Synthesis, characterization and computational studies of semicarbazide derivative

In vitro and in vivo evaluation of the antimicrobial, antioxidant, cytotoxic, hemolytic activities and in silico POM/DFT/DNA-binding and pharmacokinetic analyses of new sulfonamide bearing thiazolidin-4-ones

In this work, Schiff bases and Thiazolidin-4-ones, were synthesized using Sonication and Microwave techniques, respectively. The Schiff base derivatives (3a-b) were synthesized via the reaction of Sulfathiazole (1) with benzaldehyde derivatives (2a-b), followed by the synthesis of 4-thiazoledinone (4a-b) derivatives by cyclizing the synthesized Schiff bases through thioglycholic acid. All the synthesized compounds were characterized by spectroscopic techniques such as FT IR, NMR and HRMS. The synthesized compounds were tested for their in vitro antimicrobial and antioxidant and in vivo cytotoxicity and hemolysis ability. The synthesized compounds displayed better antimicrobial and antioxidant activity and low toxicity in comparison to reference drugs and negative controls, respectively. The hemolysis test revealed the compounds exhibit lower hemolytic effects and hemolytic values are comparatively low and the safety of compounds is in comparison with standard drugs. Theoretical calculations were carried out by using the molecular operating environment (MOE) and Gaussian computing software and observations were in good agreement with the in vitro and in vivo biological activities. Petra/Osiris/Molinspiration (POM) results indicate the presence of three combined antibacterial, antiviral and antitumor pharmacophore sites. The molecular docking revealed the significant binding affinities and non-bonding interactions between the compounds and Erwinia Chrysanthemi (PDB ID: 1SHK). The molecular dynamics simulation under in silico physiological conditions revealed a stable conformation and binding pattern in a stimulating environment. HighlightsNew series of Thaiazolidin-4-one derivatives have been synthesized.Sonication and microwave techniques are used.Antimicrobial, Antioxidant, cytotoxicity, and hemolysis activities were observed for all synthesized compounds.Molecular Docking and DFT/POM analyses have been predicted.Communicated by Ramaswamy H. Sarma.

Modeling the structure and reactivity landscapes of a pyrazole-ammonium ionic derivative using wavefunction-dependent characteristics and screening for potential anti-inflammatory activity

Spectroscopic investigations of 1-phenyl -2,3-dimethyl-5-oxo-1,2-dihydro-1H-pyrazol-4-ammonium 2[(2-carboxyphenyl) disulfanyl]benzoate (PACB) reported experimentally and theoretically. NH-O interaction is observed and there is a very large downshift for NH-O stretching frequency. Reactive sites are identified from the chemical and electronic properties. For PACB the maximum repulsion was around H33, H55 and H57 atom. LOL shows red regions between C-C and blue around C atoms are surrounded by a delocalized electron cloud. The red ring is a hallmark of electron density depletion from the NCI plot due to electrostatic repulsion and its existences suggests that coordination sphere for PACB is minimally strained around the central ion. Atomic contact energy values and high score of the docking results obtained propose that, PACB may have inhibitory properties and have a significant function in pharmacological chemistry. Molecular dynamics simulation was performed to validate the stability of the title compound with the Bovine thrombin-activatable fibrinolysis inhibitor protein.Communicated by Ramaswamy H. Sarma.

Identification of 4-acrylamido-N-(pyridazin-3-yl)benzamide as anti-COVID-19 compound: a DFTB, molecular docking, and molecular dynamics study

Omicron is one of the variants of COVID-19 and continuing member of a pandemic. There are several types of vaccines that were developed around the globe to fight against the virus. However, the world is suffering to find suitable drug candidates for the virus. The main protease (Mpro) enzyme of the virus is the best target for finding drug molecules because of its involvement in viral infection and protein synthesis. ZINC-15 is a database of 750 million commercially available compounds. We find 125 compounds having two aromatic rings and amide groups for non-covalent interactions with active site amino acids and functional groups with the capability to bind -SH group of C145 of Mpro through covalent bonding by a nucleophilic addition reaction. The lead compound (Z144) was identified using molecular docking. The non-covalent interactions (NCI) calculations show the interactions between amino acids present in the active site of the protein and the lead molecules are attractive in nature. The density functional-based tight-binding (DFTB) study of the lead compound with amino acids in the active site indicates that Q190 and Q193 play a very critical role in stabilization. The Michael addition of the acrylamide group of the lead molecule at β-position is facile because the low energy lowest unoccupied molecular orbital (LUMO) is concentrated on the group. From molecular dynamics during 100 ns, it has come to light that strong non-covalent interactions are key for the stability of the lead inside the protein and such binding can fold the protein. The free energy for this interaction is -42.72 kcal mol-1 which was obtained from MM-GB/SA calculations.

Corrosion inhibition relevance of semicarbazides: electronic structure, reactivity and coordination chemistry

Semicarbazide (OC(NH2)(N2H3)) and thiosemicarbazide (SC(NH2)(N2H3)) are well-known for their coordination complex formation ability. They contain nonbonding electrons in the form of heteroatoms (N, O and S) and π-electrons in the form of >C=O and >C=S through they strongly coordinate with the metal atoms and ions. Because of their association with this property, the Semicarbazide (SC), thiosemicarbazide (TSC) and their derivatives are widely used for different applications. They serve as building blocks for synthesis of various industrially and biologically useful chemicals. The SC, TSC and they derivatives are also serve as strong aqueous phase corrosion inhibitors. In the present reports, the coordination ability and corrosion protection tendency of Semicarbazide (SC), thiosemicarbazide (TSC) and their derivatives is surveyed and described. These compounds are widely used as inhibitors for different metals and alloys. Through their electron rich sites they adsorb on the metal surface and build corrosion protective film. Their adsorption mostly followed the Langmuir adsorption isotherm. Through their adsorption they increase the value of charge transfer resistance and decrease the value of corrosion current density. Computational studies adopted in the literature indicate that SC, TSC and their derivatives adsorb flatly and spontaneously using charge transfer mechanism.

Synthesis and characterization of nitrogen-rich polybenzoxazines for energetic applications

In a vision to develop new synthetic routes for the preparation of energetic materials, two new energetic benzoxazine monomers were synthesized via a two-step Mannich reaction process involving the incorporation of nitrogen–nitrogen bonds and explosophore groups (NO2) into the monomer backbone. The molecular structures of the synthesized monomers were confirmed by 1H NMR, Fourier transform infrared and elemental analysis techniques. The curing behavior and the degradation phenomena were evaluated by differential scanning calorimetry-thermogravimetric analysis analyses. The two monomers showed two distinct exothermic peaks related to the polymerization and degradation phases. The energetic performances were evaluated by determining the heat of combustion and formation using a bomb calorimeter, in an oxygen atmosphere. The results indicated that the 2,4 dinitrophenylhydrazine–based benzoxazine has better energetic properties than the phenylsemicarbazide-based benzoxazine, and the two developed polymers showed comparable performances with nitrocellulose and glycid azide polymer. Overall, this study has demonstrated that the ease of synthesis of the benzoxazine resins via Mannich reaction can be further extended to the energetic field and further research is undergoing to fully unravel the potential of these exceptional materials.

Novel Ag(I)-NHC complex: synthesis, in vitro cytotoxic activity, molecular docking, and quantum chemical studies

The importance of organometallic complexes in cancer biology has attracted attention in recent years. In this paper, we look for the in vitro cytotoxic capability of novel benzimidazole-based N-heterocyclic carbene (NHC) precursor (1) and its Ag(I)-NHC complex (2). For this purpose, these novel Ag(I)-NHC complex (2) was characterized by spectroscopic techniques (¹H, ¹³C{¹H} nuclear magnetic resonance (NMR), and Fourier-transform infrared spectroscopy (FT-IR)). Then, in vitro cytotoxic activities of NHC precursor (1) and Ag(I)-NHC complex (2) were investigated against MCF-7, MDA-MB-231 human breast, DU-145 prostate cancer cells, and L-929 healthy cells using MTT assay for 24, 48, and 72 h incubation times. Ag(I)-NHC complex (2) showed promising in vitro cytotoxic activity against all cell lines for three incubation times, with IC₅₀ values lower than 5 µM. It was also determined that (NHC) precursor (1) were lower in vitro cytotoxic activity than Ag(I)-NHC complex (2) against all cell lines. Selectivity indexes (SI_s) of Ag(I)-NHC complex (2) against cancer cells were found higher than 2 for 24 and 48 h incubation time. Besides, the electronic structure and spectroscopic data of the newly synthesized precursor and its Ag-complex have been supported by density functional theory (DFT) calculations and molecular docking analysis. After, the anticancer activity of these compounds has been discussed considering the results of the frontier molecular orbital analysis. We hope that the obtained results from the experiments and computational tools will bring a new perspective to cancer research in terms of supported by quantum chemical calculations.

Synthesis, spectral characterizations, molecular geometries and electronic properties of phenothiazine based organic dyes for dye-sensitized solar cells

A number of organic dye compounds is developed and used as dye-sensitized solar cells in order to produce cost-effective devices and enhance cell performance. In this aspect, phenothiazine based organic dye compounds such as (E)-3-(7-bromo-10-phenyl-10H-phenothiazine-3-yl) acrylic acid and (E)-3-(7-bromo-10-phenyl-10H-phenothiazine-3-yl)-2-cyanoacrylic acid have been synthesized. The synthesized dye compounds have been characterized through Fourier-transform infrared, Fourier-transform Raman and nuclear magnetic resonance spectroscopic method. The Ultraviolet–Visible spectra were recorded and electronic features were discussed with the theoretically calculated bands using time-dependent density functional theory. Frontier molecular orbital, natural bond orbital and non-linear optical properties have been calculated for these compounds using density functional theory. The photosensitization properties such as light harvesting efficiency and electron injection driving force (∆G inject) have also been discussed.