Metyrapone-β-cyclodextrin supramolecular interactions inferred by complementary spectroscopic/spectrometric and computational studies

γ-Cyclodextrins as Supramolecular Reactors for the Three-component Aza-Darzens Reaction in Water

In recent decades, many efforts have been devoted to studying reactions catalyzed in nanoconfined spaces. The most impressive aspect of catalysis in nanoconfined spaces is that the reactivity of the molecules can be smartly driven to disobey classical behavior. A green and efficient three-component aza-Darzens (TCAD) reaction using a catalytic amount of γ-cyclodextrins (CDs) in water has been developed to synthesize N-phenylaziridines. CDs effectively performed this reaction in an environmentally friendly setting, achieving good yields. The same reaction was then performed using polymeric γ-CD such as a γ-cyclodextrin polymer crosslinked (GCDPC) with epichlorohydrin, a sponge-like macroporous γ-cyclodextrin-based cryogel (GCDC), and a γ-cyclodextrin-based hydrogel (GCDH). The homogeneous and heterogeneous catalyst recovery was then studied, and it was proved to be easily recycled several times without relevant activity loss. Water, as a unique and eco-friendly reaction medium, has been utilized for the first time, to the best of our knowledge, in this reaction. The inclusion of the reagents in CDs has been studied and rationalized by NMR spectroscopy experiments and molecular modeling calculations. The credit of the presented protocol includes good yields and catalyst reusability and precludes the use of organic solvents.

Green Efficient One-Pot Synthesis and Separation of Nitrones in Water Assisted by a Self-Assembled Nanoreactor

This article reports an alternative method for preparing nitrones using a tetrahedral capsule as a nanoreactor in water. Using the hydrophobic cavity of the capsule allowed us to reduce the reaction times and easily separate the nitrones from the reaction mixture, obtaining reaction yields equal or comparable to those obtained with the methods already reported. Furthermore, at the basis of this methodology, there is an eco-friendly approach carried out that can certainly be extended to other synthesis methods for the preparation of other substrates by exploiting various types of macrocyclic hosts, suitably designed and widely used in supramolecular chemistry.

Application of Molecular Dynamics Simulations in the Analysis of Cyclodextrin Complexes

Cyclodextrins (CDs) are highly respected for their ability to form inclusion complexes via host-guest noncovalent interactions and, thus, ensofance other molecular properties. Various molecular modeling methods have found their applications in the analysis of those complexes. However, as showed in this review, molecular dynamics (MD) simulations could provide the information unobtainable by any other means. It is therefore not surprising that published works on MD simulations used in this field have rapidly increased since the early 2010s. This review provides an overview of the successful applications of MD simulations in the studies on CD complexes. Information that is crucial for MD simulations, such as application of force fields, the length of the simulation, or solvent treatment method, are thoroughly discussed. Therefore, this work can serve as a guide to properly set up such calculations and analyze their results.

Intermolecular interactions between β-cyclodextrin and water

This study focused on demonstrating the intermolecular interactions between β-cyclodextrin and water, with the aim to better understand the transfer of small molecules to β-cyclodextrin. The intermolecular interaction strength between β-cyclodextrin and water was analyzed using different methods such as the dynamic adsorption of water, the TG-DSC of β-cyclodextrin and molecular modeling employing MM2 force field calculations. The experiments for the adsorption of water on β-cyclodextrin was aimed to systematically investigate the adsorption characteristics, such as adsorption capacity, adsorption rate, adsorption heat and activation energy, influenced by the adsorption temperature and vapor pressure of water. The results indicated that the water adsorption on β-cyclodextrin is an exothermic process. The hysteresis loop type in the adsorption isotherms at multiple temperatures indicated that water adsorption is not purely a traditional physical adsorption due to the existence of structure effects such as the cavity effect and hydrogen bonding. The activation energy during water adsorption was 7.4 kJ mol⁻¹. However, the activation energy during water desorption was in the range of 35–45 kJ mol⁻¹, which decreased with an increase in the amount of water adsorbed. This indicated that water adsorption is much easier than water desorption from β-cyclodextrin and that water desorption is more difficult with a small amount of adsorbed water compared with a large amount of adsorbed water. Subsequently, the obtained average intermolecular interaction strength between β-cyclodextrin and water under the experimental conditions was 67.5 kJ mol⁻¹ (water), which was verified by DSC.

This study focused on demonstrating the intermolecular interactions between β-cyclodextrin and water, with the aim to better understand the transfer of small molecules to β-cyclodextrin.

Construction of a sustainable/controlled-release nano-container of non-toxic corrosion inhibitors for the water-based siliconized film: Estimating the host-guest interactions/desorption of inclusion complexes of cerium acetylacetonate (CeA) with beta-cyclodextrin (β-CD) via detailed electronic/atomic-scale computer modeling and experimental methods

Utilization of the coatings with self-healing anti-corrosion activities is one of the most promising routes for the development of advanced anti-corrosion coatings. In the present work, the green/sustainable corrosion inhibitive compounds based on the cerium acetylacetonate (CeA) was loaded into a beta-cyclodextrin (β-CD) nano-container (with negligible hazardous impacts) and through combined computer modeling and experimental approaches, the host-guest interactions/desorptions of the inclusion complexes of CeA with beta-cyclodextrin (β-CD) were assessed. The inhibition performance of the β-CD-CeA inclusion complex was investigated by electrochemical and surface experiments in a saline solution (NaCl, 3.5 wt.%). The particles were analyzed by Raman, XRD, FT-IR, and UV-vis spectroscopies. Additionally, the thermal properties in the 30-600 °C temperature range were examined by employing TGA/DTG test, and via the ICP analysis, the concentration of the released inorganic compounds in the electrolyte was studied. Achievements demonstrated 24 ppm Ce element existence after introducing β-CD-CeA inclusion complexes (during 24 h) in NaCl 3.5 wt.% solution. The analysis of Tafel curves proved that the prepared β-CD-CeA inclusion complex could inhibit the metallic substrate corrosion following the mixed cathodic and anodic mechanisms. The EIS investigation disclosed about 82 % inhibition degree after 48 h of metal immersion in the solution containing β-CD-CeA extract. The EIS analysis clarified that the silane coating (SC) resistance was enhanced noticeably by introducing the β-CD-CeA particles into the SC matrix. Using detailed-level (i.e., electronic and atomic) computer modeling techniques applying density functional theory (DFT), Mote Carlo (MC) and molecular dynamics (MD), the active sites, and the adsorption propensity of CeA complexes over the steel-based metallic adsorbents were explored. These modelings evidenced the CeA complexes interfacial adsorption on the steel.

Functionalization of Single and Multi-Walled Carbon Nanotubes with Polypropylene Glycol Decorated Pyrrole for the Development of Doxorubicin Nano-Conveyors for Cancer Drug Delivery

A recently reported functionalization of single and multi-walled carbon nanotubes, based on a cycloaddition reaction between carbon nanotubes and a pyrrole derived compound, was exploited for the formation of a doxorubicin (DOX) stacked drug delivery system. The obtained supramolecular nano-conveyors were characterized by wide-angle X-ray diffraction (WAXD), thermogravimetric analysis (TGA), high-resolution transmission electron microscopy (HR-TEM), and Fourier transform infrared (FT-IR) spectroscopy. The supramolecular interactions were studied by molecular dynamics simulations and by monitoring the emission and the absorption spectra of DOX. Biological studies revealed that two of the synthesized nano-vectors are effectively able to get the drug into the studied cell lines and also to enhance the cell mortality of DOX at a much lower effective dose. This work reports the facile functionalization of carbon nanotubes exploiting the "pyrrole methodology" for the development of novel technological carbon-based drug delivery systems.

Cucurbit[7]uril as a catalytic nanoreactor for one-pot synthesis of isoxazolidines in water

The main objective of supramolecular chemistry is to mimic the macrosystems present in nature, a goal that fits perfectly with the green chemistry guidelines. The aim of our work is to use the hydrophobic cavity of cucurbit[7]uril (CB[7]) to mimic nature for performing different dehydration and cycloaddition reactions in water. The hydrophobic cavity of CB[7] made it possible to synthesize nitrones and isoxazolidines in a one-pot fashion using water as a reaction solvent. Substituted isoxazolidines were obtained from the cycloaddition of nitrones with various styrenes and cinnamates, under microwave irradiation, with a catalytic amount of CB[7], and a moderate increase in the formation of the trans adduct was observed, compared to the reaction being carried out in toluene. The mechanism of the reaction and the inclusion of reagents and products in the CB[7] cavity have been studied and rationalized by NMR spectroscopy, ESI-MS experiments, and molecular modeling calculations.

Physicochemical Characterization and Antioxidant Activity Evaluation of Idebenone/Hydroxypropyl-β-Cyclodextrin Inclusion Complex †

Idebenone (IDE) is an antioxidant drug active at the level of the central nervous system (CNS), whose poor water solubility limits its clinical application. An IDE/2-hydroxypropyl-β-cyclodextrin (IDE/HP-β-CD) inclusion complex was investigated by combining experimental methods and theoretical approaches. Furthermore, biological in vitro/ex vivo assays were performed. Phase solubility studies showed an A_L type diagram, suggesting the presence of a 1:1 complex with high solubility. Scanning electron microscopy (SEM) allowed us to detect the morphological changes upon complexation. The intermolecular interactions stabilizing the inclusion complex were experimentally characterized by exploring the complementarity of Fourier-transform infrared spectroscopy in attenuated total reflectance geometry (FTIR-ATR) with mid-infrared light, Fourier-transform near-infrared (FT-NIR) spectroscopy, and Raman spectroscopy. From the temperature evolution of the O–H stretching band of the complex, the average enthalpy ΔH_HB of the hydrogen bond scheme upon inclusion was obtained. Two-dimensional (2D) rotating frame Overhauser effect spectroscopy (ROESY) analysis and computational studies involving molecular modeling and molecular dynamics (MD) simulation demonstrated the inclusion of the quinone ring of IDE inside the CD ring. In vitro/ex vivo studies evidenced that complexation produces a protective effect of IDE against the H₂O₂-induced damage on human glioblastoma astrocytoma (U373) cells and increases IDE permeation through the excised bovine nasal mucosa.

Mass Spectrometry as a Complementary Approach for Noncovalently Bound Complexes Based on Cyclodextrins

An important and well-designed solution to overcome some of the problems associated with new drugs is provided by the molecular encapsulation of the drugs in the cyclodextrins (CDs) cavity, yielding corresponding inclusion complexes (ICs). These types of non-covalent complexes are of current interest to the pharmaceutical industry, as they improve the solubility, stability and bioavailability of the guest molecules. This review highlights several methods for cyclodextrin ICs preparation and characterization, focusing mostly on the mass spectrometry (MS) studies that have been used for the detection of noncovalent interactions of CDs inclusion complexes and binding selectivity of guest molecules with CDs. Furthermore, the MS investigations of several ICs of the CD with antifungal, antioxidants or fluorescent dyes are presented in greater details, pointing out the difficulties overcome in the analysis of this type of compounds.

FABP4 inhibitors 3D-QSAR model and isosteric replacement of BMS309403 datasets

The data have been obtained from FABP4 inhibitor molecules previously published. The 120 compounds were used to build a 3D-QSAR model. The development of the QSAR model has been undertaken with the use of Forge software using the PM3 optimized structure and the experimental IC₅₀ of each compound. The QSAR model was also employed to predict the activity of 3000 new isosteric derivatives of BMS309403. The isosteric replacement was also validated by the synthesis and the biological screening of three new compounds reported in the related research article “3D-QSAR assisted identification of FABP4 inhibitors: An effective scaffold hopping analysis/QSAR evaluation” (Floresta et al., 2019).