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Obaidullah AJ, Mahdi WA. Computational intelligence analysis on drug solubility using thermodynamics and interaction mechanism via models comparison and validation. Sci Rep 2024; 14:29556. [PMID: 39609611 PMCID: PMC11604952 DOI: 10.1038/s41598-024-80952-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2024] [Accepted: 11/22/2024] [Indexed: 11/30/2024] Open
Abstract
This study investigates the application of various regression models for predicting drug solubility in polymer and API-polymer interactions in complex datasets. Four models-Gaussian Process Regression (GPR), Support Vector Regression (SVR), Bayesian Ridge Regression (BRR), and Kernel Ridge Regression (KRR)-are evaluated. Preprocessing the dataset using the Z-score approach helped to detect outliers, further improving the accuracy and dependability of the analysis. Also, Fireworks Algorithm (FWA) is employed for hyper-parameter tuning in this work. The GPR model demonstrated superior performance, achieving the lowest MSE and MAE for both drug solubility and gamma predictions, with R2 scores of 0.9980 and 0.9950 for training and test data, respectively. The results of this study show the robustness of GPR in generating reliable and precise forecasts, thus providing a strong method for intricate regression tasks in pharmaceutical and other scientific fields. In addition, the Fireworks Algorithm (FWA) is presented as an optimization method, demonstrating its potential in improving the model's predictive abilities by effectively exploring and exploiting the search space. The results emphasize the significance of choosing suitable regression models and optimization techniques to attain dependable and superior predictive analytics.
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Affiliation(s)
- Ahmad J Obaidullah
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P.O. Box 2457, 11451, Riyadh, Saudi Arabia
| | - Wael A Mahdi
- Department of Pharmaceutics, College of Pharmacy, King Saud University, 11451, Riyadh, Saudi Arabia.
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Li M, Jiang W, Zhao S, Huang K, Liu D. Optimization of drug solubility inside the supercritical CO 2 system via numerical simulation based on artificial intelligence approach. Sci Rep 2024; 14:22779. [PMID: 39354064 PMCID: PMC11445554 DOI: 10.1038/s41598-024-74553-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2024] [Accepted: 09/26/2024] [Indexed: 10/03/2024] Open
Abstract
In this research paper, we explored the predictive capabilities of three different models of Polynomial Regression (PR), Extreme Gradient Boosting (XGB), and LASSO to estimate the density of supercritical carbon dioxide (SC-CO2) and the solubility of niflumic acid as functions of the input variables of temperature and pressure. The optimization of hyperparameters for these models is achieved using the innovative Barnacles Mating Optimizer (BMO) algorithm. For SC-CO2 density estimation, PR exhibits remarkable accuracy, showing an R-squared value of 0.99207 for data fitting. XGB performs admirably with an R2 of 0.92673, while LASSO model demonstrates good predictive ability, showing an R2 of 0.81917. Furthermore, we assess the models' performance in predicting the solubility of niflumic acid. PR exhibits excellent predictive capabilities with an R2 of 0.96949. XGB also delivers strong performance, yielding an R-squared score of 0.92961. LASSO performs well, achieving an R-squared score of 0.82094. The results indicated promising performance of machine learning models and optimizer in estimating drug solubility in supercritical CO2 as the solvent applicable for pharmaceutical industry.
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Affiliation(s)
- Meixiuli Li
- Department of Human Anatomy and Embryology, Pu Ai Medical School, Shaoyang University, Shaoyang, 422000, Hunan, China
| | - Wenyan Jiang
- The Second Affiliated Hospital of Shaoyang University, Shaoyang University, Shaoyang, 422000, Hunan, China.
| | - Shuang Zhao
- Department of Human Anatomy and Embryology, Pu Ai Medical School, Shaoyang University, Shaoyang, 422000, Hunan, China
| | - Kai Huang
- Department of Human Anatomy and Embryology, Pu Ai Medical School, Shaoyang University, Shaoyang, 422000, Hunan, China
| | - Dongxiu Liu
- Shashi Town Health Center, Shaodong, 422813, Hunan, China
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Sharma A, Park YR, Garg A, Lee BS. Deep Eutectic Solvents Enhancing Drug Solubility and Its Delivery. J Med Chem 2024; 67:14807-14819. [PMID: 39185938 DOI: 10.1021/acs.jmedchem.4c01550] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/27/2024]
Abstract
Deep eutectic solvents (DES) are environmentally friendly solvents with the potential to dissolve bioactive compounds without affecting their characteristics. DES has special qualities that can be customized to meet the unique characteristics of a biomolecule/active pharmaceutical ingredient (API) in accordance with various therapeutic needs, providing a reliable approach in opening the door for the creation of cutting-edge drug formulations by resolving solubility issues in pharmaceutics. This study outlines newly developing approaches to solve the problem of inefficient API extraction due to poor solubility. These emerging strategies also have the capacity to alter the chemical and physical stability of API, which triggers drug's shelf life and their possible health benefits. It is anticipated that the highlighted methods and processes will be developed to capitalize on the DES potential to improve drug solubility and delivery in the pharmaceutical sector.
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Affiliation(s)
- Anshu Sharma
- Department of Chemical Engineering, Kangwon National University, Chuncheon, Kangwon 24341, Republic of Korea
| | - Yea Rock Park
- Department of Chemical Engineering, Kangwon National University, Chuncheon, Kangwon 24341, Republic of Korea
| | - Aman Garg
- State Key Laboratory of Intelligent Manufacturing Equipment and Technology, School of Mechanical Science and Engineering, Huazhong University of Science and Technology, Wuhan 430074, China
- Department of Multidisciplinary Engineering, The NorthCap University, Gurugram, Haryana 122017, India
| | - Bong-Seop Lee
- Department of Chemical Engineering, Kangwon National University, Chuncheon, Kangwon 24341, Republic of Korea
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Neha, Aggarwal M, Soni A, Karmakar T. Polymorph-Specific Solubility Prediction of Urea Using Constant Chemical Potential Molecular Dynamics Simulations. J Phys Chem B 2024; 128:8477-8483. [PMID: 39186699 DOI: 10.1021/acs.jpcb.4c02027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/28/2024]
Abstract
Molecular dynamics simulations offer a robust approach to understanding the material properties within a system. Solubility is defined as the analytical composition of a saturated solution expressed as a proportion of designated solute in a designated solvent, according to IUPAC. It is a critical property of compounds and holds significance across numerous fields. Various computational techniques have been explored for determining solubility, including methods based on chemical potential determination, enhanced sampling simulation, and direct coexistence simulation, and lately, machine learning-based methods have shown promise. In this investigation, we have utilized Constant Chemical Potential Molecular Dynamics, a method rooted in direct coexistence simulation, to predict the solubility of urea polymorphs in aqueous solution. The primary purpose of using this method is to overcome the limitation of the direct simulation method by maintaining a constant chemical potential for a sufficiently long time. Urea is chosen as a prototypical system for our study, with a particular focus on three of its polymorphs. Our approach effectively discriminates between the polymorphs of urea based on their respective solubility values; polymorph III is found to have the highest solubility, followed by forms IV and I.
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Affiliation(s)
- Neha
- Department of Chemistry, Indian Institute of Technology, Delhi, New Delhi 110016, India
| | - Manya Aggarwal
- Department of Chemistry, Indian Institute of Technology, Delhi, New Delhi 110016, India
| | - Aashutosh Soni
- Department of Chemistry, Indian Institute of Technology, Delhi, New Delhi 110016, India
| | - Tarak Karmakar
- Department of Chemistry, Indian Institute of Technology, Delhi, New Delhi 110016, India
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Alamoudi JA. Recent advancements toward the incremsent of drug solubility using environmentally-friendly supercritical CO 2: a machine learning perspective. Front Med (Lausanne) 2024; 11:1467289. [PMID: 39286644 PMCID: PMC11402729 DOI: 10.3389/fmed.2024.1467289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2024] [Accepted: 08/20/2024] [Indexed: 09/19/2024] Open
Abstract
Inadequate bioavailability of therapeutic drugs, which is often the consequence of their unacceptable solubility and dissolution rates, is an indisputable operational challenge of pharmaceutical companies due to its detrimental effect on the therapeutic efficacy. Over the recent decades, application of supercritical fluids (SCFs) (mainly SCCO2) has attracted the attentions of many scientists as promising alternative of toxic and environmentally-hazardous organic solvents due to possessing positive advantages like low flammability, availability, high performance, eco-friendliness and safety/simplicity of operation. Nowadays, application of different machine learning (ML) as a versatile, robust and accurate approach for the prediction of different momentous parameters like solubility and bioavailability has been of great attentions due to the non-affordability and time-wasting nature of experimental investigations. The prominent goal of this article is to review the role of different ML-based tools for the prediction of solubility/bioavailability of drugs using SCCO2. Moreover, the importance of solubility factor in the pharmaceutical industry and different possible techniques for increasing the amount of this parameter in poorly-soluble drugs are comprehensively discussed. At the end, the efficiency of SCCO2 for improving the manufacturing process of drug nanocrystals is aimed to be discussed.
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Affiliation(s)
- Jawaher Abdullah Alamoudi
- Department of Pharmaceutical Sciences, College of Pharmacy, Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia
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Ghazwani M, Begum MY. Computational intelligence modeling of hyoscine drug solubility and solvent density in supercritical processing: gradient boosting, extra trees, and random forest models. Sci Rep 2023; 13:10046. [PMID: 37344621 DOI: 10.1038/s41598-023-37232-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2023] [Accepted: 06/18/2023] [Indexed: 06/23/2023] Open
Abstract
This work presents the results of using tree-based models, including Gradient Boosting, Extra Trees, and Random Forest, to model the solubility of hyoscine drug and solvent density based on pressure and temperature as inputs. The models were trained on a dataset of hyoscine drug with known solubility and density values, optimized with WCA algorithm, and their accuracy was evaluated using R2, MSE, MAPE, and Max Error metrics. The results showed that Gradient Boosting and Extra Trees models had high accuracy, with R2 values above 0.96 and low MAPE and Max Error values for both solubility and density output. The Random Forest model was less accurate than the other two models. These findings demonstrate the effectiveness of tree-based models for predicting the solubility and density of chemical compounds and have potential applications in determination of drug solubility prior to process design by correlation of solubility and density to input parameters including pressure and temperature.
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Affiliation(s)
- Mohammed Ghazwani
- Department of Pharmaceutics, College of Pharmacy, King Khalid University, P.O. Box 1882, 61441, Abha, Saudi Arabia
| | - M Yasmin Begum
- Department of Pharmaceutics, College of Pharmacy, King Khalid University, Guraiger, 62529, Abha, Saudi Arabia.
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Experimental validation and modeling study on the drug solubility in supercritical solvent: Case study on Exemestane drug. J Mol Liq 2023. [DOI: 10.1016/j.molliq.2023.121517] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/24/2023]
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Li Y, Alameri AA, Farhan ZA, AI_Sadi HL, Alosaimi ME, Ghaleb AbdalSalam A, Jumaah Jasim D, Hadrawi SK, Mohammed Al-Taee M, Lafta AH, Othman HA, Mousa Alzahrani S, Moniem AA, Alqadi T. Theoretical modeling study on preparation of nanosized drugs using supercritical-based processing: Determination of solubility of Chlorothiazide in Supercritical Carbon dioxide. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.120984] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Analysis of enhancing drug bioavailability via nanomedicine production approach using green chemistry route: systematic assessment of drug candidacy. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.120980] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Enhancing drugs bioavailability using nanomedicine approach: Predicting solubility of Tolmetin in supercritical solvent via advanced computational techniques. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.120103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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