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de Almeida LR, Aguiar AN, da Anunciação ABRM, d’Oliveira GDC, Vaz WF, Custódio JMF, Pérez CN, Napolitano HB. Three Dihydroquinolin-4-one Derivatives as Potential Biodiesel Additives: From the Molecular Structure to Machine Learning Approach. ACS OMEGA 2024; 9:49188-49204. [PMID: 39713672 PMCID: PMC11656225 DOI: 10.1021/acsomega.4c05742] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/19/2024] [Revised: 11/18/2024] [Accepted: 11/25/2024] [Indexed: 12/24/2024]
Abstract
Biodiesel offers an alternative to fossil fuels, primarily because it is derived from renewable sources, with the potential to mitigate issues such as pollutant and greenhouse gas emissions, resource scarcity, and the market instability of petroleum derivatives. However, lower durability and stability pose challenges. To address this, researchers worldwide are exploring technologies that employ specific molecules to slow down biodiesel's oxidation process, thereby preserving its key physicochemical properties. This study investigates heterocyclic dihydroquinolinone derivatives as potential additives to enhance the oxidative stability of diesel-biodiesel blends. Comprehensive structural and computational analyses were carried out by density functional theory to investigate the reactivity aspects of these compounds as potential additive candidates. The supramolecular arrangements were predominantly stabilized by weak molecular interactions, such as C-H···O and C-H···π, which are associated with antioxidant and antibacterial properties. We demonstrate that these groups can act as electron-donating or electron-withdrawing substituents. We explored frontier molecular orbitals, which provide insights into chemical reactivity, acidity, basicity, and the best oxidizing and reducing agents. Finally, the molecular chemical potential maps indicate the nucleophilic and electrophilic regions and the Fukui indices show the sites of nucleophilic, electrophilic, and radical attacks. This comprehensive study paves the way to understanding how dihydroquinolinone-based compounds serve as alternatives for fuel additives.
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Affiliation(s)
- Leonardo R. de Almeida
- Grupo
de Química Teórica e Estrutural de Anápolis, Universidade Estadual de Goiás, 75132-903 Anápolis, GO, Brasil
| | - Antônio
S. N. Aguiar
- Grupo
de Química Teórica e Estrutural de Anápolis, Universidade Estadual de Goiás, 75132-903 Anápolis, GO, Brasil
| | - Alex B. R. M. da Anunciação
- Grupo
de Química Teórica e Estrutural de Anápolis, Universidade Estadual de Goiás, 75132-903 Anápolis, GO, Brasil
| | | | - Wesley F. Vaz
- Instituto
Federal de Educação, Ciência
e Tecnologia de Mato Grosso, 78466586 Lucas do Rio Verde, MT, Brasil
| | - Jean M. F. Custódio
- Instituto
de Química, Universidade Federal
de Goiás, 74690-900 Goiânia, GO, Brasil
| | - Caridad N. Pérez
- Instituto
de Química, Universidade Federal
de Goiás, 74690-900 Goiânia, GO, Brasil
| | - Hamilton B. Napolitano
- Grupo
de Química Teórica e Estrutural de Anápolis, Universidade Estadual de Goiás, 75132-903 Anápolis, GO, Brasil
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2
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Anandhi G, Iyapparaja M. Systematic approaches to machine learning models for predicting pesticide toxicity. Heliyon 2024; 10:e28752. [PMID: 38576573 PMCID: PMC10990867 DOI: 10.1016/j.heliyon.2024.e28752] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2023] [Revised: 03/13/2024] [Accepted: 03/24/2024] [Indexed: 04/06/2024] Open
Abstract
Pesticides play an important role in modern agriculture by protecting crops from pests and diseases. However, the negative consequences of pesticides, such as environmental contamination and adverse effects on human and ecological health, underscore the importance of accurate toxicity predictions. To address this issue, artificial intelligence models have emerged as valuable methods for predicting the toxicity of organic compounds. In this review article, we explore the application of machine learning (ML) for pesticide toxicity prediction. This review provides a detailed summary of recent developments, prediction models, and datasets used for pesticide toxicity prediction. In this analysis, we compared the results of several algorithms that predict the harmfulness of various classes of pesticides. Furthermore, this review article identified emerging trends and areas for future direction, showcasing the transformative potential of machine learning in promoting safer pesticide usage and sustainable agriculture.
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Affiliation(s)
- Ganesan Anandhi
- Department of Smart Computing, School of Computer Science Engineering and Information Systems, Vellore Institute of Technology, Vellore 632014, Tamil Nadu, India
| | - M. Iyapparaja
- Department of Smart Computing, School of Computer Science Engineering and Information Systems, Vellore Institute of Technology, Vellore 632014, Tamil Nadu, India
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3
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Yang Y, Zhong J, Shen S, Huang J, Hong Y, Qu X, Chen Q, Niu B. Application and Progress of Machine Learning in Pesticide Hazard and Risk Assessment. Med Chem 2024; 20:2-16. [PMID: 37038674 DOI: 10.2174/1573406419666230406091759] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2022] [Revised: 01/10/2023] [Accepted: 01/23/2023] [Indexed: 04/12/2023]
Abstract
Long-term exposure to pesticides is associated with the incidence of cancer. With the exponential increase in the number of new pesticides being synthesized, it becomes more and more important to evaluate the toxicity of pesticides by means of simulated calculations. Based on existing data, machine learning methods can train and model the predictions of the effects of novel pesticides, which have limited available data. Combined with other technologies, this can aid the synthesis of new pesticides with specific active structures, detect pesticide residues, and identify their tolerable exposure levels. This article mainly discusses support vector machines, linear discriminant analysis, decision trees, partial least squares, and algorithms based on feedforward neural networks in machine learning. It is envisaged that this article will provide scientists and users with a better understanding of machine learning and its application prospects in pesticide toxicity assessment.
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Affiliation(s)
- Yunfeng Yang
- School of life Science, Shanghai University, 99 Shangda Road, Shanghai, 200444, China
| | - Junjie Zhong
- School of life Science, Shanghai University, 99 Shangda Road, Shanghai, 200444, China
| | - Songyu Shen
- School of life Science, Shanghai University, 99 Shangda Road, Shanghai, 200444, China
| | - Jiajun Huang
- School of life Science, Shanghai University, 99 Shangda Road, Shanghai, 200444, China
| | - Yihan Hong
- School of life Science, Shanghai University, 99 Shangda Road, Shanghai, 200444, China
| | - Xiaosheng Qu
- National Engineering Laboratory of Southwest Endangered Medicinal Resources Development, Guangxi Botanical Garden of Medicinal Plants, Goang Xi, China
| | - Qin Chen
- School of life Science, Shanghai University, 99 Shangda Road, Shanghai, 200444, China
| | - Bing Niu
- School of life Science, Shanghai University, 99 Shangda Road, Shanghai, 200444, China
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4
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Salam HAAE, Mohamed GG, Zayed EM. Synthesis, spectroscopic characterization, biological application and molecular docking studies of some transition metal complexes of isophthalamide ligand. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2022.134231] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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5
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Tao X, Yang R, Xiao Y, Liao L, Xiao X, Nie C. Complexation and enantioselectivity of novel bridge-like uranyl- 2-((1Z,9Z)-9-(2-Hydroxyphenyl)-3,5,6,8-tetrahydrobenzo[ h][1,4,7,10] dioxadiazacyclododecin-2-yl)-5-methoxyphenol with chiral organophosphorus pesticide enantiomers of R/S-malathions. ENVIRONMENTAL TECHNOLOGY 2022; 43:3378-3389. [PMID: 33886435 DOI: 10.1080/09593330.2021.1921055] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2021] [Accepted: 04/16/2021] [Indexed: 06/12/2023]
Abstract
Designing new uranyl complexes with enantioselectivity is of great significance for the identification and separation of enantiomers of chiral pesticides. In this paper, a new asymmetric rigid uranyl-2-((1Z,9Z)-9-(2-Hydroxyphenyl)-3,5,6,8-tetrahydrobenzo[h][1,4,7,10] dioxadiaza-cyclododecin-2-yl)-5-methoxyphenol(Uranyl-HTDM) was designed, we used Uranyl-HTDM as a receptor to selectively coordinate with the guests of the chiral organophosphorus pesticide R/S-malathions(R/S-MLTs) to explore the receptor's enatioselectivity recognition of the chiral guests of R/S-MLTs. Density functional theory (DFT) method was used to comprehensively study the complexation mode of the receptor with enantiomers. The results showed that the U of Uranyl-HTDM could coordinate with both the thiophosphoryl sulfur and carbonyl oxygens of R/S-MLTs in different environments, respectively. The thermodynamics calculations further indicated that the receptor could selectively recognize the thiophosphoryl sulfur and carbonyl oxygen atoms of R/S-malathions, and the complexation abilities of Uranyl-HTDM to the R/S-malathions under different solvents were not the same. The smaller the polarity of solvents, the stronger the complexation ability of Uranyl-HTDM with R-malathion, toluene was an ideal solvent with large △G change and enatioselectivity coefficient of 99.55%. The study provides useful references for the design of new uranyl-salophens and for the experimental study on the molecular recognition of chiral organophosphorus pesticides.
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Affiliation(s)
- Xuebing Tao
- School of Chemistry and Chemical Engineering, University of South China, Hengyang, People's Republic of China
- Key Laboratory of Hunan Province for Design and Application of Natural Actinide Complexes, Hengyang, People's Republic of China
| | - Rong Yang
- School of Chemistry and Chemical Engineering, University of South China, Hengyang, People's Republic of China
- Key Laboratory of Hunan Province for Design and Application of Natural Actinide Complexes, Hengyang, People's Republic of China
| | - Yang Xiao
- School of Chemistry and Chemical Engineering, University of South China, Hengyang, People's Republic of China
- Key Laboratory of Hunan Province for Design and Application of Natural Actinide Complexes, Hengyang, People's Republic of China
| | - Lifu Liao
- School of Chemistry and Chemical Engineering, University of South China, Hengyang, People's Republic of China
| | - Xilin Xiao
- School of Chemistry and Chemical Engineering, University of South China, Hengyang, People's Republic of China
| | - Changming Nie
- School of Chemistry and Chemical Engineering, University of South China, Hengyang, People's Republic of China
- Key Laboratory of Hunan Province for Design and Application of Natural Actinide Complexes, Hengyang, People's Republic of China
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6
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A new quinolinone-chalcone hybrid with potential antibacterial and herbicidal properties using in silico approaches. J Mol Model 2022; 28:176. [PMID: 35652956 DOI: 10.1007/s00894-022-05140-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Accepted: 04/25/2022] [Indexed: 01/28/2023]
Abstract
Quinolinone-chalcones are hybrid compounds consisting of chalcone and quinolone moieties with biological activity related to their hybrid structure. This work seeks to describe the structural and theoretical parameters related to the physicochemical properties and biological activity of a new quinolinone-chalcone. The synthesis, structural characterization by X-ray diffraction, molecular topology by Hirshfeld surfaces and QTAIM, molecular electronic calculations, and pharmacophore analysis were described. The weak interactions C-H…O, C-H…π, and C-H…Br were responsible for crystal growth and stabilized the crystalline state. The DFT analysis shows that the sulfonamide group region is susceptible to observed interactions, and the frontier molecular orbitals indicate high kinetic stability. Also, pharmacophore analysis revealed potential antibacterial and herbicidal activity; by docking within the active site of TtgR, a transcription regulator for the efflux pump TtgABC from the highly resistant Pseudomonas putida (P. putida) strain DOT-TIE, we showed that the activation of TtgR relies upon the binding of aromatic-harboring compounds, which plays a crucial role in bacterial evasion. In this context, a new quinolinone-chalcone has a higher binding affinity than tetracycline, which suggests it might be a better effector for TtgR.
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7
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Wu YP, Wang Y, Li JH, Li RH, Wang J, Li SX, Gao XY, Dong L, Li AQ. Design, synthesis, herbicidal activity, in vivo enzyme activity evaluation and molecular docking study of acylthiourea derivatives as novel acetohydroxyacid synthase inhibitor. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130627] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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8
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Vaz WF, Neves BJ, Custodio JM, Silva LL, D'Oliveira GD, Lemes JA, Lacerda BF, Santos SX, Perez CN, Napolitano HB. In silico-driven identification and structural analysis of nitrodihydroquinolinone pesticide candidates with antifungal activity. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129326] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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9
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Gilbert EPK, Edwin L. A Review on Prediction Models for Pesticide Use, Transmission, and Its Impacts. REVIEWS OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY 2021; 257:37-68. [PMID: 33932184 DOI: 10.1007/398_2020_64] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The lure of increased productivity and crop yield has caused the imprudent use of pesticides in great quantity that has unfavorably affected environmental health. Pesticides are chemicals intended for avoiding, eliminating, and mitigating any pests that affect the crop. Lack of awareness, improper management, and negligent disposal of pesticide containers have led to the permeation of pesticide residues into the food chain and other environmental pathways, leading to environmental degradation. Sufficient steps must be undertaken at various levels to monitor and ensure judicious use of pesticides. Development of prediction models for optimum use of pesticides, pesticide management, and their impact would be of great help in monitoring and controlling the ill effects of excessive use of pesticides. This paper aims to present an exhaustive review of the prediction models developed and modeling strategies used to optimize the use of pesticides.
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Affiliation(s)
- Edwin Prem Kumar Gilbert
- Department of Information Technology, Sri Krishna College of Engineering and Technology, Coimbatore, Tamil Nadu, India.
| | - Lydia Edwin
- Department of Mechatronics Engineering, Sri Krishna College of Engineering and Technology, Coimbatore, Tamil Nadu, India
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10
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Vaz WF, Michelini LJ, Oliveira GAR, Lião LM, Perez CN, Oliver AG, Napolitano HB. Structural comparison of five new halogenated dihydroquinoline-4(1 H)-ones. J Mol Struct 2020; 1219:128559. [PMID: 32536721 PMCID: PMC7264041 DOI: 10.1016/j.molstruc.2020.128559] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2020] [Revised: 05/16/2020] [Accepted: 05/28/2020] [Indexed: 11/28/2022]
Abstract
Compounds with dihydroquinoline-4(1H)-one nuclei have been reported in the literature for being important in the development of medicines due to their broad spectrum of activities. In this way, the structural knowledge of this class becomes relevant for obtaining new materials with desired biological properties. This study presents the structural elucidation of five halogenated dihydroquinolines, as well as the discussion about the effect on the molecular conformation of the type and position of halogen atom on aromatic rings. Compounds I and IV differ in halogen substitution on 2-phenyl ring, while compounds III and V differ in halogen substitution on the benzylidene ring. Moreover, compound II has a para-substituted 2-phenyl ring in their molecular structure. The crystal packing of all five molecules is mainly ruled by C–H⋯O and C–H···halogen interactions that form dimers and chains. The shift in position and the kind of the halogen in ring C shows a starring role in the conformation of the studied compounds, and the packaging of these compounds is more susceptible to variations when the halogen position changes. Five dihydroquinoline-4(1H)-ones have been synthesized by varying the halogenated substituents. Different substituents lead to distinct number of molecules at asymmetric unit. The Molecular packing is stabilized by C–H⋯O and C–H···Halogen hydrogen bonds. The change in position and the halogen atom attached in ring C play a significant role in the conformation.
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Affiliation(s)
- Wesley F Vaz
- Ciências Exatas e Tecnológicas, Universidade Estadual de Goiás, Anápolis, GO, 75001-970, Brazil.,Instituto Federal de Educação, Ciência e Tecnologia de Mato Grosso, Lucas do Rio Verde, MT, 78455-000, Brazil
| | - Lidiane J Michelini
- Instituto de Química, Universidade Federal de Goiás, Goiânia, GO, 74690-900, Brazil
| | - Gerlon A R Oliveira
- Instituto de Química, Universidade Federal de Goiás, Goiânia, GO, 74690-900, Brazil
| | - Luciano M Lião
- Instituto de Química, Universidade Federal de Goiás, Goiânia, GO, 74690-900, Brazil
| | - Caridad N Perez
- Instituto de Química, Universidade Federal de Goiás, Goiânia, GO, 74690-900, Brazil
| | - Allen G Oliver
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, 46556, USA
| | - Hamilton B Napolitano
- Ciências Exatas e Tecnológicas, Universidade Estadual de Goiás, Anápolis, GO, 75001-970, Brazil.,Laboratório de Novos Materiais, Centro Universitário de Anápolis, Anápolis, GO, 75083-515, Brazil
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11
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Santos DBD, Moreira-Filho JT, Melo ADO, Lemes JA, Damacena Silva L, Rocha TL, Andrade CH, Neves BJ, Bezerra JCB. In silico-driven identification of novel molluscicides effective against Biomphalaria glabrata (Say, 1818). NEW J CHEM 2020. [DOI: 10.1039/d0nj03314f] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Schistosomiasis control in endemic areas depends on several factors, including mass drug delivery programs and interrupting the transmission of disease by controlling the intermediate host snails in the freshwater ecosystem using molluscicides.
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Affiliation(s)
- Daniela Braz dos Santos
- Laboratory for Studies of the Host-parasite Relationship
- Instituto de Patologia Tropical e Saúde Pública
- Universidade Federal de Goiás
- Goiânia
- Brazil
| | - José Teófilo Moreira-Filho
- Laboratory for Studies of the Host-parasite Relationship
- Instituto de Patologia Tropical e Saúde Pública
- Universidade Federal de Goiás
- Goiânia
- Brazil
| | | | - Josiel Araújo Lemes
- Laboratory of Cheminformatics
- Centro Universitário de Anápolis – UniEVANGÉLICA
- Anápolis
- Brazil
| | | | - Thiago Lopes Rocha
- Laboratory of Environmental Biotechnology and Ecotoxicology
- Instituto de Patologia Tropical e Saúde Pública
- Universidade Federal de Goiás
- Goiânia
- Brazil
| | - Carolina Horta Andrade
- LabMol – Laboratory for Molecular Modeling and Drug Design
- Faculdade de Farmácia
- Universidade Federal de Goiás
- Goiânia
- Brazil
| | - Bruno Junior Neves
- LabMol – Laboratory for Molecular Modeling and Drug Design
- Faculdade de Farmácia
- Universidade Federal de Goiás
- Goiânia
- Brazil
| | - José Clecildo Barreto Bezerra
- Laboratory for Studies of the Host-parasite Relationship
- Instituto de Patologia Tropical e Saúde Pública
- Universidade Federal de Goiás
- Goiânia
- Brazil
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