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Preethi V, Vijukumar V, AnilaRaj S, Vidya V. Synthesis, characterization, DFT studies and evaluation of the potential anti-tumour activity of nicotinic hydrazide based Schiff base using in vitro and molecular docking techniques. Heliyon 2024; 10:e29689. [PMID: 38720735 PMCID: PMC11076660 DOI: 10.1016/j.heliyon.2024.e29689] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2024] [Revised: 03/29/2024] [Accepted: 04/12/2024] [Indexed: 05/12/2024] Open
Abstract
Breast cancer, one of the most serious issues worldwide, has been raising day by day. It has now become a necessary to develop a suitable drug to combat this terrible illness. Schiff bases are increasingly being used as powerful medications for a number of illnesses. BNH has now synthesized from Benzil and Nicotinic hydrazide and characterized experimentally by FT-IR, UV, 1H NMR,13CNMR and Mass analysis. DFT calculations were done using Gaussian 16 W with B3LYP/6-311 + G (d,p) and geometry of the compound is optimized. Frontier Molecular orbit (FMO), Mullikan atomic charges and Molecular Electrostatic Potential (MEP) were studied. Invitro antimicrobial studies were done using various bacteria and fungi. The synthesized compound is appropriate against bacterial and fungal actions. Invitro study were done using MCF-7 cell lines to analyze the anticancer property of the ligand. The outcome suggests that BNH may be employed in the future as a novel anticancer medication.
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Affiliation(s)
- V. Preethi
- Department of Chemistry, University College, Paalayam, Thiruvananthapuram, 695034, Kerala, India
| | - V.G. Vijukumar
- Department of Chemistry, University College, Paalayam, Thiruvananthapuram, 695034, Kerala, India
| | - S. AnilaRaj
- Department of Chemistry, University College, Paalayam, Thiruvananthapuram, 695034, Kerala, India
| | - V.G. Vidya
- Department of Chemistry, University College, Paalayam, Thiruvananthapuram, 695034, Kerala, India
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Spectroscopic, reactivity analysis and docking studies of 3-(adamantan-1-yl)-4-(4-fluorophenyl)-1-[(4-phenylpiperazin-1-yl)methyl]-4,5-dihdyro-1H-1,2,4-triazole—5-thione: DFT and MD simulations. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2022.134418] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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3
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Single Crystal XRD and DFT investigation of 1,5-dimethyl-4-[(2-oxo-1,2-diphenylethylidene) amino]-2-phenyl-1,2-dihydro-3H-pyrazol-3-one. RESULTS IN CHEMISTRY 2022. [DOI: 10.1016/j.rechem.2022.100665] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
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Algohary AM, Alhalafi MH. Design, synthesis and evaluate of imidazole, triazine and metastable oxazolone derivatives as chemosensor for detecting metals. JOURNAL OF SAUDI CHEMICAL SOCIETY 2022. [DOI: 10.1016/j.jscs.2022.101537] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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5
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Saba A, Sarwar F, Muhammad S, Ilyas M, Iqbal J, Al-Sehemi AG, Ayub K, Amjad Gilani M, Adnan M. Insighting the inhibitory potential of novel modafinil drug derivatives against estrogen alpha (ERα) of breast cancer through a triple hybrid computational methodology. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.120234] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
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6
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Cluster formation between an oxadiazole derivative with metal nanoclusters (Ag/Au/Cu), graphene quantum dot sheets, SERS studies, and solvent effects. Struct Chem 2022. [DOI: 10.1007/s11224-022-02052-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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Chandran K, Shane DI, Zochedh A, Sultan AB, Kathiresan T. Docking simulation and ADMET prediction based investigation on the phytochemical constituents of Noni ( Morinda citrifolia) fruit as a potential anticancer drug. In Silico Pharmacol 2022; 10:14. [PMID: 36034317 PMCID: PMC9411403 DOI: 10.1007/s40203-022-00130-4] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Accepted: 08/05/2022] [Indexed: 02/02/2023] Open
Abstract
Morinda citrifolia is a traditional plant used in Asian and African countries for its wide nutraceutical and therapeutic effects for the treatment of various ailments. The fruit of M. citrifolia has various biological properties such as anti-bacterial, anti-oxidant, anti-cancer. Using the molecular docking based investigation; we explored around twenty three bioactive phytochemicals in M. citrifolia fruit against human cancer. MAPK6 (mitogen-activated protein kinase 6) was selected as target protein and these twenty three phytochemicals along with a known MAPK6 inhibitor were docked against the target protein. The docking scores of the bioactive phytochemicals against MAPK6 protein range between - 4.5 kcal/mol to - 7.9 kcal/mol and the docking score of the standard drug (CID: 447077) was - 7.3 kcal/mol. Based on the binding affinity five phytochemicals asperuloside (- 6.7 kcal/mol), asperulosidic acid (- 7.2 kcal/mol), deacetylasperulosidic acid (- 7.0 kcal/mol), eugenol (- 6.8 kcal/mol) and rutin (- 7.9 kcal/mol) were chosen for further evaluation. These five compounds were further investigated through RC plot analysis, density function theory and ADMET properties. Stable linkage of protein-ligand interaction was observed through RC plot, density function theory showed the structural stability and reactivity of bioactive compounds through the energy gap between HOMO and LUMO and the ADMET (adsorption, distribution, metabolism, excretion and toxicity) studies showed the safety profile of the bioactive compounds. These in silico results support the utilization of M. citrifolia fruit in the traditional medication and the initiation for the development of new drug against human cancer through in vivo and in vitro evaluation. Supplementary Information The online version contains supplementary material available at 10.1007/s40203-022-00130-4.
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Affiliation(s)
- Kaliraj Chandran
- Department of Biotechnology, Kalasalingam Academy of Research and Education, Krishnankoil, Tamilnadu India
| | - Drose Ignatious Shane
- Department of Biotechnology, Kalasalingam Academy of Research and Education, Krishnankoil, Tamilnadu India
| | - Azar Zochedh
- Department of Biotechnology, Kalasalingam Academy of Research and Education, Krishnankoil, Tamilnadu India
| | - Asath Bahadur Sultan
- Department of Physics, Kalasalingam Academy of Research and Education, Krishnankoil, Tamilnadu India
| | - Thandavarayan Kathiresan
- Department of Biotechnology, Kalasalingam Academy of Research and Education, Krishnankoil, Tamilnadu India
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Dhonnar SL, Adole VA, More RA, Sadgir NV, Jagdale BS, Pawar TB, Elzagheid MI, Rhyman L, Ramasami P. Synthesis, molecular structure, electronic, spectroscopic, NLO and antimicrobial study of N-benzyl-2-(5-aryl-1,3,4-oxadiazol-2-yl)aniline derivatives. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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9
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Spectroscopic Investigation and Density Functional Theory prediction of First and Second order Hyperpolarizabilities of 1-(4-Bromophenyl)-3-(2,4-dichlorophenyl)-prop-2-en-1-one. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133807] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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10
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Zochedh A, Priya M, Shunmuganarayanan A, Thandavarayan K, Sultan AB. Investigation on structural, spectroscopic, DFT, biological activity and molecular docking simulation of essential oil Gamma-Terpinene. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133651] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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11
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Al-Mutairi AA, Mary YS, Mary YS, Soman S, Hassan HM, Al-Alshaikh MA, El-Emam AA. Spectroscopic, Docking and MD Simulation Analysis of an Adamantane Derivative with Solvation Effects in Different Solvents. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2086274] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Aamal A. Al-Mutairi
- Department of Chemistry, College of Sciences, Imam Mohammad Ibn Saud Islamic University (IMSIU), Riyadh, Saudi Arabia
| | | | | | - Sreejit Soman
- Stemskills Research and Education Lab Private Limited, Faridabad, Hariyana, India
| | - Hanan M. Hassan
- Department of Pharmacology and Biochemistry, Faculty of Pharmacy, Delta University for Science and Technology, Gamasa City, Egypt
| | - Monirah A. Al-Alshaikh
- Department of Chemistry, College of Sciences, King Saud University, Riyadh, Saudi Arabia
| | - Ali A. El-Emam
- Department of Medicinal Chemistry, Faculty of Pharmacy, Mansoura University, Mansoura, Egypt
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Spectroscopic Recognition of Metal Ions and Non-Linear Optical (NLO) Properties of Some Fluorinated Poly(1,3,4-Oxadiazole-Ether)s. CHEMOSENSORS 2022. [DOI: 10.3390/chemosensors10050183] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
In this paper, we examined the sensing ability of some fluorinated 1,3,4-oxadiazole-containing assemblies toward various metal ions and their nonlinear optical (NLO) properties. The changes in the spectral characteristics of these compounds in the existence of Mg2+, Mn2+, Ni2+, Cd2+, Zn2+, Co2+, Cu2+, Hg2+, Sn2+, and Ag+ metal ions were performed, and they were found to be selective and more sensitive toward the addition of Ag+, Co2+, and Cu2+ ions (new bands appeared). Instead, spectral changes in the presence of Mg2+, Mn2+, Ni2+, Cd2+, Zn2+, Hg2+, and Sn2+ were not significant, so we did not evaluate the corresponding binding parameters. Therefore, all of these compounds were found to be selective and sensitive to Ag+, Co2+, and Cu2+ ions. Furthermore, the first-order polarizability (αCT), the first-order hyperpolarizability (βCT), and the second-order hyperpolarizability (γCT) were evaluated using the solvatochromic approach, and the intramolecular charge transfer (ICT) characteristics were investigated using a generalized Mulliken–Hush (GMH) analysis.
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Al-Wahaibi LH, Abdalla M, Mary YS, Mary YS, Costa RA, Rana M, El-Emam AA, Hassan HM, Al-Shaalan NH. Spectroscopic, Solvation Effects and MD Simulation of an Adamantane-Carbohydrazide Derivative, a Potential Antiviral Agent. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2039233] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Lamya H. Al-Wahaibi
- Department of Chemistry, College of Sciences, Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia
| | - Mohnad Abdalla
- Key Laboratory of Chemical Biology (Ministry of Education), Department of Pharmaceutics, School of Pharmaceutical Sciences, Cheeloo College of Medicine, Shandong University, Jinan, P.R. China
| | | | | | - Renyer Alves Costa
- Department of Chemistry, Federal University of Amazonas (DQ-UFAM), Manaus, Brazil
| | - Meenakshi Rana
- Department of Physics, School of Sciences, Uttarakhand Open University, Haldwani, India
| | - Ali A. El-Emam
- Department of Medicinal Chemistry, Faculty of Pharmacy, Mansoura University, Mansoura, Egypt
| | - Hanan M. Hassan
- Department of Pharmacology and Biochemistry, Faculty of Pharmacy, Delta University for Science and Technology, International Costal Road, Gamasa City, Mansoura, Egypt
| | - Nora H. Al-Shaalan
- Department of Chemistry, College of Sciences, Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia
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14
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Investigation of the electronic properties of solvents (water, benzene, methanol) using IEFPCM model, spectroscopic investigation with docking and MD simulations of a thiadiazole derivative with anti-tumor activities. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2021.118061] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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15
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Reactivity properties and adsorption behavior of a triazole derivative – DFT and MD simulation studies. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.117439] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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16
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Mary YS, Mary YS, Rad AS, Yadav R, Celik I, Sarala S. Theoretical investigation on the reactive and interaction properties of sorafenib – DFT, AIM, spectroscopic and Hirshfeld analysis, docking and dynamics simulation. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.115652] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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17
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Al-Wahaibi LH, Mohamed AAB, Tawfik SS, Hassan HM, El-Emam AA. 1,3,4-Oxadiazole N-Mannich Bases: Synthesis, Antimicrobial, and Anti-Proliferative Activities. Molecules 2021; 26:2110. [PMID: 33916955 PMCID: PMC8067589 DOI: 10.3390/molecules26082110] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2021] [Revised: 03/29/2021] [Accepted: 03/31/2021] [Indexed: 12/15/2022] Open
Abstract
The reaction of 5-(3,4-dimethoxyphenyl)-1,3,4-oxadiazole-2(3H)-thione 3 with formaldehyde solution and primary aromatic amines or 1-substituted piperazines, in ethanol at room temperature yielded the corresponding N-Mannich bases 3-arylaminomethyl-5-(3,4-dimethoxyphenyl)-1,3,4-oxadiazole-2(3H)-thiones 4a-l or 3-[(4-substituted piperazin-1-yl)methyl]-5-(3,4-dimethoxyphenyl)-1,3,4-oxadiazole-2(3H)-thiones 5a-d, respectively. The in vitro inhibitory activity of compounds 4a-l and 5a-d was assessed against pathogenic Gram-positive, Gram-negative bacteria, and the yeast-like pathogenic fungus Candida albicans. The piperazinomethyl derivatives 5c and 5d displayed broad-spectrum antibacterial activities the minimal inhibitory concentration (MIC) 0.5-8 μg/mL) and compounds 4j, 4l, 5a, and 5b showed potent activity against the tested Gram-positive bacteria. In addition, the anti-proliferative activity of the compounds was evaluated against prostate cancer (PC3), human colorectal cancer (HCT-116), human hepatocellular carcinoma (HePG-2), human epithelioid carcinoma (HeLa), and human breast cancer (MCF7) cell lines. The optimum anti-proliferative activity was attained by compounds 4l, 5a, 5c, and 5d.
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Affiliation(s)
- Lamya H. Al-Wahaibi
- Department of Chemistry, College of Sciences, Princess Nourah Bint Abdulrahman University, Riyadh 11671, Saudi Arabia;
| | - Ahmed A. B. Mohamed
- Department of Medicinal Chemistry, Faculty of Pharmacy, Mansoura University, Mansoura 35516, Egypt;
| | - Samar S. Tawfik
- Department of Pharmaceutical Organic Chemistry, Faculty of Pharmacy, Mansoura University, Mansoura 35516, Egypt;
| | - Hanan M. Hassan
- Department of Pharmacology and Biochemistry, Faculty of Pharmacy, Delta University for Science and Technology, International Costal Road, Gamasa City, Mansoura 11152, Egypt;
| | - Ali A. El-Emam
- Department of Medicinal Chemistry, Faculty of Pharmacy, Mansoura University, Mansoura 35516, Egypt;
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18
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Souza WA, de Almeida AM, Pivatto M, de Almeida MV, Guedes GP, Resende JAL, Guerra W. Crystal structure and spectroscopy properties of new PtII complexes containing 5-alkyl-1,3,4-oxadiazol-2-thione derivatives. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129250] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
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19
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Hiremath SM, Khemalapure SS, Hiremath CS, Patil AS, Basanagouda M. Quantum chemical computational and spectroscopic (IR, Raman, NMR, and UV) studies on the 5-(5-methoxy-benzofuran-3-ylmethyl)-3H-[1, 3, 4] oxadiazole-2-thione. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.128041] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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20
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Singh P, Kumar A, Reena, Gupta A, Patil PS, Prabhu S, Garde C. Vibrational spectroscopic characterization, electronic absorption, optical nonlinearity computation and terahertz investigation of (2E) 3-(4-ethoxyphenyl)-1-(3-bromophenyl) prop-2-en-1-one for NLO device fabrication. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.126909] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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21
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El-Sayed AA, Ismail MF, Amr AEGE, Naglah AM. Synthesis, Antiproliferative, and Antioxidant Evaluation of 2-Pentylquinazolin-4(3 H)-one(thione) Derivatives with DFT Study. Molecules 2019; 24:molecules24203787. [PMID: 31640238 PMCID: PMC6832655 DOI: 10.3390/molecules24203787] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2019] [Revised: 10/19/2019] [Accepted: 10/20/2019] [Indexed: 11/17/2022] Open
Abstract
The current study was chiefly designed to examine the antiproliferative and antioxidant activities of some novel quinazolinone(thione) derivatives 6–14. The present work focused on two main points; firstly, comparing between quinazolinone and quinazolinthione derivatives. Whereas, antiproliferative (against two cell lines namely, HepG2 and MCF-7) and antioxidant (by two methods; ABTS and DPPH) activities of the investigated compounds, the best quinazolinthione derivatives were 6 and 14, which exhibited excellent potencies comparable to quinazolinone derivatives 5 and 9, respectively. Secondly, we compared the activity of four series of Schiff bases which included the quinazolinone moiety (11a–d). In addition, the antiproliferative and antioxidant activities of the compounds with various aryl aldehyde hydrazone derivatives (11a–d) analogs were studied. The compounds exhibited potency that increased with increasing electron donating group in p-position (OH > OMe > Cl) due to extended conjugated systems. Noteworthy, most of antiproliferative and antioxidant activities results for the tested compounds are consistent with the DFT calculations.
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Affiliation(s)
- Amira A El-Sayed
- Department of Chemistry, Faculty of Science, Ain Shams University, 11566 Abbassia, Cairo 11566, Egypt.
| | - Mahmoud F Ismail
- Department of Chemistry, Faculty of Science, Ain Shams University, 11566 Abbassia, Cairo 11566, Egypt.
| | - Abd El-Galil E Amr
- Pharmaceutical Chemistry Department, Drug Exploration & Development Chair (DEDC), College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia.
- Applied Organic Chemistry Department, National Research Center, Cairo, Dokki 12622, Egypt.
| | - Ahmed M Naglah
- Pharmaceutical Chemistry Department, Drug Exploration & Development Chair (DEDC), College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia.
- Peptide Chemistry Department, Chemical Industries Research Division, National Research Centre, Dokki, Cairo 12622, Egypt.
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Afzal A, Thayyil MS, Shariq M, Mary YS, Resmi KS, Thomas R, Islam N, Abinu AJ. Anti‐Cancerous Brucine and Colchicine: Experimental and Theoretical Characterization. ChemistrySelect 2019. [DOI: 10.1002/slct.201902698] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Aboothahir Afzal
- Department of PhysicsCalicut University, Malappuram district Kerala
- Department of PhysicsGovt. Arts and Science college Calicut Kerala
| | | | - Mohammad Shariq
- Department of PhysicsFaculty of ScienceJazan University, Jazan Saudi Arabia
| | - Yohannan Sheena Mary
- Department of PhysicsFatima Mata National College(Autonomous), Kollam, Kerala India
| | | | - Renjith Thomas
- Department of ChemistrySt. Berchmans College (Autonomous), Changanasserry, Kerala India
| | - Nasarul Islam
- Department of ChemistryGovt. Degree College, Sopore, J&K-193201 India
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Mary YS, Mary YS, Thomas R, Narayana B, Samshuddin S, Sarojini BK, Armaković S, Armaković SJ, Pillai GG. Theoretical Studies on the Structure and Various Physico-Chemical and Biological Properties of a Terphenyl Derivative with Immense Anti-Protozoan Activity. Polycycl Aromat Compd 2019. [DOI: 10.1080/10406638.2019.1624974] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Y. Sheena Mary
- Department of Physics, Fatima Mata National College (Autonomous), Kollam, Kerala, India
| | - Y. Shyma Mary
- Department of Physics, Fatima Mata National College (Autonomous), Kollam, Kerala, India
| | - Renjith Thomas
- Department of Chemistry, St. Berchmans College (Autonomous), Changanassery, Kerala, India
| | - B. Narayana
- Department of Chemistry, Mangalore University, Mangalagangothri, Karnataka, India
| | - S. Samshuddin
- Department of Chemistry, Mangalore University, Mangalagangothri, Karnataka, India
- Department of Chemistry, SDM Institute of Technology, Ujire, Karnataka, India
| | - B. K. Sarojini
- Department of Industrial Chemistry, Mangalore University, Mangalagangothri, Karnataka, India
| | - Stevan Armaković
- Department of Physics, Faculty of Sciences, University of Novi Sad, Novi Sad, Serbia
| | - Sanja J. Armaković
- Department of Chemistry, Faculty of Sciences, University of Novi Sad, Novi Sad, Serbia
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Bhat MA, Jameel S, Jan M, Rather MA, Bhat SA, Butcher RJ, Srivastava SK. Synthesis, characterization, computational and cytotoxic evaluation of novel [N, N-dialkyl ammonium] [diphenyl/ethyl phosphoryl oxides]. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.02.096] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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25
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Hiremath SM, Suvitha A, Patil NR, Hiremath CS, Khemalapure SS, Pattanayak SK, Negalurmath VS, Obelannavar K, Armaković SJ, Armaković S. Synthesis of 5-(5-methyl-benzofuran-3-ylmethyl)-3H- [1, 3, 4] oxadiazole-2-thione and investigation of its spectroscopic, reactivity, optoelectronic and drug likeness properties by combined computational and experimental approach. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 205:95-110. [PMID: 30015034 DOI: 10.1016/j.saa.2018.07.003] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2018] [Revised: 06/28/2018] [Accepted: 07/03/2018] [Indexed: 05/07/2023]
Abstract
This paper reports the synthesis of 5-(5-methyl-benzofuran-3-ylmethyl)-3H- [1, 3, 4] oxadiazole-2-thione (5MBOT) and characterization by FT-IR, FT-Raman, 1H NMR, 13C NMR and UV spectral studies. The density functional theory (DFT) calculations have been executed for the 5MBOT using B3LYP/6-31++G (d, p) basis set. The fundamental modes of the vibrations were designated by the potential energy distribution (PED), and the computed and experimental values support each other. The 1H NMR and 13C NMR chemical shifts of 5MBOT were estimated by gauge-including atomic orbitals (GIAO) method and compared with the experimental chemical shifts. The UV-Vis method used to study the visible absorption maxima (λmax) by using Time-Dependent DFT. Further, the Mulliken population analysis (MPA), natural population analysis (NPA) charges, thermodynamic properties at different temperatures were presented. The calculated HOMO and LUMO energies show that charge transfer within the molecule. The natural bonds orbital (NBO) also computed. Optoelectronic properties have been carried out by combination of DFT calculations and molecular dynamics (MD) simulations, in order to assess the potential of this structure for applications in organic electronics. Further, the study encompassed calculations of reorganization energies for holes and electrons and charge transfer rates. DFT calculations have been also used in order to identify locations possibly sensitive towards the autoxidation mechanism, which correlates between bond dissociation energy for hydrogen abstraction and the mechanism. The MD simulations have been used to understand interaction of 5MBOT with water molecules. Molecular docking studies reveals the antifungal activity of 5MBOT may be due to hydrogen bonding and hydrophobic interactions with different antifungal proteins.
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Affiliation(s)
- Sudhir M Hiremath
- Department of Physics, V.T.U. Regional Research Centre, Belagavi 590 018, Karnataka, India
| | - A Suvitha
- Department of Physics, C.M.R. Institute of Technology, Bangalore 560 037, Karnataka, India
| | - Ninganagouda R Patil
- Department of Physics, B.V.B. College of Engineering and Technology, Hubballi 580 031, Karnataka, India.
| | - Chidanandayya S Hiremath
- Department of Physics, S.K. Arts and H.S.K. Science Institute, Hubballi 580 031, Karnataka, India.
| | - Seema S Khemalapure
- Department of Physics, KLE Dr. M.S. Sheshagiri College of Engineering and Technology, Belagavi 590008, Karnataka, India
| | | | | | - Kotresh Obelannavar
- Department of Chemistry, Karnataka Science College, Dharwad 580 001, Karnataka, India
| | - Sanja J Armaković
- University of Novi Sad, Faculty of Sciences, Department of Chemistry, Biochemistry and Environmental Protection, Trg D. Obradovića 3, 21000 Novi Sad, Serbia
| | - Stevan Armaković
- University of Novi Sad, Faculty of Sciences, Department of Physics, Trg D. Obradovića 4, 21000 Novi Sad, Serbia
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26
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Synthesis and spectroscopic study of three new oxadiazole derivatives with detailed computational evaluation of their reactivity and pharmaceutical potential. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.07.026] [Citation(s) in RCA: 75] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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27
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Molecular structure, vibrational spectra, NMR, UV, NBO, NLO, HOMO-LUMO and molecular docking of 2-(4, 6-dimethyl-1-benzofuran-3-yl) acetic acid (2DBAA): Experimental and theoretical approach. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.05.109] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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28
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Study on the structure, vibrational analysis and molecular docking of fluorophenyl derivatives using FT-IR and density functional theory computations. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.03.070] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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29
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Al-Tamimi AMS, Mary YS, Miniyar PB, Al-Wahaibi LH, El-Emam AA, Armaković S, Armaković SJ. Synthesis, spectroscopic analyses, chemical reactivity and molecular docking study and anti-tubercular activity of pyrazine and condensed oxadiazole derivatives. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.03.085] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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30
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Synthesis, spectroscopic analyses (FT-IR and NMR), vibrational study, chemical reactivity and molecular docking study and anti-tubercular activity of condensed oxadiazole and pyrazine derivatives. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2017.12.018] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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31
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Spectroscopic analysis of 8-hydroxyquinoline derivatives and investigation of its reactive properties by DFT and molecular dynamics simulations. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2017.11.120] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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32
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Kumar A, Kumar R, Gupta A, Tandon P, D'silva ED. Molecular structure, nonlinear optical studies and spectroscopic analysis of chalcone derivative (2E)-3-[4-(methylsulfanyl) phenyl]-1-(3-bromophenyl) prop-2-en-1-one by DFT calculations. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.08.072] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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33
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Sert Y, Öztürk N, Al-Omary FAM, Alaşalvar C, Al-Shehri MM, El-Emam AA, Gökce H. Experimental (FT-IR, Laser-Raman and NMR) and theoretical spectroscopic analysis of 3-[(N-methylanilino)methyl]-5-(thiophen-2-yl)-1,3,4-oxadiazole-2(3H)-thione. JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY 2017. [DOI: 10.1142/s0219633617500249] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The structure of a potential bioactive agent namely, 3-[([Formula: see text]-methylanilino)methyl]-5-(thiophen-2-yl)-1,3,4-oxadiazole-2(3[Formula: see text]-thione was characterized by proton and carbon-13 nuclear magnetic resonance (NMR) chemical shifts, Fourier transform infrared (FT-IR) and Laser-Raman spectroscopic techniques. The quantum chemical computations of molecular structures (disorder I and disorder II forms), vibrational wavenumbers, carbon-13 and proton chemical shifts and UV-Vis spectroscopic parameters have been performed with DFT/B3LYP method at 6-311[Formula: see text]G(d,p) basis set. The highest occupied molecular orbital (HOMO), lowest unoccupied molecular orbital (LUMO), nonlinear optical (NLO) properties and natural bond orbital (NBO) analyses have been theoretically examined with the mentioned calculation level. The calculated values have been compared with the recorded experimental data. The computed molecular geometric parameters, vibrational wavenumbers, NMR chemical shifts, and UV-Vis wavelengths have been found to be in a good harmony with the experimental values and spectral results of similar structures in the literature. We believe that the work will be of considerable interest to anyone working in the area of theoretical chemistry, whether in industry or academics.
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Affiliation(s)
- Yusuf Sert
- Sorgun Vocational School, Bozok University, Yozgat 66100, Turkey
| | - Nuri Öztürk
- Dereli Vocational School, Giresun University, 28950 Giresun, Turkey
| | - Fatmah A. M. Al-Omary
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia
| | - Can Alaşalvar
- Vocational School of Technical Sciences, Giresun University, 28100 Giresun, Turkey
| | - Mona M. Al-Shehri
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia
| | - Ali A. El-Emam
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia
| | - Halil Gökce
- Vocational School of Health Services, Giresun University, 28200 Giresun, Turkey
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34
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Synthesis, crystal structure, biological evaluation, and molecular docking studies of quinoline-arylpiperazine derivative as potent α1A-adrenoceptor antagonist. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2016.10.084] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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35
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Gladkov LL, Matsukovich AS, Pavich TA, Gaponenko SV, El-Emam AA. Vibrational Spectra of 3-(Adamantan-1-YL)-4-(2-Propen-1-YL)-1H-1,2,4-Triazole-5(4H)-Thione. JOURNAL OF APPLIED SPECTROSCOPY 2017. [DOI: 10.1007/s10812-017-0385-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
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36
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Al-Omary FAM, Al-Rasheed LS, Ghabbour HA, El-Emam AA. Crystal structure of 3-(adamantan-1-yl)-1-(4-bromophenyl)urea, C 17H 21BrN 2O. Z KRIST-NEW CRYST ST 2017. [DOI: 10.1515/ncrs-2016-0118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
C17H21BrN2O, orthorhombic, Pna21 (no. 33), a = 9.2558(12) Å, b = 13.0186(17) Å, c = 13.4684(18) Å, V = 1622.9(4) Å3, Z = 4, R
gt(F) = 0.0471, wR
ref(F
2) = 0.1059, T = 100 K.
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Affiliation(s)
- Fatmah A. M. Al-Omary
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P.O. Box 2457, Riyadh 11451, Saudi Arabia
| | - Lamees S. Al-Rasheed
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P.O. Box 2457, Riyadh 11451, Saudi Arabia
| | - Hazem A. Ghabbour
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P.O. Box 2457, Riyadh 11451, Saudi Arabia
- Department of Medicinal Chemistry, Faculty of Pharmacy, University of Mansoura, Mansoura 35516, Egypt
| | - Ali A. El-Emam
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P.O. Box 2457, Riyadh 11451, Saudi Arabia
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37
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Abstract
AbstractC17H21BrN2S, orthorhombic,Pbca(No. 61),a= 17.0675(7) Å,b= 8.3422(3) Å,c= 22.5970(8) Å,V= 3217.4(2) Å3,Z= 8,Rgt(F)= 0.0329,wRref(F2) = 0.0724,T= 100 K.
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38
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Zabardasti A, Sharifi-Rad A. A new approach on diminutive effects for non-covalent interactions: fused bicyclic hydrogen-bonded complexes of hypohalous acids with fluoromethanol. Mol Phys 2016. [DOI: 10.1080/00268976.2016.1232445] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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39
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Crystal structure of N-(adamantan-1-yl)-4-phenylpiperazine-1-carbothioamide, C 21H 29N 3S. Z KRIST-NEW CRYST ST 2016. [DOI: 10.1515/ncrs-2016-0056] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
C21H29N3S, orthorhombic, Pbca (No. 61), a = 9.8658(7) Å, b = 11.7298(9) Å, c = 31.960(2) Å, V = 3698.5(5) Å3, Z = 8, R
gt
(F) = 0.0644, wR
ref
(F
2) = 0.1684, T = 100 K.
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40
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Al-Wahaibi LH, Ghabbour HA, Mostafa GAE, Almutairi MS, El-Emam AA. Crystal structure of 1-(adamantan-1-yl)-3-phenylthiourea, C17H22N2S. Z KRIST-NEW CRYST ST 2016. [DOI: 10.1515/ncrs-2015-0205] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
AbstractC17H22N2S, orthorhombic, Pbca (no. 61), a = 12.0579(7) Å, b = 11.12133(5) Å, c = 21.9741(13) Å, V = 2946.7(3) Å3, Z = 8, Rgt(F) = 0.0470, wRref(F2) = 0.1125, T = 100 K.
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Affiliation(s)
- Lamya H. Al-Wahaibi
- 1Department of Chemistry, College of Sciences, Princess Nourah Bint Abdulrahman, University, Riyadh 11671, Saudi Arabia
| | | | - Gamal A. E. Mostafa
- 2Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P.O. Box 2457, Riaydh 11451, Saudi Arabia
| | - Maha S. Almutairi
- 2Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P.O. Box 2457, Riaydh 11451, Saudi Arabia
| | - Ali A. El-Emam
- 2Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P.O. Box 2457, Riaydh 11451, Saudi Arabia
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41
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Al-Omary FAM, Ghabbour HA, AlRabiah H, Al-Abdullah ES, El-Emam AA. Crystal structure of 1-(adamantan-1-yl)-3-(4-chlorophenyl)thiourea, C 17H 21ClN 2S. Z KRIST-NEW CRYST ST 2016. [DOI: 10.1515/ncrs-2015-0241] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
AbstractC17H21ClN2S, orthorhombic,Pbca(no. 61),a= 17.2134(6) Å,b= 8.2251(2) Å,c= 22.5220(7) Å,V= 3188.71(17) Å3,Z= 8,Rgt(F)= 0.0371,wRref(F2)= 0.0933,T= 100 K.
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Affiliation(s)
- Fatmah A. M. Al-Omary
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P. O. Box 2457, Riaydh 11451, Saudi Arabia
| | | | - Haitham AlRabiah
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P. O. Box 2457, Riaydh 11451, Saudi Arabia
| | - Ebtehal S. Al-Abdullah
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P. O. Box 2457, Riaydh 11451, Saudi Arabia
| | - Ali A. El-Emam
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P. O. Box 2457, Riaydh 11451, Saudi Arabia
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Xu W, Shao B, Xu X, Jiang R, Yuan M. Structural analysis of (S)-1-((1H-benzo[d][1,2,3]triazol-1-yl)oxy)-3-(4-(2-methoxyphenyl)piperazin-1-yl)propan-2-ol and binding mechanism with α1A-adrenoceptor: TDDFT calculations, X-ray crystallography and molecular docking. J Mol Struct 2016. [DOI: 10.1016/j.molstruc.2015.10.031] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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43
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Xu W, Huang JJ, Shao BH, Xu XJ, Jiang RW, Yuan M. X-ray Crystallography, DFT Calculations and Molecular Docking of Indole-Arylpiperazine Derivatives as α1A-Adrenoceptor Antagonists. Molecules 2015; 20:19674-89. [PMID: 26528963 PMCID: PMC6332402 DOI: 10.3390/molecules201119651] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2015] [Accepted: 10/16/2015] [Indexed: 01/22/2023] Open
Abstract
Indole-arylpiperazine derivatives have exhibited good selectivity for the α1A-adrenoceptor, but the structure-activity-binding mechanism relationship remains unclear. In the current study, three compounds (1, 2 and 3) were investigated through single-crystal X-ray diffraction analysis, density functional theory (DFT) calculations and molecular docking using a homology model of the α1A receptor. Compounds 1 and 3 form H-bonds networks to stabilize their three-dimensional structures, while C–H···π interactions play a significant role in the packing of 2. Based on DFT-optimized conformations, the HOMO-LUMO energy gaps and molecular electrostatic potential (MEP) were theoretically calculated at the B3LYP/6-311G (d, p) level of theory. Chemical reactivity increases in the order of 3 < 2 < 1, and the maximum positive region of the MEP maps is mainly localized over the NH group. The binding mechanisms of ligand-α1A-adrenoceptor complexes were illustrated by molecular docking. Binding to Gln177 of the second extracellular loop region via hydrogen bonds is likely to be essential for α1A-selective antagonists. The present work sheds light on the studies of structure-activity-binding mechanism and aids in the design of α1A antagonists with high selectivity.
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Affiliation(s)
- Wei Xu
- Pharmaceutical Research Center, Guangzhou Medical University, 195# Dongfengxi Road, Guangzhou 510182, China.
| | - Jun-Jun Huang
- Pharmaceutical Research Center, Guangzhou Medical University, 195# Dongfengxi Road, Guangzhou 510182, China.
| | - Bin-Hao Shao
- Pharmaceutical Research Center, Guangzhou Medical University, 195# Dongfengxi Road, Guangzhou 510182, China.
| | - Xing-Jie Xu
- Pharmaceutical Research Center, Guangzhou Medical University, 195# Dongfengxi Road, Guangzhou 510182, China.
| | - Ren-Wang Jiang
- School of Pharmaceutical Sciences, Jinan University, Guangzhou 510632, China.
| | - Mu Yuan
- Pharmaceutical Research Center, Guangzhou Medical University, 195# Dongfengxi Road, Guangzhou 510182, China.
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