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Efeoglu C, Taskin S, Selcuk O, Celik B, Tumkaya E, Ece A, Sari H, Seferoglu Z, Ayaz F, Nural Y. Synthesis, anti-inflammatory activity, inverse molecular docking, and acid dissociation constants of new naphthoquinone-thiazole hybrids. Bioorg Med Chem 2023; 95:117510. [PMID: 37926047 DOI: 10.1016/j.bmc.2023.117510] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Revised: 10/26/2023] [Accepted: 10/30/2023] [Indexed: 11/07/2023]
Abstract
Chronic Inflammation is associated with various types of diseases that involves pro-inflammatory cytokines like IL-6 and TNF-α. High costs and serious side effects of available anti-inflammatory/immunomodulatory drugs led us to design new compounds with promising anti-inflammatory activities. Many drugs and biologically important compounds involve naphthoquinone and thiazole moieties in their core structures. Thereby, here we report the synthesis, characterization and anti-inflammatory activities of new naphthoquinone thiazole hybrids by reaction of naphthoquinone acyl thioureas with various α-bromoketone derivatives. The position of NO2 group in one of the phenyl rings of naphthoquinone thiazole hybrids was changed while different substituents were introduced at the para position of the second phenyl ring. All compounds were tested for potential immunomodulatory effect. No inflammatory cytokines were observed in the absence of LPS stimulant. On the other hand, they had promising anti-inflammatory immunomodulatory activities by being able to decrease the production of the pro-inflammatory cytokines (TNF-α and IL-6) in the LPS-stimulated cells. In an effort to find the possible mechanism of action, several enzymes involved in signalling pathways that play critical roles in inflammatory responses were screened in silico. Subsequent to inverse molecular docking approach, PI3K was predicted be the potential target. The docked complexes of the most potent compounds 5g and 5i were subjected to molecular dynamics simulation to assess the binding stability of the igands with the putative target. Acid dissociation constants (pKa) of the products were also determined potentiometrically.
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Affiliation(s)
- Cagla Efeoglu
- Department of Analytical Chemistry, Faculty of Pharmacy, Mersin University, Mersin TR-33169, Türkiye
| | - Sena Taskin
- Department of Analytical Chemistry, Faculty of Pharmacy, Biruni University, İstanbul 34010, Türkiye
| | - Ozge Selcuk
- Department of Analytical Chemistry, Faculty of Pharmacy, Mersin University, Mersin TR-33169, Türkiye
| | - Begum Celik
- Department of Biotechnology, Faculty of Arts and Science, Mersin University, TR-33440 Mersin, Türkiye; Mersin University Biotechnology Research and Application Center, Mersin University, TR-33440 Mersin, Türkiye
| | - Ece Tumkaya
- Department of Biotechnology, Faculty of Arts and Science, Mersin University, TR-33440 Mersin, Türkiye; Mersin University Biotechnology Research and Application Center, Mersin University, TR-33440 Mersin, Türkiye
| | - Abdulilah Ece
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Biruni University, İstanbul 34010, Türkiye.
| | - Hayati Sari
- Department of Chemistry, Faculty of Science and Arts, Gaziosmanpasa University, 60250 Tokat, Türkiye
| | - Zeynel Seferoglu
- Department of Chemistry, Faculty of Science, Gazi University, TR-06560 Ankara, Türkiye
| | - Furkan Ayaz
- Department of Molecular Biology and Genetics, Faculty of Engineering and Natural Sciences, Biruni University, İstanbul 34010, Türkiye.
| | - Yahya Nural
- Department of Analytical Chemistry, Faculty of Pharmacy, Mersin University, Mersin TR-33169, Türkiye.
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Kashyap A, Nishil B, Thatikonda S. Experimental and numerical elucidation of the fate and transport of antibiotics in aquatic environment: A review. ENVIRONMENTAL MONITORING AND ASSESSMENT 2023; 195:942. [PMID: 37436551 DOI: 10.1007/s10661-023-11482-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2022] [Accepted: 06/08/2023] [Indexed: 07/13/2023]
Abstract
This review highlights various experimental and mathematical modeling strategies to investigate the fate and transport of antibiotics that elucidate antimicrobial selective pressure in aquatic environments. Globally, the residual antibiotic concentrations in effluents from bulk drug manufacturing industries were 30- and 1500-fold greater than values reported in municipal and hospital effluents, respectively. The antibiotic concentration from different effluents enters the waterbodies that usually get diluted as they go downstream and undergo various abiotic and biotic reactive processes. In aquatic systems, photolysis is the predominant process for antibiotic reduction in the water matrix, while hydrolysis and sorption are frequently reported in the sediment compartment. The rate of antibiotic reduction varies widely with influencing factors such as the chemical properties of the antibiotics and hydrodynamic conditions of river streams. Among all, tetracycline was found to more unstable (log Kow = - 0.62 to - 1.12) that can readily undergo photolysis and hydrolysis; whereas macrolides were more stable (log Kow = 3.06 to 4.02) that are prone to biodegradation. The processes like photolysis, hydrolysis, and biodegradation followed first-order reaction kinetics while the sorption followed a second-order kinetics for most antibiotic classes with reaction rates occurring in the decreasing order of Fluoroquinolones and Sulphonamides. The reports from various experiments on abiotic and biotic processes serve as input parameters for an integrated mathematical modeling to predict the fate of the antibiotics in the aquatic environment. Various mathematical models viz. Fugacity level IV, RSEMM, OTIS, GREAT-ER, SWAT, QWASI, and STREAM-EU are discussed for their potential capabilities. However, these models do not account for microscale interactions of the antibiotics and microbial community under real-field conditions. Also, the seasonal variations for contaminant concentrations that exert selective pressure for antimicrobial resistance has not been accounted. Addressing these aspects collectively is the key to exploring the emergence of antimicrobial resistance. Therefore, a comprehensive model involving antimicrobial resistance parameters like fitness cost, bacterial population dynamics, conjugation transfer efficiency, etc. is required to predict the fate of antibiotics.
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Affiliation(s)
- Arun Kashyap
- Environmental Engineering Division, Department of Civil Engineering, IIT Hyderabad, Kandi, Sangareddy, Telangana, 502285, India
| | - Benita Nishil
- Environmental Engineering Division, Department of Civil Engineering, IIT Hyderabad, Kandi, Sangareddy, Telangana, 502285, India
| | - Shashidhar Thatikonda
- Environmental Engineering Division, Department of Civil Engineering, IIT Hyderabad, Kandi, Sangareddy, Telangana, 502285, India.
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Ertano BY, Demir Y, Nural Y, Erdoğan O. Investigation of The Effect of Acylthiourea Derivatives on Diabetes‐Associated Enzymes. ChemistrySelect 2022. [DOI: 10.1002/slct.202204149] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Bükre Yaren Ertano
- Department of Molecular Biology and Genetics Faculty of Science Atatürk University Erzurum 25240 Turkey
- Department of Molecular Biology and Genetics Faculty of Science Atatürk University Erzurum 25240 Turkey
| | - Yeliz Demir
- Department of Pharmacy Services Nihat Delibalta Göle Vocational High School Ardahan University Ardahan 75700 Turkey
| | - Yahya Nural
- Department of Analytical Chemistry Faculty of Pharmacy Mersin University Mersin 33169 Turkey
| | - Orhan Erdoğan
- Department of Molecular Biology and Genetics Faculty of Science Atatürk University Erzurum 25240 Turkey
- Department of Molecular Biology and Genetics Faculty of Science Atatürk University Erzurum 25240 Turkey
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Nural Y, Ozdemir S, Yalcin MS, Demir B, Atabey H, Seferoglu Z, Ece A. New bis- and tetrakis-1,2,3-triazole derivatives: Synthesis, DNA cleavage, molecular docking, antimicrobial, antioxidant activity and acid dissociation constants. Bioorg Med Chem Lett 2022; 55:128453. [PMID: 34801684 DOI: 10.1016/j.bmcl.2021.128453] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2021] [Revised: 11/01/2021] [Accepted: 11/09/2021] [Indexed: 01/02/2023]
Abstract
In this study, a series of bis- and tetrakis-1,2,3-triazole derivatives were synthesized using copper-catalyzed azide-alkyne cycloaddition (CuAAC) click chemistry in 73-95% yield. The bis- and tetrakis-1,2,3-triazoles exhibited significant DNA cleavage activity while the tetrakis-1,2,3-triazole analog 6g completely degraded the plasmid DNA. Molecular docking simulations suggest that compound 6g acts as minor groove binder of DNA by binding through several noncovalent interactions with base pairs. All bis- and tetrakis-1,2,3-triazole derivatives were screened for antibacterial activity against E. coli, B. cereus, S. aureus, P. aeruginosa, E. hirae, L. pneumophila subsp. pneumophila strains and antifungal activity against microfungus C. albicans and C. tropicalis strains. Compound 4d exhibited the best antibacterial activity among bis-1,2,3-triazoles against E. coli and E. hirae, while 6c exhibited the best antibacterial activity among tetrakis-1,2,3-triazoles against E. hirae. Furthermore, the best antifungal activity against C. albicans and C. tropicalis was reported for the compound 5, while 6d displayed the best antifungal activity against C. tropicalis and C. albicans. Reasonable iron chelating activities and DPPH radical scavenging abilities were found for some of the compounds. Finally, the acid dissociation constants (pKa) of the bis-1,2,3-triazoles were also determined with the help of HYPERQUAD program using the data obtained from potentiometric titrations. The reported data here concludes that the bis- and tetrakis-1,2,3-triazoles are important cores that should be considered for further development of especially new anticancer agents acting through the DNA cleavage activity.
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Affiliation(s)
- Yahya Nural
- Department of Analytical Chemistry, Faculty of Pharmacy, Mersin University, Mersin 33169, Turkey; Advanced Technology, Research and Application Center, Mersin University, 33343 Mersin, Turkey.
| | - Sadin Ozdemir
- Food Processing Programme, Technical Science Vocational School, Mersin University, Mersin 33343, Turkey
| | - Mustafa Serkan Yalcin
- Department of Chemistry and Chemical Processing Technologies, Technical Science Vocational School, Mersin University, Mersin 33343, Turkey
| | - Bunyamin Demir
- Advanced Technology, Research and Application Center, Mersin University, 33343 Mersin, Turkey; Department of Mechanical Engineering, Faculty of Engineering, Mersin University, Mersin 33169, Turkey
| | - Hasan Atabey
- Mersin National Education Directorate, Department of Analytical Chemistry, Mersin, Turkey
| | - Zeynel Seferoglu
- Department of Chemistry, Faculty of Science, Gazi University, Yenimahalle, Ankara TR-06560, Turkey
| | - Abdulilah Ece
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Biruni University, Istanbul 34010, Turkey
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Nural Y, Ozdemir S, Yalcin MS, Demir B, Atabey H, Ece A, Seferoglu Z. Synthesis, Biological Evaluation, Molecular Docking, and Acid Dissociation Constant of New Bis‐1,2,3‐triazole Compounds. ChemistrySelect 2021. [DOI: 10.1002/slct.202101148] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Yahya Nural
- Department of Analytical Chemistry Faculty of Pharmacy Mersin University Mersin, TR 33169 Turkey
- Advanced Technology Research and Application Center Mersin University Mersin, TR 33343 Turkey
| | - Sadin Ozdemir
- Food Processing Programme Technical Science Vocational School Mersin University Mersin, TR 33343 Turkey
| | - Mustafa Serkan Yalcin
- Department of Chemistry and Chemical Processing Technologies Technical Science Vocational School Mersin University Mersin, TR 33343 Turkey
| | - Bunyamin Demir
- Advanced Technology Research and Application Center Mersin University Mersin, TR 33343 Turkey
- Department of Mechanical Engineering, orgDiv/>Faculty of Engineering Mersin University Mersin, TR 33169 Turkey
| | - Hasan Atabey
- Mersin National Education Directorate Department of Analytical Chemistry Mersin Turkey
| | - Abdulilah Ece
- Department of Phaarmaceutical Chemistry Faculty of Pharmacy Biruni University Istanbul 34010 Turkey
| | - Zeynel Seferoglu
- Department of Chemistry Faculty of Science Gazi University,Yenimahalle Ankara, TR 06560 Turkey
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Nural Y, Keleş E, Aydıner B, Seferoğlu N, Atabey H, Seferoğlu Z. New naphthoquinone-imidazole hybrids: Synthesis, anion recognition properties, DFT studies and acid dissociation constants. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2020.114855] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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Nural Y, Ozdemir S, Doluca O, Demir B, Yalcin MS, Atabey H, Kanat B, Erat S, Sari H, Seferoglu Z. Synthesis, biological properties, and acid dissociation constant of novel naphthoquinone–triazole hybrids. Bioorg Chem 2020; 105:104441. [DOI: 10.1016/j.bioorg.2020.104441] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2020] [Revised: 09/17/2020] [Accepted: 10/27/2020] [Indexed: 12/18/2022]
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Ince T, Serttas R, Demir B, Atabey H, Seferoglu N, Erdogan S, Sahin E, Erat S, Nural Y. Polysubstituted pyrrolidines linked to 1,2,3-triazoles: Synthesis, crystal structure, DFT studies, acid dissociation constant, drug-likeness, and anti-proliferative activity. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.128400] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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Mollanejad K, Asghari S, Jadidi K. Diastereoselective synthesis of pyrrolo[1, 2‐c]imidazoles using chiral thiohydantoins, malononitrile, and aldehydes and evaluation of their antioxidant and antibacterial activities. J Heterocycl Chem 2019. [DOI: 10.1002/jhet.3762] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Khadijeh Mollanejad
- Department of Organic Chemistry, Faculty of ChemistryUniversity of Mazandaran Babolsar Iran
| | - Sakineh Asghari
- Department of Organic Chemistry, Faculty of ChemistryUniversity of Mazandaran Babolsar Iran
- Nano and Biotechnology Research GroupUniversity of Mazandaran Babolsar Iran
| | - Khosrow Jadidi
- Department of ChemistryShahid Beheshti University Tehran Iran
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Jia H, Leng X, Lian P, Han Y, Wang Q, Wang S, Sun T, Liang Y, Huang P, Lv K. pH-Switchable IFT variations and emulsions based on the dynamic noncovalent surfactant/salt assembly at the water/oil interface. SOFT MATTER 2019; 15:5529-5536. [PMID: 31241648 DOI: 10.1039/c9sm00891h] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Additional HCl can facilely control the dynamic noncovalent interaction between anionic surfactant sodium dodecyl benzene sulfonate (SDBS) and additional organic matter, 4,4'-oxydianiline (ODA), at the water/oil interface. At low HCl concentration (ODA/HCl molar ratio (r) = 1 : 1.5, [ODA] = 250 mg L-1), the ODA+ ions effectively enhanced the SDBS ability to reduce the water/oil interfacial tension (IFT) by about two orders of magnitude, while the (SDBS)2/ODA2+ gemini-like surfactants could be constructed at a relatively high HCl concentration (r = 1 : 4, [ODA] = 250 mg L-1), which could largely reduce the IFT to 1.19 × 10-3 mN m-1. Molecular simulation was employed to explore the interfacial activity of ODAn+ (ODA+/ODA2+) ions and the SDBS/ODAn+ interaction. The control experiments used another three surfactants to verify the proposed model. The pH-switchable gradual protonation of amino groups in ODA molecules determined the SDBS/ODA interfacial assembly, which was responsible for the reversal of IFT variations and the related emulsion behaviors.
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Affiliation(s)
- Han Jia
- Key Laboratory of Unconventional Oil & Gas Development (China University of Petroleum (East China)), Ministry of Education, Qingdao, 266580, China. and Shandong Key Laboratory of Oilfield Chemistry, School of Petroleum Engineering, China University of Petroleum (East China), Qingdao, 266580, China
| | - Xu Leng
- Key Laboratory of Unconventional Oil & Gas Development (China University of Petroleum (East China)), Ministry of Education, Qingdao, 266580, China. and Shandong Key Laboratory of Oilfield Chemistry, School of Petroleum Engineering, China University of Petroleum (East China), Qingdao, 266580, China
| | - Peng Lian
- Key Laboratory of Unconventional Oil & Gas Development (China University of Petroleum (East China)), Ministry of Education, Qingdao, 266580, China. and Shandong Key Laboratory of Oilfield Chemistry, School of Petroleum Engineering, China University of Petroleum (East China), Qingdao, 266580, China
| | - Yugui Han
- Bohai Oilfield Research Institute, Tianjin Branch, CNOOC China Limited, Tianjin, 300459, China
| | - Qiuxia Wang
- Bohai Oilfield Research Institute, Tianjin Branch, CNOOC China Limited, Tianjin, 300459, China
| | - Shaoyan Wang
- Key Laboratory of Unconventional Oil & Gas Development (China University of Petroleum (East China)), Ministry of Education, Qingdao, 266580, China. and Shandong Key Laboratory of Oilfield Chemistry, School of Petroleum Engineering, China University of Petroleum (East China), Qingdao, 266580, China
| | - Tunan Sun
- Key Laboratory of Unconventional Oil & Gas Development (China University of Petroleum (East China)), Ministry of Education, Qingdao, 266580, China. and Shandong Key Laboratory of Oilfield Chemistry, School of Petroleum Engineering, China University of Petroleum (East China), Qingdao, 266580, China
| | - Yipu Liang
- Key Laboratory of Unconventional Oil & Gas Development (China University of Petroleum (East China)), Ministry of Education, Qingdao, 266580, China. and Shandong Key Laboratory of Oilfield Chemistry, School of Petroleum Engineering, China University of Petroleum (East China), Qingdao, 266580, China
| | - Pan Huang
- Key Laboratory of Unconventional Oil & Gas Development (China University of Petroleum (East China)), Ministry of Education, Qingdao, 266580, China. and Shandong Key Laboratory of Oilfield Chemistry, School of Petroleum Engineering, China University of Petroleum (East China), Qingdao, 266580, China
| | - Kaihe Lv
- Key Laboratory of Unconventional Oil & Gas Development (China University of Petroleum (East China)), Ministry of Education, Qingdao, 266580, China. and Shandong Key Laboratory of Oilfield Chemistry, School of Petroleum Engineering, China University of Petroleum (East China), Qingdao, 266580, China
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Devi P, Bishnoi A, Singh V. Synthesis and Biological Evaluation of Some Novel Claisen Products of 5‐Oxo‐1‐phenylpyrrolidine‐3‐carboxylic Acid as Antimicrobial and Antioxidant Agents. ChemistrySelect 2019. [DOI: 10.1002/slct.201803100] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
- Poornima Devi
- Department of ChemistryUniversity of Lucknow Lucknow 226007 India
| | - Abha Bishnoi
- Department of ChemistryUniversity of Lucknow Lucknow 226007 India
| | - Vineeta Singh
- Department of BiotechnologyInstitute of Engineering and Technology Lucknow- 226021 India
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Gumus I, Solmaz U, Binzet G, Keskin E, Arslan B, Arslan H. Supramolecular self-assembly of new thiourea derivatives directed by intermolecular hydrogen bonds and weak interactions: crystal structures and Hirshfeld surface analysis. RESEARCH ON CHEMICAL INTERMEDIATES 2018. [DOI: 10.1007/s11164-018-3596-5] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Nural Y. Synthesis, antimycobacterial activity, and acid dissociation constants of polyfunctionalized 3-[2-(pyrrolidin-1-yl)thiazole-5-carbonyl]-2H-chromen-2-one derivatives. MONATSHEFTE FUR CHEMIE 2018. [DOI: 10.1007/s00706-018-2250-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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