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N Hegde V, J S S, B S C, Benedict Leoma M, N K L. Structural, computational and in silico studies of 4-bromo-3-flurobenzonitrile as anti-Alzheimer and anti-Parkinson agents. J Biomol Struct Dyn 2024; 42:4619-4643. [PMID: 37418246 DOI: 10.1080/07391102.2023.2226755] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Accepted: 05/29/2023] [Indexed: 07/08/2023]
Abstract
A novel dimer of the 4-bromo-3-fluorobenzonitrile was crystallized and studied using a spectroscopic method such as the scanning electron microscope method. The computational simulations substantiated the structural analysis findings. The Hirshfeld surface analysis has been performed for visualizing, exploring and quantifying the intra and inter-molecular interactions that stabilize the crystal packing of the compound. The NBO and QTAIM analyses were applied to study the nature and origin of the attractive forces involved in the crystal structure. Further, the pharmacokinetic properties of the compound were evaluated, indicating good brain-blood barrier and central nervous system penetration capability. Hence, in silico studies was carried out to explore the binding pattern of the titled compound against acetylcholinesterase and butyrylcholinesterase, and tumor necrosis factor-alpha converting enzyme proteins using molecular docking and molecular dynamics simulations approach. Further, the titled compound is compared with standard drugs through molecular docking studies. The in silico studies finally predicts that the compound under investigation may act as a good inhibitor for treating Alzheimer's disease and further in vitro and in vivo studies may provide its therapeutic potential.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
| | - Shyambhargav J S
- Department of Studies in Physics, University of Mysore, Mysuru, India
| | - Chethan B S
- Department of Studies in Physics, University of Mysore, Mysuru, India
| | | | - Lokanath N K
- Department of Studies in Physics, University of Mysore, Mysuru, India
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Ahmed GE, Elshahid ZA, El-Sawy ER, Abdel-Aziz MS, Abdel-Aziem A. Synthesis, biofilm formation inhibitory, and inflammation inhibitory activities of new coumarin derivatives. Sci Rep 2024; 14:9106. [PMID: 38643226 PMCID: PMC11032357 DOI: 10.1038/s41598-024-59072-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2023] [Accepted: 04/07/2024] [Indexed: 04/22/2024] Open
Abstract
Coumarins are heterocycles of great interest in the development of valuable active structures in chemistry and biological domains. The ability of coumarins to inhibit biofilm formation of Gram positive bacterium (Staphylococcus aureus), Gram negative bacterium (Escherichia coli) as well as the methicillin-resistant S. aureus (MRSA) has been previously described. In the present work, new hybrid coumarin-heterocycles have been synthesized via the reaction of coumarin-6-sulfonyl chloride and 6-aminocoumarin with different small heterocycle moieties. The biological efficacy of the new compounds was evaluated towards their ability to inhibit biofilm formation and their anti-inflammatory properties. The antimicrobial activities of the newly synthesized compounds were tested against Gram positive bacterium (S. aureus ATCC 6538), Gram negative bacterium (E. coli ATCC 25922), yeast (Candida albicans ATCC 10231) and the fungus (Aspergillus niger NRRL-A326). Compounds 4d, 4e, 4f, 6a and 9 showed significant MIC and MBC values against S. aureus, E. coli, C. albicans, and methicillin-resistant S. aureus (MRSA) with especial incidence on compound 9 which surpasses all the other compounds giving MIC and MBC values of (4.88 and 9.76 µg/mL for S. aureus), (78.13 and 312.5 µg/mL for E. coli), (9.77 and 78.13 µg/mL for C. albicans), and (39.06 and 76.7 µg/mL for MRSA), respectively. With reference to the antibiofilm activity, compound 9 exhibited potent antibiofilm activity with IC50 of 60, 133.32, and 19.67 µg/mL against S. aureus, E. coli, and MRSA, (respectively) considering the reference drug (neomycin). Out of all studied compounds, the anti-inflammatory results indicated that compound 4d effectively inhibited nitric oxide production in lipopolysaccharide-(LPS-) stimulated RAW264.7 macrophage cells, giving NO% inhibition of 70% compared to Sulindac (55.2%).
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Affiliation(s)
- Ghada E Ahmed
- High Canal Institute of Engineering & Technology, Suez, Egypt
| | - Zeinab A Elshahid
- Chemistry of Natural and Microbial Products Department, Pharmaceutical and Drug Industries Research Institute, National Research Centre, Giza, Egypt
| | - Eslam Reda El-Sawy
- Chemistry of Natural Compounds Department, National Research Centre, Dokki, Giza, 12622, Egypt
| | - Mohamed S Abdel-Aziz
- Microbial Chemistry Department, Genetic Engineering and Biotechnology Institute, National Research Centre, Dokki, Giza, 12622, Egypt
| | - Anhar Abdel-Aziem
- Chemistry Department, Faculty of Science (Girl's Branch), Al-Azhar University, Cairo, 11754, Egypt.
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Rohman N, Ardiansah B, Wukirsari T, Judeh Z. Recent Trends in the Synthesis and Bioactivity of Coumarin, Coumarin-Chalcone, and Coumarin-Triazole Molecular Hybrids. Molecules 2024; 29:1026. [PMID: 38474540 DOI: 10.3390/molecules29051026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2023] [Revised: 02/08/2024] [Accepted: 02/10/2024] [Indexed: 03/14/2024] Open
Abstract
Molecular hybridization represents a new approach in drug discovery in which specific chromophores are strategically combined to create novel drugs with enhanced therapeutic effects. This innovative strategy leverages the strengths of individual chromophores to address complex biological challenges, synergize beneficial properties, optimize pharmacokinetics, and overcome limitations associated with single-agent therapies. Coumarins are documented to possess several bioactivities and have therefore been targeted for combination with other active moieties to create molecular hybrids. This review summarizes recent (2013-2023) trends in the synthesis of coumarins, as well as coumarin-chalcone and coumarin-triazole molecular hybrids. To cover the wide aspects of this area, we have included differently substituted coumarins, chalcones, 1,2,3- and 1,2,4-triazoles in this review and considered the point of fusion/attachment with coumarin to show the diversity of these hybrids. The reported syntheses mainly relied on well-established chemistry without the need for strict reaction conditions and usually produced high yields. Additionally, we discussed the bioactivities of the reported compounds, including antioxidative, antimicrobial, anticancer, antidiabetic, and anti-cholinesterase activities and commented on their IC50 where possible. Promising bioactivity results have been obtained so far. It is noted that mechanistic studies are infrequently found in the published work, which was also mentioned in this review to give the reader a better understanding. This review aims to provide valuable information to enable further developments in this field.
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Affiliation(s)
- Nur Rohman
- Department of Chemistry, Faculty of Mathematics and Natural Sciences, Universitas Indonesia, Depok 16424, Indonesia
| | - Bayu Ardiansah
- Department of Chemistry, Faculty of Mathematics and Natural Sciences, Universitas Indonesia, Depok 16424, Indonesia
| | - Tuti Wukirsari
- Department of Chemistry, Faculty of Mathematics and Natural Sciences, Universitas Indonesia, Depok 16424, Indonesia
| | - Zaher Judeh
- School of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, 62 Nanyang Drive, N1.2-B1-14, Singapore 637459, Singapore
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S V N, B S C, Mahesha, K N CP, M K H, N K L. In-silico investigation of 4-nitro-N-1H-pyrazol-3-ylbenzamide towards its potential use against SARS-CoV-2: a DFT, molecular docking and molecular dynamics study. J Biomol Struct Dyn 2023:1-21. [PMID: 37771166 DOI: 10.1080/07391102.2023.2262597] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2023] [Accepted: 09/17/2023] [Indexed: 09/30/2023]
Abstract
In the present research work, we report the synthesis and characterization of novel pyrazole derivative obtained by the condensation reaction of 4-nitro benzaldehyde group with one equivalent of the 2-amino pyrazole yielding 4-nitro-N-1H-pyrazol-3-ylbenzamide with high yield. The two symmetry-independent molecules (molecule A and molecule B) differ about the central C-N bond, with the dihedral angles between the pyrazole ring system and the nitrobenzene ring being 13.90° and 18.64°, respectively. By optimizing the symmetry-independent dimer molecules, the rotational barrier between the conformers is found to be within the 2.5-5.5 kcal/mol range. QTAIM and RDG based NCI isosurface revealed the presence of strong N-H…N and C-H…O hydrogen bonds which stabilize the two independent centrosymmetric inversion-related dimers. Further, weak and short directional interactions such as C-H…N, H…H and C-H…π were also analyzed systematically using various topological parameters. The compound is found to adhere to the Lipinski's rule of five and exhibit good pharmacokinetic properties. The results of molecular docking studies performed against SARS-CoV-2 virus main protease (PDB IDs: 6LU7, 6W9C and 6WQF) revealed that the compound showed better docking scores. Molecular docking studies verified the inhibition activity of the synthesized novel compound. Finally, the binding free energy and contributed energies were calculated using MM-GBSA method. The 6LU7-ligand complex showed highest binding free energy and among all other interactions, the contributions of the covalent binding and van der Waals energy are found to be significant.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Niranjana S V
- Department of Studies in Physics, University of Mysore, Mysuru, India
- Department of Studies in Physics, Karnataka State Open University, Mysuru, India
| | - Chethan B S
- Department of Studies in Physics, University of Mysore, Mysuru, India
| | - Mahesha
- Department of Studies in Physics, University of Mysore, Mysuru, India
- Department of Physics, SJCE, JSS Science and Technology University, Mysuru, India
| | - Chethan Prathap K N
- Department of Physics, University College of Science, Tumkur University, Tumakuru, India
| | - Hema M K
- Department of Studies in Physics, University of Mysore, Mysuru, India
| | - Lokanath N K
- Department of Studies in Physics, University of Mysore, Mysuru, India
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Synthesis and characterization of Zinc(II) complex with ONO donor type new phenylpropanehydrazide based ligand: Crystal structure, Hirshfeld surface analysis, DFT, energy frameworks and molecular docking. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.132429] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Aminarshad F, Heidari S, Mostajeran N, Massah AR. Design, solvent-free synthesis and antibacterial activity evaluation of new coumarin sulfonamides. JOURNAL OF THE IRANIAN CHEMICAL SOCIETY 2022. [DOI: 10.1007/s13738-021-02344-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Cocco A, Caria P, Sanna G, Stagi L, Cadoni E, Corpino R, Ricci PC, Carbonaro CM, Secci F. Synthesis and Photophysical Properties of Fluorescent 6-Aryl-D-π-A Coumarin Derivatives. ACS OMEGA 2021; 6:33708-33716. [PMID: 34926919 PMCID: PMC8675031 DOI: 10.1021/acsomega.1c04810] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/01/2021] [Accepted: 11/10/2021] [Indexed: 06/14/2023]
Abstract
A series of 6-aryl coumarin dyes were synthesized in satisfactory yields by Pd-catalyzed Suzuki cross-coupling reactions with a panel of boronic acids and coumarin bromides. Photophysical studies highlighted a large Stoke shift and interesting fluorescence quantum yield for these compounds. Optical properties were also investigated with the aid of quantum chemical calculations. The treatment of selected coumarin dyes with increasing amounts of trifluoroacetic acid showed that their fluorescence can be strongly influenced by pH (fluorescence quenching at high acid concentrations), while the addition of Fe3+ and Al3+ metal ions allowed to highlight dichotomous behavior with the corresponding reduction in fluorescence with the increase of [Fe3+] or [Al3+]. Finally, biological assays and fluorescence microscopy imaging investigations indicated that these compounds can be used as potential biomarkers in living and fixed cells.
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Affiliation(s)
- Andrea Cocco
- Department
of Chemical and Geological Sciences, University
of Cagliari, Monserrato, 09042 Cagliari, Italy
| | - Paola Caria
- Department
of Biomedical Sciences, University of Cagliari, Monserrato, 09042 Cagliari, Italy
| | - Giuseppina Sanna
- Department
of Biomedical Sciences, University of Cagliari, Monserrato, 09042 Cagliari, Italy
| | - Luigi Stagi
- Department
of Chemistry and Pharmacy, Laboratory of Materials Science and Nanotechnology,
CR-INSTM, University of Sassari, via Vienna 2, 07100 Sassari, Italy
| | - Enzo Cadoni
- Department
of Chemical and Geological Sciences, University
of Cagliari, Monserrato, 09042 Cagliari, Italy
| | - Riccardo Corpino
- Department
of Physics, University of Cagliari, SP 8, Monserrato, 09042 Cagliari, Italy
| | - Pier Carlo Ricci
- Department
of Physics, University of Cagliari, SP 8, Monserrato, 09042 Cagliari, Italy
| | - Carlo Maria Carbonaro
- Department
of Physics, University of Cagliari, SP 8, Monserrato, 09042 Cagliari, Italy
| | - Francesco Secci
- Department
of Chemical and Geological Sciences, University
of Cagliari, Monserrato, 09042 Cagliari, Italy
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Mahesha, Raveesha T, Hema M, Pampa K, Chandrashekara P, Mantelingu K, Demappa T, Lokanath N. Analysis of supramolecular self-assembly of two chromene derivatives: Synthesis, crystal structure, Hirshfeld surface, quantum computational and molecular docking studies. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129104] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
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Mangasuli SN. Synthesis of novel coumarin-thiazolidine-2,4-dione derivatives: An approach to computational studies and biological evaluation. RESULTS IN CHEMISTRY 2021. [DOI: 10.1016/j.rechem.2021.100105] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
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10
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Overview on developed synthesis procedures of coumarin heterocycles. JOURNAL OF THE IRANIAN CHEMICAL SOCIETY 2020. [DOI: 10.1007/s13738-020-01984-1] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
AbstractConsidering highly valuable biological and pharmaceutical properties of coumarins, the synthesis of these heterocycles has been considered for many organic and pharmaceutical chemists. This review includes the recent research in synthesis methods of coumarin systems, investigating their biological properties and describing the literature reports for the period of 2016 to the middle of 2020. In this review, we have classified the contents based on co-groups of coumarin ring. These reported methods are carried out in the classical and non-classical conditions particularly under green condition such as using green solvent, catalyst and other procedures.
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Jyothi KL, Gautam R, Swain D, Guru Row TN, Lokanath NK. Cocrystals of Gallic Acid with Urea and Propionamide: Supramolecular Structures, Hirshfeld Surface Analysis, and DFT Studies. CRYSTAL RESEARCH AND TECHNOLOGY 2019. [DOI: 10.1002/crat.201900016] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Kanchi Lakshminarayanashetty Jyothi
- Department of Studies in Physics, Manasagangotri; University of Mysore; Mysuru 570 006 India
- Department of Physics; Government College for Boys; Chintamani 563125 India
| | - Raj Gautam
- Solid State and Structural Chemistry Unit; Indian Institute of Science; Bengaluru 560012 India
| | - Diptikanta Swain
- Solid State and Structural Chemistry Unit; Indian Institute of Science; Bengaluru 560012 India
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Chethan Prathap K, Lokanath N. Three novel coumarin-benzenesulfonylhydrazide hybrids: Synthesis, characterization, crystal structure, Hirshfeld surface, DFT and NBO studies. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.06.022] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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