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Singh P, Singh A, Singh DK, Nath M. Applications of Clauson-Kaas Reaction in Organic Synthesis. CHEM REC 2024; 24:e202400112. [PMID: 39434495 DOI: 10.1002/tcr.202400112] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Revised: 08/10/2024] [Indexed: 10/23/2024]
Abstract
Pyrrole-embedded organic molecules received a considerable importance due to their numerous biological and material applications. Hence, several synthetic strategies have been devised for the construction of diverse pyrrole analogues over the years. Among these, the Clauson-Kaas reaction is one of the most widely used protocols for the synthesis of various N-substituted pyrroles. This review briefly describes the Clauson-Kaas reaction along with modifications and a detailed account on its applications in the various sectors of organic synthesis.
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Affiliation(s)
- Pargat Singh
- Department of Chemistry, Faculty of Science, University of Delhi, Delhi, 110007, India
| | - Abhijeet Singh
- Department of Chemistry, Faculty of Science, University of Delhi, Delhi, 110007, India
| | - Dileep Kumar Singh
- Department of Chemistry, Bipin Bihari College, Bundelkhand University, Jhansi, 284001, Uttar Pradesh, India
| | - Mahendra Nath
- Department of Chemistry, Faculty of Science, University of Delhi, Delhi, 110007, India
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Moreno-Suárez E, Avila-Acosta R, Sánchez-Ramírez K, Castillo JC, Macías MA. Crystallographic, spectroscopic and thermal studies of 1-(4-bromophenyl)-5-(2,5-dimethyl-1H-pyrrol-1-yl)-3-methyl-1H-pyrazole. Acta Crystallogr C Struct Chem 2023; 79:472-479. [PMID: 37874208 DOI: 10.1107/s2053229623009221] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Accepted: 10/19/2023] [Indexed: 10/25/2023] Open
Abstract
The new title pyrrole-pyrazole derivative, C16H16BrN3, was synthesized through a citric acid-catalyzed Paal-Knorr reaction between acetonylacetone and 1-(4-bromophenyl)-3-methyl-1H-pyrazol-5-amine under mild reaction conditions. This synthetic protocol is noteworthy for its utilization of stoichiometric amounts of the reactants, an ecofriendly solvent and a cost-effective, non-toxic and biodegradable organocatalyst. A comprehensive understanding of the molecular structure was gained through spectroscopic, thermal and X-ray crystallographic analyses. The crystal structure is characterized by weak interactions, where only C-H...π connections contribute to the hydrogen-bond contacts. The supramolecular assembly is controlled by dispersion forces. However, the energy frameworks demonstrate that these forces act in three dimensions, providing enough stability, as observed in TGA-DSC (thermogravimetric analysis-differential scanning calorimetry) studies.
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Affiliation(s)
- Erika Moreno-Suárez
- Disciplinary Elective V, Escuela de Ciencias Química, Universidad Pedagógica y Tecnológica de Colombia, Avenida Central del Norte 39-115, Tunja 150003, Colombia
| | - Rafael Avila-Acosta
- Disciplinary Elective V, Escuela de Ciencias Química, Universidad Pedagógica y Tecnológica de Colombia, Avenida Central del Norte 39-115, Tunja 150003, Colombia
| | - Karen Sánchez-Ramírez
- Disciplinary Elective V, Escuela de Ciencias Química, Universidad Pedagógica y Tecnológica de Colombia, Avenida Central del Norte 39-115, Tunja 150003, Colombia
| | - Juan Carlos Castillo
- Disciplinary Elective V, Escuela de Ciencias Química, Universidad Pedagógica y Tecnológica de Colombia, Avenida Central del Norte 39-115, Tunja 150003, Colombia
| | - Mario A Macías
- Crystallography and Chemistry of Materials, CrisQuimMat, Chemistry Department, Universidad de Los Andes, Cra. 1 No. 18A-12, Bogotá 111711, Colombia
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Recent Advances in Synthesis and Properties of Pyrazoles. CHEMISTRY 2022. [DOI: 10.3390/chemistry4030065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Pyrazole-containing compounds represent one of the most influential families of N-heterocycles due to their proven applicability and versatility as synthetic intermediates in preparing relevant chemicals in biological, physical-chemical, material science, and industrial fields. Therefore, synthesizing structurally diverse pyrazole derivatives is highly desirable, and various researchers continue to focus on preparing this functional scaffold and finding new and improved applications; this review highlights some of the most recent and strategic examples regarding the synthesis and properties of different pyrazole derivatives, mainly reported from 2017–present. The discussion involves strategically functionalized rings (i.e., amines, carbaldehydes, halides, etc.) and their use in forming various fused systems, predominantly bicyclic cores with 5:6 fusion taking advantage of our experience in this field and the more recent investigations of our research group.
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Fan W, Xiang S, Li Y, Zhang W, Guo S, Huang D. Iodine-Mediated Pyridine Ring Expansion for the Construction of Azepines. Org Lett 2022; 24:2075-2080. [PMID: 35285653 DOI: 10.1021/acs.orglett.2c00130] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
A synthesis of azepines by the expansion of pyridine rings promoted by iodine in air is reported. The scope of the method is demonstrated with 27 examples. Two iodinations are involved in the reaction, in which the second iodination leads to the opening of the six-membered ring.
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Affiliation(s)
- Weibin Fan
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, Fujian 350002, China.,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Shiqun Xiang
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, Fujian 350002, China
| | - Yinghua Li
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, Fujian 350002, China
| | - Wei Zhang
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, Fujian 350002, China
| | - Shiwei Guo
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, Fujian 350002, China.,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Deguang Huang
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, Fujian 350002, China
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Bucinsky L, Bortňák D, Gall M, Matúška J, Milata V, Pitoňák M, Štekláč M, Végh D, Zajaček D. Machine learning prediction of 3CLpro SARS-CoV-2 docking scores. Comput Biol Chem 2022; 98:107656. [PMID: 35288359 PMCID: PMC8881816 DOI: 10.1016/j.compbiolchem.2022.107656] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Revised: 02/23/2022] [Accepted: 02/24/2022] [Indexed: 12/14/2022]
Abstract
Molecular docking results of two training sets containing 866 and 8,696 compounds were used to train three different machine learning (ML) approaches. Neural network approaches according to Keras and TensorFlow libraries and the gradient boosted decision trees approach of XGBoost were used with DScribe’s Smooth Overlap of Atomic Positions molecular descriptors. In addition, neural networks using the SchNetPack library and descriptors were used. The ML performance was tested on three different sets, including compounds for future organic synthesis. The final evaluation of the ML predicted docking scores was based on the ZINC in vivo set, from which 1,200 compounds were randomly selected with respect to their size. The results obtained showed a consistent ML prediction capability of docking scores, and even though compounds with more than 60 atoms were found slightly overestimated they remain valid for a subsequent evaluation of their drug repurposing suitability.
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Raab J, Pelmus M, Buevich AV, Reibarkh M, Tischenko E, Frey M, Williamson RT, Crouch RC, Martin GE. Development of 19 F-detected 1,1-ADEQUATE for the characterization of polyfluorinated and perfluorinated compounds. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2021; 59:628-640. [PMID: 33486827 DOI: 10.1002/mrc.5134] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2020] [Accepted: 01/21/2021] [Indexed: 06/12/2023]
Abstract
Polyfluorinated and perfluorinated compounds in the environment are a growing health concern. 19 F-detected variants of commonly employed heteronuclear shift correlation experiments such as heteronuclear single quantum correlation (HSQC) and heteronuclear multiple bond correlation (HMBC) are available; 19 F-detected experiments that employ carbon-carbon homonuclear coupling, in contrast, have never been reported. Herein, we report the measurement of the 1 JCC and n JCC coupling constants of a simple perfluorinated phthalonitrile and the first demonstration of a 19 F-detected 1,1-ADEQUATE experiment.
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Affiliation(s)
- Jeffrey Raab
- Department of Chemistry & Biochemistry, Seton Hall University, South Orange, New Jersey, USA
| | - Marius Pelmus
- Department of Chemistry & Biochemistry, Seton Hall University, South Orange, New Jersey, USA
| | - Alexei V Buevich
- Analytical Research and Development, Merck and Co., Inc., Kenilworth, New Jersey, USA
| | - Mikhail Reibarkh
- Analytical Research and Development, Merck and Co., Inc., Kenilworth, New Jersey, USA
| | - Evgeny Tischenko
- Analytical Instruments, JEOL USA, Inc., Peabody, Massachusetts, USA
| | - Michael Frey
- Analytical Instruments, JEOL USA, Inc., Peabody, Massachusetts, USA
| | - R Thomas Williamson
- Department of Chemistry and Biochemistry, University of North Carolina Wilmington, Wilmington, North Carolina, USA
| | - Ronald C Crouch
- Analytical Instruments, JEOL USA, Inc., Peabody, Massachusetts, USA
| | - Gary E Martin
- Department of Chemistry & Biochemistry, Seton Hall University, South Orange, New Jersey, USA
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Bortňák D, Pecher D, Végh D, Breza M, Mikuš P, Milata V. Mass spectrometrical and quantum-chemical study of pentafluorophenylhydrazones. JOURNAL OF MASS SPECTROMETRY : JMS 2020; 55:e4540. [PMID: 33247509 DOI: 10.1002/jms.4540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Revised: 04/02/2020] [Accepted: 04/30/2020] [Indexed: 06/12/2023]
Abstract
Twenty-one pentafluorphenylhydrazones have been analyzed by means of tandem mass spectrometry (ESI MS/MS) conditions to compare their fragmentations with those ones obtained from quantum-chemical calculations of the hydrazone moiety depending on the substitution from the aldehyde site. The hydrazone N-N bond is disrupted under such conditions, and these results are in accordance with the facts that an electron-rich particle, such as an anion and or radical in a solution, can cause this disruption and simultaneous defluorination in para-position of the hydrazone part of the molecule.
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Affiliation(s)
- Dušan Bortňák
- Department of Organic Chemistry, Slovak Technical University, Radlinského 9, Bratislava, SK-812 37, Slovakia
| | - Daniel Pecher
- Toxicological and Antidoping Center, Faculty of Pharmacy, Comenius University in Bratislava, Odbojárov 10, Bratislava, SK-832 32, Slovakia
| | - Daniel Végh
- Department of Organic Chemistry, Slovak Technical University, Radlinského 9, Bratislava, SK-812 37, Slovakia
| | - Martin Breza
- Department of Physical Chemistry, Faculty of Chemical and Food Technology, Slovak Technical University, Radlinského 9, Bratislava, SK-812 37, Slovakia
| | - Peter Mikuš
- Department of Pharmaceutical Analysis and Nuclear Pharmacy, Faculty of Pharmacy, Comenius University in Bratislava, Odbojárov 10, Bratislava, SK-832 32, Slovakia
| | - Viktor Milata
- Department of Organic Chemistry, Slovak Technical University, Radlinského 9, Bratislava, SK-812 37, Slovakia
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Bortňák D, Milata V, Šofranko J, Végh D, Prousek J, Barbieriková Z, Breza M, Brezová V, Dvoranová D, Šoral M. Unexpected Cleavage of N‐N Bonds of Pentafluorophenylhydrazones – Formation of Nitriles by a Radical Fragmentation Reaction. ChemistrySelect 2020. [DOI: 10.1002/slct.202001055] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Dušan Bortňák
- Faculty of Chemical and Food TechnologySlovak University of Technology in Bratislava Radlinského 9, SK-812 37 Bratislava Slovakia
| | - Viktor Milata
- Faculty of Chemical and Food TechnologySlovak University of Technology in Bratislava Radlinského 9, SK-812 37 Bratislava Slovakia
| | - Jakub Šofranko
- Faculty of Chemical and Food TechnologySlovak University of Technology in Bratislava Radlinského 9, SK-812 37 Bratislava Slovakia
| | - Daniel Végh
- Faculty of Chemical and Food TechnologySlovak University of Technology in Bratislava Radlinského 9, SK-812 37 Bratislava Slovakia
| | - Josef Prousek
- Faculty of Chemical and Food TechnologySlovak University of Technology in Bratislava Radlinského 9, SK-812 37 Bratislava Slovakia
| | - Zuzana Barbieriková
- Faculty of Chemical and Food TechnologySlovak University of Technology in Bratislava Radlinského 9, SK-812 37 Bratislava Slovakia
| | - Martin Breza
- Faculty of Chemical and Food TechnologySlovak University of Technology in Bratislava Radlinského 9, SK-812 37 Bratislava Slovakia
| | - Vlasta Brezová
- Faculty of Chemical and Food TechnologySlovak University of Technology in Bratislava Radlinského 9, SK-812 37 Bratislava Slovakia
| | - Dana Dvoranová
- Faculty of Chemical and Food TechnologySlovak University of Technology in Bratislava Radlinského 9, SK-812 37 Bratislava Slovakia
| | - Michal Šoral
- Faculty of Chemical and Food TechnologySlovak University of Technology in Bratislava Radlinského 9, SK-812 37 Bratislava Slovakia
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Romo PE, Isaza JH, Insuasty B, Abonia R, del Crespo MP, Quiroga J. Synthesis of pyrazolo[3,4-b]azepines and their antioxidant and antibacterial studies. MONATSHEFTE FUR CHEMIE 2019. [DOI: 10.1007/s00706-019-02479-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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