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Tang NC, Su JC, Shmidov Y, Kelly G, Deshpande S, Sirohi P, Peterson N, Chilkoti A. Synthetic intrinsically disordered protein fusion tags that enhance protein solubility. Nat Commun 2024; 15:3727. [PMID: 38697982 PMCID: PMC11066018 DOI: 10.1038/s41467-024-47519-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Accepted: 04/03/2024] [Indexed: 05/05/2024] Open
Abstract
We report the de novo design of small (<20 kDa) and highly soluble synthetic intrinsically disordered proteins (SynIDPs) that confer solubility to a fusion partner with minimal effect on the activity of the fused protein. To identify highly soluble SynIDPs, we create a pooled gene-library utilizing a one-pot gene synthesis technology to create a large library of repetitive genes that encode SynIDPs. We identify three small (<20 kDa) and highly soluble SynIDPs from this gene library that lack secondary structure and have high solvation. Recombinant fusion of these SynIDPs to three known inclusion body forming proteins rescue their soluble expression and do not impede the activity of the fusion partner, thereby eliminating the need for removal of the SynIDP tag. These findings highlight the utility of SynIDPs as solubility tags, as they promote the soluble expression of proteins in E. coli and are small, unstructured proteins that minimally interfere with the biological activity of the fused protein.
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Affiliation(s)
- Nicholas C Tang
- Department of Biomedical Engineering, Duke University, Durham, NC, 27708, USA
| | - Jonathan C Su
- Department of Biomedical Engineering, Duke University, Durham, NC, 27708, USA
| | - Yulia Shmidov
- Department of Biomedical Engineering, Duke University, Durham, NC, 27708, USA
| | - Garrett Kelly
- Department of Biomedical Engineering, Duke University, Durham, NC, 27708, USA
| | - Sonal Deshpande
- Department of Biomedical Engineering, Duke University, Durham, NC, 27708, USA
| | - Parul Sirohi
- Department of Biomedical Engineering, Duke University, Durham, NC, 27708, USA
| | - Nikhil Peterson
- Department of Biomedical Engineering, Duke University, Durham, NC, 27708, USA
| | - Ashutosh Chilkoti
- Department of Biomedical Engineering, Duke University, Durham, NC, 27708, USA.
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Prause A, Hechenbichler M, von Lospichl B, Feoktystov A, Schweins R, Mahmoudi N, Laschewsky A, Gradzielski M. Aggregation Behavior of Nonsymmetrically End-Capped Thermoresponsive Block Copolymers in Aqueous Solutions: Between Polymer Coils and Micellar States. Macromolecules 2022. [DOI: 10.1021/acs.macromol.2c00878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Albert Prause
- FG Physical Chemistry/Molecular Material Science, Technische Universität Berlin, Straße des 17. Juni 135, 10623 Berlin, Germany
| | - Michelle Hechenbichler
- Department of Chemistry, Universität Potsdam, Karl-Liebknecht-Straße 24−25, 14476 Potsdam, Germany
| | - Benjamin von Lospichl
- FG Physical Chemistry/Molecular Material Science, Technische Universität Berlin, Straße des 17. Juni 135, 10623 Berlin, Germany
| | - Artem Feoktystov
- Jülich Centre for Neutron Science (JCNS) at Heinz Maier-Leibnitz Zentrum (MLZ), Forschungszentrum Jülich GmbH, Lichtenbergstraße 1, 85748 Garching, Germany
| | - Ralf Schweins
- Institut Laue−Langevin, DS/LSS, 71 Avenue des Martyrs, CS 20 156, F-38042 Grenoble Cedex 9, France
| | - Najet Mahmoudi
- ISIS Facility, STFC, Rutherford Appleton Laboratory, Harwell Campus, Didcot OX11 0QX, U.K
| | - André Laschewsky
- Department of Chemistry, Universität Potsdam, Karl-Liebknecht-Straße 24−25, 14476 Potsdam, Germany
- Fraunhofer Institute of Applied Polymer Research IAP, Geiselbergstraße 69, 14476 Potsdam, Germany
| | - Michael Gradzielski
- FG Physical Chemistry/Molecular Material Science, Technische Universität Berlin, Straße des 17. Juni 135, 10623 Berlin, Germany
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Spiering VJ, Prause A, Noirez L, Appavou MS, Gradzielski M. Structural Characterization of Nonionic Surfactant Micelles with CO 2/Ethylene Oxide Head Groups and Their Temperature Dependence. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2021; 37:13235-13243. [PMID: 34735164 DOI: 10.1021/acs.langmuir.1c01737] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Using CO2 as a resource in the production of materials is a viable alternative to conventional, petroleum-based raw materials and therefore offers great potential for more sustainable chemistry. This study presents a detailed structural characterization of aggregates of nonionic dodecyl surfactants with different amounts of CO2 substituting ethylene oxide (EO) in the head group. The micellar structure was characterized as a function of concentration and temperature by dynamic and static light scattering and, in further detail, by small-angle neutron scattering (SANS). The influence of the CO2 unit in the hydrophilic EO group is systematically compared to the incorporation of propylene oxide (PO) and propiolactone (PL). The surfactants with carbonate groups in their head groups form ellipsoidal micelles in an aqueous solution similar to conventional nonionic surfactants, becoming bigger with increasing CO2 content. In contrast, the incorporation of PO units hardly alters the behavior, while the incorporation of a PL unit has an effect comparable to the CO2 unit. The analysis of the SANS data shows decreasing hydration with increasing CO2 and PL content. By increasing the temperature, a typical sphere-rod transition is observed, where CO2 surfactants show a much higher elongation with increasing temperature, which is correlated with the reduced cloud point and a lower extent of head group hydration. Our findings demonstrate that CO2-containing surface-active compounds are an interesting, potentially "greener" alternative to conventional nonionic surfactants.
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Affiliation(s)
- Vivian J Spiering
- Stranski-Laboratorium für Physikalische und Theoretische Chemie, Institut für Chemie, Technische Universität Berlin, Straße des 17. Juni 124, Berlin D-10623, Germany
| | - Albert Prause
- Stranski-Laboratorium für Physikalische und Theoretische Chemie, Institut für Chemie, Technische Universität Berlin, Straße des 17. Juni 124, Berlin D-10623, Germany
| | - Laurence Noirez
- Laboratoire Léon Brillouin (CEA-CNRS), Université Paris-Saclay, C.E.-Saclay, Gif sur Yvette Cedex 91191, France
| | - Marie-Sousai Appavou
- Forschungszentrum Jülich GmbH Jülich Centre for Neutron Science (JCNS) at Heinz Maier-Leibnitz Zentrum (MLZ), Lichtenbergerstr. 1, Garching D-85747, Germany
| | - Michael Gradzielski
- Stranski-Laboratorium für Physikalische und Theoretische Chemie, Institut für Chemie, Technische Universität Berlin, Straße des 17. Juni 124, Berlin D-10623, Germany
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López-Barrón CR, Vargas-Lara F, Kang S. Single-Chain Conformation of Poly(α-olefins) in Dilute Solutions at the Crossover between Linear and Bottlebrush Architectures. Macromolecules 2021. [DOI: 10.1021/acs.macromol.1c00725] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
| | | | - Shuhui Kang
- ExxonMobil Chemical Company, Baytown, Texas 77520, United States
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Photopolymerizable pullulan: Synthesis, self-assembly and inkjet printing. J Colloid Interface Sci 2021; 592:430-439. [PMID: 33706154 DOI: 10.1016/j.jcis.2021.02.074] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2021] [Revised: 02/08/2021] [Accepted: 02/16/2021] [Indexed: 12/18/2022]
Abstract
HYPOTHESIS Pullulan, an exopolysaccharide consisting of maltotriose repeating units, has recently found many applications in different fields, such as food, packaging, cosmetics and pharmaceuticals. The introduction of photo-crosslinkable methacrylic units potentially allows to use pullulan derivative in inkjet 3D printing. EXPERIMENTS Pullulan was functionalized with methacrylic groups and the derivative was characterized by NMR, FT-IR and Raman spectroscopy. Water dispersions were thoroughly investigated by optical microscopy, SAXS and rheology to evaluate the self-assembly properties and they were used as photo-crosslinkable inks in a 3D printer, also in comparison with pristine pullulan. The structural and mechanical properties of the obtained films were studied by Atomic Force Microscopy and tensile strength tests. FINDINGS The introduction of methacrylic groups moderately affects the self-assembly of the polymer in water, resulting in a slight increase of the gyration radius of the polymer coils and in a small decrease of the viscosity, retaining the typical shear-thinning behavior of concentrated polysaccharides in water. The structural and mechanical properties of the 3D printed films are much more affected, showing the presence of sub-micrometric phase segregated domains which are further separated by the cross-linking. As a result, the deformability of the materials is improved, with a lower tensile strength.
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Srivastava A, Zhao Y, Meyerhofer J, Jia L, Foster MD. Design of Interfacial Crowding for Elastomeric Reinforcement with Nanocrystals. ACS APPLIED MATERIALS & INTERFACES 2021; 13:10349-10358. [PMID: 33600166 DOI: 10.1021/acsami.0c18771] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Design of the crowding of chains tethered at the faces of β-sheet nanocrystals self-assembled from β-alanine trimers grafted on polyisobutylene (PIB) rubber tailors nanocrystal size and thus the elastic matrix morphology, thereby altering the material's macroscopic elastic properties. Results from transmission electron microscopy, small-angle X-ray scattering, and small-angle neutron scattering characterizations of the morphology demonstrate that increasing the density of chain tethering at the crystalline nanodomain/matrix interface can sharply limit the nanodomain growth in the direction of hydrogen bonding in the crystals. The nanocrystal size, in turn, impacts the gradient in chain stretching away from the crystal surface and the macroscopic volume fraction of unperturbed chains. Nanocomposite mechanical and dynamic mechanical properties at low degrees of deformation are related to the structural hierarchy resulting from the control of interfacial tethering density.
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Affiliation(s)
- Aarushi Srivastava
- The School of Polymer Science and Polymer Engineering, The University of Akron, Akron, Ohio 44325-3909, United States
| | - Yihong Zhao
- The School of Polymer Science and Polymer Engineering, The University of Akron, Akron, Ohio 44325-3909, United States
| | - John Meyerhofer
- The School of Polymer Science and Polymer Engineering, The University of Akron, Akron, Ohio 44325-3909, United States
| | - Li Jia
- The School of Polymer Science and Polymer Engineering, The University of Akron, Akron, Ohio 44325-3909, United States
| | - Mark D Foster
- The School of Polymer Science and Polymer Engineering, The University of Akron, Akron, Ohio 44325-3909, United States
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Hallett JE, Grillo I, Smith GN. A Neutron Scattering Study of the Structure of Poly(dimethylsiloxane)-Stabilized Poly(methyl methacrylate) (PDMS-PMMA) Latexes in Dodecane. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2020; 36:2071-2081. [PMID: 32008323 DOI: 10.1021/acs.langmuir.9b03911] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Hard-sphere particles in nonpolar solvents are an essential tool for colloid scientists. Sterically stabilized poly(methyl methacrylate) (PMMA) particles have long been used as the exemplary hard-sphere system. However, neither the particles themselves nor the poly(12-hydroxystearic acid) (PHSA) stabilizer necessary to prevent aggregation in nonpolar solvents are commercially available. To counter this, several alternatives have been proposed. In recent years, there has been an increased interest in poly(dimethylsiloxane) (PDMS) stabilizers as a commercially available alternative to PHSA, yet the structure of particles made in this way is not as well understood as those produced using PHSA. In this work, we employ small-angle neutron scattering to determine the internal structure of PDMS-stabilized PMMA particles, synthesized with and without an additional crosslinking agent. We report data consistent with a homogeneous PMMA core with a linearly decaying PDMS shell. The thickness of the shell was in excess of 50 nm, thicker than the PHSA layer typically used to stabilize PMMA but consistent with reports of the layer thickness for similar molecular weight PDMS at planar surfaces. We also show that the amount of the hydrogenous material in the particle core of the crosslinked particles notably exceeds the amount of added ethylene glycol dimethacrylate crosslinker, suggesting some entrapment of the PDMS stabilizer in the PMMA matrix.
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Affiliation(s)
- James E Hallett
- H. H. Wills Physics Laboratory, University of Bristol, Tyndall Avenue, Bristol BS8 1TL, U.K
| | - Isabelle Grillo
- Institut Laue-Langevin, 71 Avenue des Martyrs, 38042 Grenoble Cedex 9, France
| | - Gregory N Smith
- Department of Chemistry, University of Sheffield, Brook Hill, Sheffield, South Yorkshire S3 7HF, U.K
- Niels Bohr Institute, H. C. Ørsted Institute, University of Copenhagen, Universitetsparken 5, 2100 Copenhagen, Denmark
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