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Xu Y, Wang J, Hu W. Prior-image-based low-dose CT reconstruction for adaptive radiation therapy. Phys Med Biol 2024; 69:215004. [PMID: 39284350 DOI: 10.1088/1361-6560/ad7b9b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2024] [Accepted: 09/16/2024] [Indexed: 09/20/2024]
Abstract
Objective. The study aims to reduce the imaging radiation dose in Adaptive Radiotherapy (ART) while maintaining high-quality CT images, critical for effective treatment planning and monitoring.Approach. We developed the Prior-aware Learned Primal-Dual Network (pLPD-UNet), which uses prior CT images to enhance reconstructions from low-dose scans. The network was separately trained on thorax and abdomen datasets to accommodate the unique imaging requirements of each anatomical region.Main results. The pLPD-UNet demonstrated improved reconstruction accuracy and robustness in handling sparse data compared to traditional methods. It effectively maintained image quality essential for precise organ delineation and dose calculation, while achieving a significant reduction in radiation exposure.Significance. This method offers a significant advancement in the practice of ART by integrating prior imaging data, potentially setting a new standard for balancing radiation safety with the need for high-resolution imaging in cancer treatment planning.
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Affiliation(s)
- Yao Xu
- Department of Radiation Oncology, Fudan University Shanghai Cancer Center, Shanghai 200032, People's Republic of China
- Department of Oncology, Shanghai Medical College, Fudan University, Shanghai 200032, People's Republic of China
- Shanghai Clinical Research Center for Radiation Oncology, Shanghai 200032, People's Republic of China
- Shanghai Key Laboratory of Radiation Oncology, Shanghai 200032, People's Republic of China
| | - Jiazhou Wang
- Department of Radiation Oncology, Fudan University Shanghai Cancer Center, Shanghai 200032, People's Republic of China
- Department of Oncology, Shanghai Medical College, Fudan University, Shanghai 200032, People's Republic of China
- Shanghai Clinical Research Center for Radiation Oncology, Shanghai 200032, People's Republic of China
- Shanghai Key Laboratory of Radiation Oncology, Shanghai 200032, People's Republic of China
| | - Weigang Hu
- Department of Radiation Oncology, Fudan University Shanghai Cancer Center, Shanghai 200032, People's Republic of China
- Department of Oncology, Shanghai Medical College, Fudan University, Shanghai 200032, People's Republic of China
- Shanghai Clinical Research Center for Radiation Oncology, Shanghai 200032, People's Republic of China
- Shanghai Key Laboratory of Radiation Oncology, Shanghai 200032, People's Republic of China
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Chatterjee S, Sciarra A, Dünnwald M, Ashoka ABT, Vasudeva MGC, Saravanan S, Sambandham VT, Tummala P, Oeltze-Jafra S, Speck O, Nürnberger A. Beyond Nyquist: A Comparative Analysis of 3D Deep Learning Models Enhancing MRI Resolution. J Imaging 2024; 10:207. [PMID: 39330427 PMCID: PMC11433164 DOI: 10.3390/jimaging10090207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2024] [Revised: 08/16/2024] [Accepted: 08/18/2024] [Indexed: 09/28/2024] Open
Abstract
High-spatial resolution MRI produces abundant structural information, enabling highly accurate clinical diagnosis and image-guided therapeutics. However, the acquisition of high-spatial resolution MRI data typically can come at the expense of less spatial coverage, lower signal-to-noise ratio (SNR), and longer scan time due to physical, physiological and hardware limitations. In order to overcome these limitations, super-resolution MRI deep-learning-based techniques can be utilised. In this work, different state-of-the-art 3D convolution neural network models for super resolution (RRDB, SPSR, UNet, UNet-MSS and ShuffleUNet) were compared for the super-resolution task with the goal of finding the best model in terms of performance and robustness. The public IXI dataset (only structural images) was used. Data were artificially downsampled to obtain lower-resolution spatial MRIs (downsampling factor varying from 8 to 64). When assessing performance using the SSIM metric in the test set, all models performed well. In particular, regardless of the downsampling factor, the UNet consistently obtained the top results. On the other hand, the SPSR model consistently performed worse. In conclusion, UNet and UNet-MSS achieved overall top performances while RRDB performed relatively poorly compared to the other models.
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Affiliation(s)
- Soumick Chatterjee
- Data and Knowledge Engineering Group, Otto von Guericke University Magdeburg, 39106 Magdeburg, Germany
- Faculty of Computer Science, Otto von Guericke University Magdeburg, 39106 Magdeburg, Germany; (M.D.); (A.B.T.A.); (M.G.C.V.); (S.S.); (V.T.S.); (P.T.)
- Genomics Research Centre, Human Technopole, 20157 Milan, Italy
| | - Alessandro Sciarra
- Department of Biomedical Magnetic Resonance, Otto von Guericke University Magdeburg, 39106 Magdeburg, Germany; (A.S.); (O.S.)
- MedDigit, Department of Neurology, Medical Faculty, University Hospital Magdeburg, 39120 Magdeburg, Germany;
| | - Max Dünnwald
- Faculty of Computer Science, Otto von Guericke University Magdeburg, 39106 Magdeburg, Germany; (M.D.); (A.B.T.A.); (M.G.C.V.); (S.S.); (V.T.S.); (P.T.)
- MedDigit, Department of Neurology, Medical Faculty, University Hospital Magdeburg, 39120 Magdeburg, Germany;
| | - Anitha Bhat Talagini Ashoka
- Faculty of Computer Science, Otto von Guericke University Magdeburg, 39106 Magdeburg, Germany; (M.D.); (A.B.T.A.); (M.G.C.V.); (S.S.); (V.T.S.); (P.T.)
- Fraunhofer Institute for Digital Media Technology, 98693 Ilmenau, Germany
| | - Mayura Gurjar Cheepinahalli Vasudeva
- Faculty of Computer Science, Otto von Guericke University Magdeburg, 39106 Magdeburg, Germany; (M.D.); (A.B.T.A.); (M.G.C.V.); (S.S.); (V.T.S.); (P.T.)
| | - Shudarsan Saravanan
- Faculty of Computer Science, Otto von Guericke University Magdeburg, 39106 Magdeburg, Germany; (M.D.); (A.B.T.A.); (M.G.C.V.); (S.S.); (V.T.S.); (P.T.)
| | - Venkatesh Thirugnana Sambandham
- Faculty of Computer Science, Otto von Guericke University Magdeburg, 39106 Magdeburg, Germany; (M.D.); (A.B.T.A.); (M.G.C.V.); (S.S.); (V.T.S.); (P.T.)
| | - Pavan Tummala
- Faculty of Computer Science, Otto von Guericke University Magdeburg, 39106 Magdeburg, Germany; (M.D.); (A.B.T.A.); (M.G.C.V.); (S.S.); (V.T.S.); (P.T.)
| | - Steffen Oeltze-Jafra
- MedDigit, Department of Neurology, Medical Faculty, University Hospital Magdeburg, 39120 Magdeburg, Germany;
- German Centre for Neurodegenerative Diseases, 37075 Magdeburg, Germany
- Centre for Behavioural Brain Sciences, 39106 Magdeburg, Germany
- Peter L. Reichertz Institute for Medical Informatics, Hannover Medical School, 30625 Hannover, Germany
| | - Oliver Speck
- Department of Biomedical Magnetic Resonance, Otto von Guericke University Magdeburg, 39106 Magdeburg, Germany; (A.S.); (O.S.)
- German Centre for Neurodegenerative Diseases, 37075 Magdeburg, Germany
- Centre for Behavioural Brain Sciences, 39106 Magdeburg, Germany
| | - Andreas Nürnberger
- Data and Knowledge Engineering Group, Otto von Guericke University Magdeburg, 39106 Magdeburg, Germany
- Faculty of Computer Science, Otto von Guericke University Magdeburg, 39106 Magdeburg, Germany; (M.D.); (A.B.T.A.); (M.G.C.V.); (S.S.); (V.T.S.); (P.T.)
- Centre for Behavioural Brain Sciences, 39106 Magdeburg, Germany
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Li G, Togo R, Ogawa T, Haseyama M. Importance-aware adaptive dataset distillation. Neural Netw 2024; 172:106154. [PMID: 38309137 DOI: 10.1016/j.neunet.2024.106154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Revised: 01/04/2024] [Accepted: 01/28/2024] [Indexed: 02/05/2024]
Abstract
Herein, we propose a novel dataset distillation method for constructing small informative datasets that preserve the information of the large original datasets. The development of deep learning models is enabled by the availability of large-scale datasets. Despite unprecedented success, large-scale datasets considerably increase the storage and transmission costs, resulting in a cumbersome model training process. Moreover, using raw data for training raises privacy and copyright concerns. To address these issues, a new task named dataset distillation has been introduced, aiming to synthesize a compact dataset that retains the essential information from the large original dataset. State-of-the-art (SOTA) dataset distillation methods have been proposed by matching gradients or network parameters obtained during training on real and synthetic datasets. The contribution of different network parameters to the distillation process varies, and uniformly treating them leads to degraded distillation performance. Based on this observation, we propose an importance-aware adaptive dataset distillation (IADD) method that can improve distillation performance by automatically assigning importance weights to different network parameters during distillation, thereby synthesizing more robust distilled datasets. IADD demonstrates superior performance over other SOTA dataset distillation methods based on parameter matching on multiple benchmark datasets and outperforms them in terms of cross-architecture generalization. In addition, the analysis of self-adaptive weights demonstrates the effectiveness of IADD. Furthermore, the effectiveness of IADD is validated in a real-world medical application such as COVID-19 detection.
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Affiliation(s)
- Guang Li
- Education and Research Center for Mathematical and Data Science, Hokkaido University, N-12, W-7, Kita-Ku, Sapporo, 060-0812, Japan.
| | - Ren Togo
- Faculty of Information Science and Technology, Hokkaido University, N-14, W-9, Kita-Ku, Sapporo, 060-0814, Japan.
| | - Takahiro Ogawa
- Faculty of Information Science and Technology, Hokkaido University, N-14, W-9, Kita-Ku, Sapporo, 060-0814, Japan.
| | - Miki Haseyama
- Faculty of Information Science and Technology, Hokkaido University, N-14, W-9, Kita-Ku, Sapporo, 060-0814, Japan.
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