic Yeasts. Molecules 2019; 24:molecules24203635. [PMID: 31600925 PMCID: PMC6832385 DOI: 10.3390/molecules24203635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2019] [Revised: 10/03/2019] [Accepted: 10/06/2019] [Indexed: 11/16/2022] Open
Abstract
Voriconazole (VOR) hydrochloride is unequivocally converted into VOR lactates and valinates upon reaction with silver salts of organic acids. This study found that the anticandidal in vitro activity of these compounds was comparable or slightly better than that of VOR. The Candida albicans clinical isolate overexpressing CaCDR1/CaCDR2 genes, highly resistant to VOR, was apparently more susceptible to VOR salts. On the other hand, the susceptibility of another C. albicans clinical isolate (demonstrating multidrug resistance due to the overexpression of CaMDR1) to VOR salts was comparable to that to VOR. Comparative studies on the influence of VOR and its salts on Rhodamine 6G efflux from susceptible and multidrug-resistant C. albicans cells revealed that VOR salts are poorer substrates for the CaCdr1p drug efflux pump than VOR.
Collapse
Affiliation(s)
- Emil Szepiński
- Department of Organic Chemistry, Gdańsk University of Technology, 11/12 G. Narutowicza Str., 80-233 Gdańsk, Poland.
| | - Dorota Martynow
- Department of Pharmaceutical Technology and Biochemistry, Gdańsk University of Technology, 11/12 G. Narutowicza Str., 80-233 Gdańsk, Poland.
| | - Piotr Szweda
- Department of Pharmaceutical Technology and Biochemistry, Gdańsk University of Technology, 11/12 G. Narutowicza Str., 80-233 Gdańsk, Poland.
| | - Maria J Milewska
- Department of Organic Chemistry, Gdańsk University of Technology, 11/12 G. Narutowicza Str., 80-233 Gdańsk, Poland.
| | - Sławomir Milewski
- Department of Pharmaceutical Technology and Biochemistry, Gdańsk University of Technology, 11/12 G. Narutowicza Str., 80-233 Gdańsk, Poland.
| |
Collapse
|
5
|
Density, sound velocity, viscosity, and refractive index of new morpholinium ionic liquids with amino acid-based anions: Effect of temperature, alkyl chain length, and anion. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.04.026] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
6
|
Osawa K, Tagaya H, Kondo SI. Induced Circular Dichroism of Achiral Cyclic Bisurea via Hydrogen Bonds with Chiral Carboxylates. J Org Chem 2019; 84:6623-6630. [DOI: 10.1021/acs.joc.9b00073] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Kohei Osawa
- Graduate School of Science and Engineering, Yamagata University, 4-3-16 Jonan, Yonezawa, Yamagata 992-8510, Japan
| | - Hideyuki Tagaya
- Graduate School of Science and Engineering, Yamagata University, 4-3-16 Jonan, Yonezawa, Yamagata 992-8510, Japan
| | - Shin-ichi Kondo
- Department of Chemistry, Faculty of Science, Yamagata University, 1-4-12 Kojirakawa-machi, Yamagata City, Yamagata 990-8560, Japan
| |
Collapse
|
7
|
Mäenpää H, Kanerva LT, Liljeblad A. Acylation of β-Amino Esters and Hydrolysis of β-Amido Esters: Candida antarctica
Lipase A as a Chemoselective Deprotection Catalyst. ChemCatChem 2016. [DOI: 10.1002/cctc.201501381] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Harri Mäenpää
- Institute of Biomedicine/Department of Pharmacology; Drug Development and Therapeutics; University of Turku; FI-20014 Finland
| | - Liisa T. Kanerva
- Institute of Biomedicine/Department of Pharmacology; Drug Development and Therapeutics; University of Turku; FI-20014 Finland
| | - Arto Liljeblad
- Institute of Biomedicine/Department of Pharmacology; Drug Development and Therapeutics; University of Turku; FI-20014 Finland
| |
Collapse
|
8
|
Moritz Bauer J, Peters R. Catalytic asymmetric [3,3]-rearrangements of allylic acetimidates. Catal Sci Technol 2015. [DOI: 10.1039/c4cy01749h] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The rearrangement of non-halogenated acetimidates in combination with an enzymatic amide hydrolysis is attractive to get almost enantiopure allylic amines.
Collapse
Affiliation(s)
- J. Moritz Bauer
- Institut für Organische Chemie
- Universität Stuttgart
- D-70569 Stuttgart
- Germany
| | - René Peters
- Institut für Organische Chemie
- Universität Stuttgart
- D-70569 Stuttgart
- Germany
| |
Collapse
|
9
|
Sharma A, Chaurasia SP, Dalai AK. Non-selective hydrolysis of tuna fish oil for producing free fatty acids containing docosahexaenoic acid. CAN J CHEM ENG 2013. [DOI: 10.1002/cjce.21851] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Aditi Sharma
- Chemical Engineering Department; Banasthali University; P.O. 304022 Jaipur Rajasthan India
- Department of Chemical and Biological Engineering; College of Engineering, University of Saskatchewan; 57 Campus Drive Saskatoon SK, Canada S7N 5A9
| | - Satyendra P. Chaurasia
- Chemical Engineering Department; Malaviya National Institute of Technology; Jaipur Rajasthan 302 017 India
| | - Ajay K. Dalai
- Department of Chemical and Biological Engineering; College of Engineering, University of Saskatchewan; 57 Campus Drive Saskatoon SK, Canada S7N 5A9
| |
Collapse
|
10
|
Palacio CM, Sabaini MB, Iribarren AM, Iglesias LE. An efficient and mild access to N-acetyl protected purine nucleosides based on a chemoselective enzymatic hydrolysis. J Biotechnol 2013; 165:99-101. [DOI: 10.1016/j.jbiotec.2013.03.004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2012] [Revised: 03/01/2013] [Accepted: 03/06/2013] [Indexed: 10/27/2022]
|
11
|
Lipase from Pseudomonas stutzeri: Purification, homology modelling and rational explanation of the substrate binding mode. ACTA ACUST UNITED AC 2013. [DOI: 10.1016/j.molcatb.2012.11.005] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
12
|
Torrelo G, Jin J, Hanefeld U. Hydroxynitrile Lyases Do Not Catalyse the Promiscuous Addition of Cyanide to Imines. ChemCatChem 2013. [DOI: 10.1002/cctc.201200804] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
|
13
|
Chu LN, Nanduri VB, Patel RN, Goswami A. Enzymes for the removal of N-carbobenzyloxy protecting groups from N-carbobenzyloxy-d- and l-amino acids. ACTA ACUST UNITED AC 2013. [DOI: 10.1016/j.molcatb.2012.08.009] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
|
14
|
Orth ES, Medeiros M, Souza BS, Caon NB, Kirby AJ, Nome F. Reactions of substituted aspirins with amino acids. J PHYS ORG CHEM 2012. [DOI: 10.1002/poc.2971] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Elisa S. Orth
- INCT-Catálise, Departamento de Química; Universidade Federal de Santa Catarina; Florianópolis; SC; 88040-900; Brazil
| | - Michelle Medeiros
- INCT-Catálise, Departamento de Química; Universidade Federal de Santa Catarina; Florianópolis; SC; 88040-900; Brazil
| | - Bruno S. Souza
- INCT-Catálise, Departamento de Química; Universidade Federal de Santa Catarina; Florianópolis; SC; 88040-900; Brazil
| | - Natália B. Caon
- INCT-Catálise, Departamento de Química; Universidade Federal de Santa Catarina; Florianópolis; SC; 88040-900; Brazil
| | | | - Faruk Nome
- INCT-Catálise, Departamento de Química; Universidade Federal de Santa Catarina; Florianópolis; SC; 88040-900; Brazil
| |
Collapse
|
15
|
Gong X, Su E, Wang P, Wei D. Alcaligenes faecalis penicillin G acylase-catalyzed enantioselective acylation of dl-phenylalanine and derivatives in aqueous medium. Tetrahedron Lett 2011. [DOI: 10.1016/j.tetlet.2011.08.056] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
|
16
|
Fröhlich P, Albert K, Bertau M. Formate dehydrogenase - a biocatalyst with novel applications in organic chemistry. Org Biomol Chem 2011; 9:7941-50. [DOI: 10.1039/c1ob06064c] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
17
|
Rodrigues RC, Fernandez-Lafuente R. Lipase from Rhizomucor miehei as an industrial biocatalyst in chemical process. ACTA ACUST UNITED AC 2010. [DOI: 10.1016/j.molcatb.2010.02.003] [Citation(s) in RCA: 171] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
|
18
|
Białecka-Florjańczyk E, Majewska E. Chemoselective Hydrolysis of Ester Bonds in the Presence of Baker's Yeast. SYNTHETIC COMMUN 2010. [DOI: 10.1080/00397910903068196] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
| | - Ewa Majewska
- a Warsaw University of Life Sciences, Institute of Chemistry , Warsaw, Poland
| |
Collapse
|
19
|
Busto E, Gotor-Fernández V, Gotor V. Hydrolases: catalytically promiscuous enzymes for non-conventional reactions in organic synthesis. Chem Soc Rev 2010; 39:4504-23. [DOI: 10.1039/c003811c] [Citation(s) in RCA: 246] [Impact Index Per Article: 17.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
20
|
Liljeblad A, Kallio P, Vainio M, Niemi J, Kanerva LT. Formation and hydrolysis of amide bonds by lipase A from Candida antarctica; exceptional features. Org Biomol Chem 2010; 8:886-95. [PMID: 20135048 DOI: 10.1039/b920939p] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Affiliation(s)
- Arto Liljeblad
- Institute of Biomedicine, Pharmacology, Drug Development and Therapeutics/Laboratory of Synthetic Drug Chemistry and Department of Chemistry, University of Turku, Lemminkäisenkatu 5 C, FIN-20520, Turku, Finland.
| | | | | | | | | |
Collapse
|