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Schröter M, Paulsen O, Bullmore ET. Micro-connectomics: probing the organization of neuronal networks at the cellular scale. Nat Rev Neurosci 2017; 18:131-146. [PMID: 28148956 DOI: 10.1038/nrn.2016.182] [Citation(s) in RCA: 66] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Defining the organizational principles of neuronal networks at the cellular scale, or micro-connectomics, is a key challenge of modern neuroscience. In this Review, we focus on graph theoretical parameters of micro-connectome topology, often informed by economical principles that conceptually originated with Ramón y Cajal's conservation laws. First, we summarize results from studies in intact small organisms and in samples from larger nervous systems. We then evaluate the evidence for an economical trade-off between biological cost and functional value in the organization of neuronal networks. Various results suggest that many aspects of neuronal network organization are indeed the outcome of competition between these two fundamental selection pressures.
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Affiliation(s)
- Manuel Schröter
- Department of Psychiatry and Behavioural and Clinical Neuroscience Institute, University of Cambridge, Cambridge Biomedical Campus, Cambridge CB2 0SZ, UK.,Department of Biosystems Science and Engineering, Bio Engineering Laboratory, ETH Zurich, Mattenstrasse 26, Basel CH-4058, Switzerland
| | - Ole Paulsen
- Department of Physiology, Development and Neuroscience, University of Cambridge, Physiological Laboratory, Downing Street, Cambridge CB2 3EG, UK
| | - Edward T Bullmore
- Department of Psychiatry and Behavioural and Clinical Neuroscience Institute, University of Cambridge, Cambridge Biomedical Campus, Cambridge CB2 0SZ, UK.,ImmunoPsychiatry, Immuno-Inflammation Therapeutic Area Unit, GlaxoSmithKline R&D, Stevenage SG1 2NY, UK.,Cambridgeshire and Peterborough NHS Foundation Trust, Cambridge Road, Fulbourn, Cambridge CB21 5HH, UK
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Carrillo-Medina JL, Latorre R. Implementing Signature Neural Networks with Spiking Neurons. Front Comput Neurosci 2016; 10:132. [PMID: 28066221 PMCID: PMC5167754 DOI: 10.3389/fncom.2016.00132] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2016] [Accepted: 11/30/2016] [Indexed: 11/17/2022] Open
Abstract
Spiking Neural Networks constitute the most promising approach to develop realistic Artificial Neural Networks (ANNs). Unlike traditional firing rate-based paradigms, information coding in spiking models is based on the precise timing of individual spikes. It has been demonstrated that spiking ANNs can be successfully and efficiently applied to multiple realistic problems solvable with traditional strategies (e.g., data classification or pattern recognition). In recent years, major breakthroughs in neuroscience research have discovered new relevant computational principles in different living neural systems. Could ANNs benefit from some of these recent findings providing novel elements of inspiration? This is an intriguing question for the research community and the development of spiking ANNs including novel bio-inspired information coding and processing strategies is gaining attention. From this perspective, in this work, we adapt the core concepts of the recently proposed Signature Neural Network paradigm—i.e., neural signatures to identify each unit in the network, local information contextualization during the processing, and multicoding strategies for information propagation regarding the origin and the content of the data—to be employed in a spiking neural network. To the best of our knowledge, none of these mechanisms have been used yet in the context of ANNs of spiking neurons. This paper provides a proof-of-concept for their applicability in such networks. Computer simulations show that a simple network model like the discussed here exhibits complex self-organizing properties. The combination of multiple simultaneous encoding schemes allows the network to generate coexisting spatio-temporal patterns of activity encoding information in different spatio-temporal spaces. As a function of the network and/or intra-unit parameters shaping the corresponding encoding modality, different forms of competition among the evoked patterns can emerge even in the absence of inhibitory connections. These parameters also modulate the memory capabilities of the network. The dynamical modes observed in the different informational dimensions in a given moment are independent and they only depend on the parameters shaping the information processing in this dimension. In view of these results, we argue that plasticity mechanisms inside individual cells and multicoding strategies can provide additional computational properties to spiking neural networks, which could enhance their capacity and performance in a wide variety of real-world tasks.
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Affiliation(s)
- José Luis Carrillo-Medina
- Departamento de Eléctrica y Electrónica, Universidad de las Fuerzas Armadas - ESPE Sangolquí, Ecuador
| | - Roberto Latorre
- Grupo de Neurocomputación Biológica, Dpto. de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid Madrid, Spain
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Gong Y, Wang B, Xie H. Spike-timing-dependent plasticity enhanced synchronization transitions induced by autapses in adaptive Newman-Watts neuronal networks. Biosystems 2016; 150:132-137. [PMID: 27666636 DOI: 10.1016/j.biosystems.2016.09.006] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2016] [Revised: 07/19/2016] [Accepted: 09/21/2016] [Indexed: 11/16/2022]
Abstract
In this paper, we numerically study the effect of spike-timing-dependent plasticity (STDP) on synchronization transitions induced by autaptic activity in adaptive Newman-Watts Hodgkin-Huxley neuron networks. It is found that synchronization transitions induced by autaptic delay vary with the adjusting rate Ap of STDP and become strongest at a certain Ap value, and the Ap value increases when network randomness or network size increases. It is also found that the synchronization transitions induced by autaptic delay become strongest at a certain network randomness and network size, and the values increase and related synchronization transitions are enhanced when Ap increases. These results show that there is optimal STDP that can enhance the synchronization transitions induced by autaptic delay in the adaptive neuronal networks. These findings provide a new insight into the roles of STDP and autapses for the information transmission in neural systems.
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Affiliation(s)
- Yubing Gong
- School of Physics and Optoelectronic Engineering, Ludong University, Yantai, Shandong 264025, China.
| | - Baoying Wang
- Library, Ludong University, Yantai, Shandong 264025, China
| | - Huijuan Xie
- School of Physics and Optoelectronic Engineering, Ludong University, Yantai, Shandong 264025, China
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Yu H, Guo X, Wang J, Deng B, Wei X. Effects of spike-time-dependent plasticity on the stochastic resonance of small-world neuronal networks. CHAOS (WOODBURY, N.Y.) 2014; 24:033125. [PMID: 25273205 DOI: 10.1063/1.4893773] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
The phenomenon of stochastic resonance in Newman-Watts small-world neuronal networks is investigated when the strength of synaptic connections between neurons is adaptively adjusted by spike-time-dependent plasticity (STDP). It is shown that irrespective of the synaptic connectivity is fixed or adaptive, the phenomenon of stochastic resonance occurs. The efficiency of network stochastic resonance can be largely enhanced by STDP in the coupling process. Particularly, the resonance for adaptive coupling can reach a much larger value than that for fixed one when the noise intensity is small or intermediate. STDP with dominant depression and small temporal window ratio is more efficient for the transmission of weak external signal in small-world neuronal networks. In addition, we demonstrate that the effect of stochastic resonance can be further improved via fine-tuning of the average coupling strength of the adaptive network. Furthermore, the small-world topology can significantly affect stochastic resonance of excitable neuronal networks. It is found that there exists an optimal probability of adding links by which the noise-induced transmission of weak periodic signal peaks.
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Affiliation(s)
- Haitao Yu
- School of Electrical Engineering and Automation, Tianjin University, Tianjin 300072, People's Republic of China
| | - Xinmeng Guo
- School of Electrical Engineering and Automation, Tianjin University, Tianjin 300072, People's Republic of China
| | - Jiang Wang
- School of Electrical Engineering and Automation, Tianjin University, Tianjin 300072, People's Republic of China
| | - Bin Deng
- School of Electrical Engineering and Automation, Tianjin University, Tianjin 300072, People's Republic of China
| | - Xile Wei
- School of Electrical Engineering and Automation, Tianjin University, Tianjin 300072, People's Republic of China
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Davies S, Galluppi F, Rast AD, Furber SB. A forecast-based STDP rule suitable for neuromorphic implementation. Neural Netw 2012; 32:3-14. [PMID: 22386500 DOI: 10.1016/j.neunet.2012.02.018] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2011] [Revised: 01/15/2012] [Accepted: 02/07/2012] [Indexed: 11/17/2022]
Abstract
Artificial neural networks increasingly involve spiking dynamics to permit greater computational efficiency. This becomes especially attractive for on-chip implementation using dedicated neuromorphic hardware. However, both spiking neural networks and neuromorphic hardware have historically found difficulties in implementing efficient, effective learning rules. The best-known spiking neural network learning paradigm is Spike Timing Dependent Plasticity (STDP) which adjusts the strength of a connection in response to the time difference between the pre- and post-synaptic spikes. Approaches that relate learning features to the membrane potential of the post-synaptic neuron have emerged as possible alternatives to the more common STDP rule, with various implementations and approximations. Here we use a new type of neuromorphic hardware, SpiNNaker, which represents the flexible "neuromimetic" architecture, to demonstrate a new approach to this problem. Based on the standard STDP algorithm with modifications and approximations, a new rule, called STDP TTS (Time-To-Spike) relates the membrane potential with the Long Term Potentiation (LTP) part of the basic STDP rule. Meanwhile, we use the standard STDP rule for the Long Term Depression (LTD) part of the algorithm. We show that on the basis of the membrane potential it is possible to make a statistical prediction of the time needed by the neuron to reach the threshold, and therefore the LTP part of the STDP algorithm can be triggered when the neuron receives a spike. In our system these approximations allow efficient memory access, reducing the overall computational time and the memory bandwidth required. The improvements here presented are significant for real-time applications such as the ones for which the SpiNNaker system has been designed. We present simulation results that show the efficacy of this algorithm using one or more input patterns repeated over the whole time of the simulation. On-chip results show that the STDP TTS algorithm allows the neural network to adapt and detect the incoming pattern with improvements both in the reliability of, and the time required for, consistent output. Through the approximations we suggest in this paper, we introduce a learning rule that is easy to implement both in event-driven simulators and in dedicated hardware, reducing computational complexity relative to the standard STDP rule. Such a rule offers a promising solution, complementary to standard STDP evaluation algorithms, for real-time learning using spiking neural networks in time-critical applications.
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Affiliation(s)
- S Davies
- School of Computer Science, The University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom.
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HAN FANG, WIERCIGROCH MARIAN, FANG JIANAN, WANG ZHIJIE. EXCITEMENT AND SYNCHRONIZATION OF SMALL-WORLD NEURONAL NETWORKS WITH SHORT-TERM SYNAPTIC PLASTICITY. Int J Neural Syst 2011; 21:415-25. [DOI: 10.1142/s0129065711002924] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Excitement and synchronization of electrically and chemically coupled Newman-Watts (NW) small-world neuronal networks with a short-term synaptic plasticity described by a modified Oja learning rule are investigated. For each type of neuronal network, the variation properties of synaptic weights are examined first. Then the effects of the learning rate, the coupling strength and the shortcut-adding probability on excitement and synchronization of the neuronal network are studied. It is shown that the synaptic learning suppresses the over-excitement, helps synchronization for the electrically coupled network but impairs synchronization for the chemically coupled one. Both the introduction of shortcuts and the increase of the coupling strength improve synchronization and they are helpful in increasing the excitement for the chemically coupled network, but have little effect on the excitement of the electrically coupled one.
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Affiliation(s)
- FANG HAN
- College of Information Science and Technology, Donghua University, Shanghai, 201620, P. R. China
| | - MARIAN WIERCIGROCH
- Centre for Applied Dynamics Research, University of Aberdeen, Aberdeen, AB24 3UE, U.K
| | - JIAN-AN FANG
- College of Information Science and Technology, Donghua University, Shanghai, 201620, P. R. China
| | - ZHIJIE WANG
- College of Information Science and Technology, Donghua University, Shanghai, 201620, P. R. China
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