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Helakari H, Järvelä M, Väyrynen T, Tuunanen J, Piispala J, Kallio M, Ebrahimi SM, Poltojainen V, Kananen J, Elabasy A, Huotari N, Raitamaa L, Tuovinen T, Korhonen V, Nedergaard M, Kiviniemi V. Effect of sleep deprivation and NREM sleep stage on physiological brain pulsations. Front Neurosci 2023; 17:1275184. [PMID: 38105924 PMCID: PMC10722275 DOI: 10.3389/fnins.2023.1275184] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2023] [Accepted: 11/02/2023] [Indexed: 12/19/2023] Open
Abstract
Introduction Sleep increases brain fluid transport and the power of pulsations driving the fluids. We investigated how sleep deprivation or electrophysiologically different stages of non-rapid-eye-movement (NREM) sleep affect the human brain pulsations. Methods Fast functional magnetic resonance imaging (fMRI) was performed in healthy subjects (n = 23) with synchronous electroencephalography (EEG), that was used to verify arousal states (awake, N1 and N2 sleep). Cardiorespiratory rates were verified with physiological monitoring. Spectral power analysis assessed the strength, and spectral entropy assessed the stability of the pulsations. Results In N1 sleep, the power of vasomotor (VLF < 0.1 Hz), but not cardiorespiratory pulsations, intensified after sleep deprived vs. non-sleep deprived subjects. The power of all three pulsations increased as a function of arousal state (N2 > N1 > awake) encompassing brain tissue in both sleep stages, but extra-axial CSF spaces only in N2 sleep. Spectral entropy of full band and respiratory pulsations decreased most in N2 sleep stage, while cardiac spectral entropy increased in ventricles. Discussion In summary, the sleep deprivation and sleep depth, both increase the power and harmonize the spectral content of human brain pulsations.
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Affiliation(s)
- Heta Helakari
- Oulu Functional Neuroimaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland
- Research Unit of Health Sciences and Technology, Faculty of Medicine, University of Oulu, Oulu, Finland
| | - Matti Järvelä
- Oulu Functional Neuroimaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland
- Research Unit of Health Sciences and Technology, Faculty of Medicine, University of Oulu, Oulu, Finland
| | - Tommi Väyrynen
- Oulu Functional Neuroimaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland
- Research Unit of Health Sciences and Technology, Faculty of Medicine, University of Oulu, Oulu, Finland
| | - Johanna Tuunanen
- Oulu Functional Neuroimaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland
- Research Unit of Health Sciences and Technology, Faculty of Medicine, University of Oulu, Oulu, Finland
| | - Johanna Piispala
- Clinical Neurophysiology, Oulu University Hospital, Oulu, Finland
| | - Mika Kallio
- Clinical Neurophysiology, Oulu University Hospital, Oulu, Finland
| | - Seyed Mohsen Ebrahimi
- Oulu Functional Neuroimaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland
- Research Unit of Health Sciences and Technology, Faculty of Medicine, University of Oulu, Oulu, Finland
| | - Valter Poltojainen
- Oulu Functional Neuroimaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland
- Research Unit of Health Sciences and Technology, Faculty of Medicine, University of Oulu, Oulu, Finland
| | - Janne Kananen
- Oulu Functional Neuroimaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland
- Research Unit of Health Sciences and Technology, Faculty of Medicine, University of Oulu, Oulu, Finland
- Clinical Neurophysiology, Oulu University Hospital, Oulu, Finland
| | - Ahmed Elabasy
- Oulu Functional Neuroimaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland
- Research Unit of Health Sciences and Technology, Faculty of Medicine, University of Oulu, Oulu, Finland
| | - Niko Huotari
- Oulu Functional Neuroimaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland
- Research Unit of Health Sciences and Technology, Faculty of Medicine, University of Oulu, Oulu, Finland
| | - Lauri Raitamaa
- Oulu Functional Neuroimaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland
- Research Unit of Health Sciences and Technology, Faculty of Medicine, University of Oulu, Oulu, Finland
| | - Timo Tuovinen
- Oulu Functional Neuroimaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland
- Research Unit of Health Sciences and Technology, Faculty of Medicine, University of Oulu, Oulu, Finland
| | - Vesa Korhonen
- Oulu Functional Neuroimaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland
- Research Unit of Health Sciences and Technology, Faculty of Medicine, University of Oulu, Oulu, Finland
| | - Maiken Nedergaard
- Center of Translational Neuromedicine, University of Copenhagen, Copenhagen, Denmark
- Center of Translational Neuromedicine, University of Rochester, Rochester, NY, United States
| | - Vesa Kiviniemi
- Oulu Functional Neuroimaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland
- Research Unit of Health Sciences and Technology, Faculty of Medicine, University of Oulu, Oulu, Finland
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Kananen J, Järvelä M, Korhonen V, Tuovinen T, Huotari N, Raitamaa L, Helakari H, Väyrynen T, Raatikainen V, Nedergaard M, Ansakorpi H, Jacobs J, LeVan P, Kiviniemi V. Increased interictal synchronicity of respiratory related brain pulsations in epilepsy. J Cereb Blood Flow Metab 2022; 42:1840-1853. [PMID: 35570730 PMCID: PMC9536129 DOI: 10.1177/0271678x221099703] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Respiratory brain pulsations have recently been shown to drive electrophysiological brain activity in patients with epilepsy. Furthermore, functional neuroimaging indicates that respiratory brain pulsations have increased variability and amplitude in patients with epilepsy compared to healthy individuals. To determine whether the respiratory drive is altered in epilepsy, we compared respiratory brain pulsation synchronicity between healthy controls and patients. Whole brain fast functional magnetic resonance imaging was performed on 40 medicated patients with focal epilepsy, 20 drug-naïve patients and 102 healthy controls. Cerebrospinal fluid associated respiratory pulsations were used to generate individual whole brain respiratory synchronization maps, which were compared between groups. Finally, we analyzed the seizure frequency effect and diagnostic accuracy of the respiratory synchronization defect in epilepsy. Respiratory brain pulsations related to the verified fourth ventricle pulsations were significantly more synchronous in patients in frontal, periventricular and mid-temporal regions, while the seizure frequency correlated positively with synchronicity. The respiratory brain synchronicity had a good diagnostic accuracy (ROCAUC = 0.75) in discriminating controls from medicated patients. The elevated respiratory brain synchronicity in focal epilepsy suggests altered physiological effect of cerebrospinal fluid pulsations possibly linked to regional brain water dynamics involved with interictal brain physiology.
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Affiliation(s)
- Janne Kananen
- Oulu Functional NeuroImaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland.,Medical Imaging, Physics and Technology (MIPT), Faculty of Medicine, University of Oulu, Oulu, Finland.,Medical Research Center (MRC), Oulu, Finland
| | - Matti Järvelä
- Oulu Functional NeuroImaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland.,Medical Imaging, Physics and Technology (MIPT), Faculty of Medicine, University of Oulu, Oulu, Finland.,Medical Research Center (MRC), Oulu, Finland
| | - Vesa Korhonen
- Oulu Functional NeuroImaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland.,Medical Imaging, Physics and Technology (MIPT), Faculty of Medicine, University of Oulu, Oulu, Finland.,Medical Research Center (MRC), Oulu, Finland
| | - Timo Tuovinen
- Oulu Functional NeuroImaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland.,Medical Imaging, Physics and Technology (MIPT), Faculty of Medicine, University of Oulu, Oulu, Finland.,Medical Research Center (MRC), Oulu, Finland
| | - Niko Huotari
- Oulu Functional NeuroImaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland.,Medical Imaging, Physics and Technology (MIPT), Faculty of Medicine, University of Oulu, Oulu, Finland.,Medical Research Center (MRC), Oulu, Finland
| | - Lauri Raitamaa
- Oulu Functional NeuroImaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland.,Medical Imaging, Physics and Technology (MIPT), Faculty of Medicine, University of Oulu, Oulu, Finland.,Medical Research Center (MRC), Oulu, Finland
| | - Heta Helakari
- Oulu Functional NeuroImaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland.,Medical Imaging, Physics and Technology (MIPT), Faculty of Medicine, University of Oulu, Oulu, Finland.,Medical Research Center (MRC), Oulu, Finland
| | - Tommi Väyrynen
- Oulu Functional NeuroImaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland.,Medical Imaging, Physics and Technology (MIPT), Faculty of Medicine, University of Oulu, Oulu, Finland.,Medical Research Center (MRC), Oulu, Finland
| | - Ville Raatikainen
- Oulu Functional NeuroImaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland.,Medical Imaging, Physics and Technology (MIPT), Faculty of Medicine, University of Oulu, Oulu, Finland.,Medical Research Center (MRC), Oulu, Finland
| | - Maiken Nedergaard
- Center for Translational Neuromedicine, Department of Neurosurgery, University of Rochester Medical Center, Rochester, NY, USA.,Center for Translational Neuromedicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark
| | - Hanna Ansakorpi
- Medical Research Center (MRC), Oulu, Finland.,Research Unit of Neuroscience, Neurology, University of Oulu, Oulu, Finland.,Department of Neurology, Oulu University Hospital, Oulu, Finland
| | - Julia Jacobs
- Department of Pediatric Neurology and Muscular Disease, University Medical Center Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.,Department of Paediatrics, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada.,Department of Neuroscience, Cumming School of Medicine, University of Calgary, Calgary, Canada.,Hotchkiss Brain Institute and Alberta Children's Hospital Research Institute, University of Calgary, Calgary, Canada
| | - Pierre LeVan
- Department of Paediatrics, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada.,Department of Neuroscience, Cumming School of Medicine, University of Calgary, Calgary, Canada.,Hotchkiss Brain Institute and Alberta Children's Hospital Research Institute, University of Calgary, Calgary, Canada.,Department of Radiology, Medical Physics, University Medical Center Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.,Department of Radiology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
| | - Vesa Kiviniemi
- Oulu Functional NeuroImaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland.,Medical Imaging, Physics and Technology (MIPT), Faculty of Medicine, University of Oulu, Oulu, Finland.,Medical Research Center (MRC), Oulu, Finland
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Raimondo L, Oliveira ĹAF, Heij J, Priovoulos N, Kundu P, Leoni RF, van der Zwaag W. Advances in resting state fMRI acquisitions for functional connectomics. Neuroimage 2021; 243:118503. [PMID: 34479041 DOI: 10.1016/j.neuroimage.2021.118503] [Citation(s) in RCA: 48] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2021] [Revised: 08/16/2021] [Accepted: 08/22/2021] [Indexed: 01/21/2023] Open
Abstract
Resting state functional magnetic resonance imaging (rs-fMRI) is based on spontaneous fluctuations in the blood oxygen level dependent (BOLD) signal, which occur simultaneously in different brain regions, without the subject performing an explicit task. The low-frequency oscillations of the rs-fMRI signal demonstrate an intrinsic spatiotemporal organization in the brain (brain networks) that may relate to the underlying neural activity. In this review article, we briefly describe the current acquisition techniques for rs-fMRI data, from the most common approaches for resting state acquisition strategies, to more recent investigations with dedicated hardware and ultra-high fields. Specific sequences that allow very fast acquisitions, or multiple echoes, are discussed next. We then consider how acquisition methods weighted towards specific parts of the BOLD signal, like the Cerebral Blood Flow (CBF) or Volume (CBV), can provide more spatially specific network information. These approaches are being developed alongside the commonly used BOLD-weighted acquisitions. Finally, specific applications of rs-fMRI to challenging regions such as the laminae in the neocortex, and the networks within the large areas of subcortical white matter regions are discussed. We finish the review with recommendations for acquisition strategies for a range of typical applications of resting state fMRI.
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Affiliation(s)
- Luisa Raimondo
- Spinoza Centre for Neuroimaging, Amsterdam, the Netherlands; Experimental and Applied Psychology, VU University, Amsterdam, the Netherlands
| | - Ĺcaro A F Oliveira
- Spinoza Centre for Neuroimaging, Amsterdam, the Netherlands; Experimental and Applied Psychology, VU University, Amsterdam, the Netherlands
| | - Jurjen Heij
- Spinoza Centre for Neuroimaging, Amsterdam, the Netherlands; Experimental and Applied Psychology, VU University, Amsterdam, the Netherlands
| | | | - Prantik Kundu
- Hyperfine Research Inc, Guilford, CT, United States; Icahn School of Medicine at Mt. Sinai, New York, United States
| | - Renata Ferranti Leoni
- InBrain, Department of Physics, FFCLRP, University of São Paulo, Ribeirão Preto, Brazil
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Dowdle LT, Ghose G, Chen CCC, Ugurbil K, Yacoub E, Vizioli L. Statistical power or more precise insights into neuro-temporal dynamics? Assessing the benefits of rapid temporal sampling in fMRI. Prog Neurobiol 2021; 207:102171. [PMID: 34492308 DOI: 10.1016/j.pneurobio.2021.102171] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Revised: 08/09/2021] [Accepted: 09/02/2021] [Indexed: 01/25/2023]
Abstract
Functional magnetic resonance imaging (fMRI), a non-invasive and widely used human neuroimaging method, is most known for its spatial precision. However, there is a growing interest in its temporal sensitivity. This is despite the temporal blurring of neuronal events by the blood oxygen level dependent (BOLD) signal, the peak of which lags neuronal firing by 4-6 seconds. Given this, the goal of this review is to answer a seemingly simple question - "What are the benefits of increased temporal sampling for fMRI?". To answer this, we have combined fMRI data collected at multiple temporal scales, from 323 to 1000 milliseconds, with a review of both historical and contemporary temporal literature. After a brief discussion of technological developments that have rekindled interest in temporal research, we next consider the potential statistical and methodological benefits. Most importantly, we explore how fast fMRI can uncover previously unobserved neuro-temporal dynamics - effects that are entirely missed when sampling at conventional 1 to 2 second rates. With the intrinsic link between space and time in fMRI, this temporal renaissance also delivers improvements in spatial precision. Far from producing only statistical gains, the array of benefits suggest that the continued temporal work is worth the effort.
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Affiliation(s)
- Logan T Dowdle
- Center for Magnetic Resonance Research, University of Minnesota, 2021 6th St SE, Minneapolis, MN, 55455, United States; Department of Neurosurgery, University of Minnesota, 500 SE Harvard St, Minneapolis, MN, 55455, United States; Department of Neuroscience, University of Minnesota, 321 Church St SE, Minneapolis, MN, 55455, United States.
| | - Geoffrey Ghose
- Center for Magnetic Resonance Research, University of Minnesota, 2021 6th St SE, Minneapolis, MN, 55455, United States; Department of Neuroscience, University of Minnesota, 321 Church St SE, Minneapolis, MN, 55455, United States
| | - Clark C C Chen
- Department of Neurosurgery, University of Minnesota, 500 SE Harvard St, Minneapolis, MN, 55455, United States
| | - Kamil Ugurbil
- Center for Magnetic Resonance Research, University of Minnesota, 2021 6th St SE, Minneapolis, MN, 55455, United States
| | - Essa Yacoub
- Center for Magnetic Resonance Research, University of Minnesota, 2021 6th St SE, Minneapolis, MN, 55455, United States
| | - Luca Vizioli
- Center for Magnetic Resonance Research, University of Minnesota, 2021 6th St SE, Minneapolis, MN, 55455, United States; Department of Neurosurgery, University of Minnesota, 500 SE Harvard St, Minneapolis, MN, 55455, United States.
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Chatzistefanidis D, Huang D, Dümpelmann M, Jacobs J, Schulze-Bonhage A, LeVan P. Topography-Related EEG-fMRI in Surgically Confirmed Epileptic Foci: A Comparison to Spike-Related EEG-fMRI in Clinical Practice. Brain Topogr 2021; 34:373-383. [PMID: 33730357 DOI: 10.1007/s10548-021-00832-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Accepted: 03/09/2021] [Indexed: 11/30/2022]
Abstract
EEG-fMRI has gained increasing importance in epilepsy pre-surgical diagnosis. However, 40-70% of EEG-fMRI recordings in patients lack interictal epileptiform discharges (IEDs) during the scan, which could be overcome by detecting matching topography maps. We tried to validate this method in clinical settings taking various electroclinical factors into consideration. Eleven patients who had undergone EEG-fMRI during pre-surgical evaluation for drug-resistant epilepsy and who had had clinical long-term video-EEG were studied. Spike-related blood oxygen level-dependent (BOLD) maps were created using IEDs occurring during the EEG-fMRI scan. Separate maps were then generated from IEDs marked on the clinical long-term EEG recordings, which were averaged to produce topographical IED maps and correlated with the EEGs recorded inside the scanner yielding a correlation coefficient time course. Epileptogenic zones were defined by an expert panel during pre-surgical evaluation and validated by an epilepsy surgery resulting in a good outcome. Both techniques' performance was evaluated according to factors including arousal during IED recording, IED topography and lateralization, lesion type, and localization. Topography-related EEG-fMRI yielded more specific results compared to the spike-related method. Superficial lesion location and ipsilateral IED seem to result in a higher concordance of BOLD maps. The polarity of BOLD responses may be lesion-dependent, and both positive and negative BOLD changes may be associated with the irritative zone. Topography-related EEG-fMRI may show improved specificity especially for superficial lesions producing ipsilateral spikes. This method can be used as an alternative either in the absence of spikes during the simultaneous EEG-fMRI acquisition or to sharpen a diffusely activated BOLD-map.
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Affiliation(s)
| | - Dengfeng Huang
- Department Radiology, Medical Physics, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - Matthias Dümpelmann
- Epilepsy Center, Department Neurosurgery, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - Julia Jacobs
- Department Neuropediatrics and Muscular Diseases, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.,Hotchkiss Brain Institute and Alberta Children's Hospital Research Institute, University of Calgary, Calgary, Canada
| | - Andreas Schulze-Bonhage
- Epilepsy Center, Department Neurosurgery, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - Pierre LeVan
- Hotchkiss Brain Institute and Alberta Children's Hospital Research Institute, University of Calgary, Calgary, Canada.,Departments of Radiology and Paediatrics, Cumming School of Medicine, University of Calgary, Calgary, Canada
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Barghoorn A, Riemenschneider B, Hennig J, LeVan P. Improving the sensitivity of spin-echo fMRI at 3T by highly accelerated acquisitions. Magn Reson Med 2021; 86:245-257. [PMID: 33624352 DOI: 10.1002/mrm.28715] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2020] [Revised: 01/14/2021] [Accepted: 01/14/2021] [Indexed: 11/11/2022]
Abstract
PURPOSE Spin-echo (SE) functional MRI (fMRI) can be highly advantageous compared to gradient-echo (GE) fMRI with respect to magnetic field-inhomogeneity artifacts. However, at 3T, the majority of blood oxygenation level-dependent (BOLD) fMRI experiments are performed using T 2 ∗ -weighted GE sequences because of their superior sensitivity compared to SE-fMRI. The presented SE implementation of a highly accelerated GE pulse sequence therefore aims to improve the sensitivity of SE-fMRI while profiting from a reduction of susceptibility-induced signal dropout. METHODS Spin-echo MR encephalography (SE-MREG) is compared with the more conventionally used spin-echo echo-planar imaging (SE-EPI) and spin-echo simultaneous multislice (SE-SMS) at 3T in terms of capability to detect neuronal activations and resting-state functional connectivity. For activation analysis, healthy subjects underwent consecutive SE-MREG (pulse repetition time [TR] = 0.25 seconds), SE-SMS (TR = 1.3 seconds), and SE-EPI (TR = 4.4 seconds) scans in pseudorandomized order applied to a visual block design paradigm for generation of t-statistics maps. For the investigation of functional connectivity, additional resting-state data were acquired for 5 minutes and a seed-based correlation analysis using Stanford's FIND (Functional Imaging in Neuropsychiatric Disorders) atlas was performed. RESULTS The increased sampling rate of SE-MREG relative to SE-SMS and SE-EPI improves the sensitivity to detect BOLD activation by 33% and 54%, respectively, and increases the capability to extract resting-state networks. Compared with a brain region that is not affected by magnetic field inhomogeneities, SE-MREG shows 2.5 times higher relative signal strength than GE-MREG in mesial temporal structures. CONCLUSION SE-MREG offers a viable possibility for whole-brain fMRI with consideration of brain regions that are affected by strong susceptibility-induced magnetic field gradients.
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Affiliation(s)
- Antonia Barghoorn
- Department of Radiology, Medical Physics, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - Bruno Riemenschneider
- Department of Radiology, Medical Physics, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - Jürgen Hennig
- Department of Radiology, Medical Physics, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.,Center for Basics in NeuroModulation (NeuroModul Basics), University of Freiburg, Freiburg, Germany
| | - Pierre LeVan
- Department of Radiology, Medical Physics, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.,Departments of Radiology and Paediatrics, Cumming School of Medicine, University of Calgary, Calgary, Canada.,Hotchkiss Brain Institute and Alberta Children's Hospital Research Institute, University of Calgary, Calgary, Canada
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Hennig J, Kiviniemi V, Riemenschneider B, Barghoorn A, Akin B, Wang F, LeVan P. 15 Years MR-encephalography. MAGNETIC RESONANCE MATERIALS IN PHYSICS BIOLOGY AND MEDICINE 2020; 34:85-108. [PMID: 33079327 PMCID: PMC7910380 DOI: 10.1007/s10334-020-00891-z] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/08/2020] [Revised: 09/02/2020] [Accepted: 09/29/2020] [Indexed: 02/07/2023]
Abstract
Objective This review article gives an account of the development of the MR-encephalography (MREG) method, which started as a mere ‘Gedankenexperiment’ in 2005 and gradually developed into a method for ultrafast measurement of physiological activities in the brain. After going through different approaches covering k-space with radial, rosette, and concentric shell trajectories we have settled on a stack-of-spiral trajectory, which allows full brain coverage with (nominal) 3 mm isotropic resolution in 100 ms. The very high acceleration factor is facilitated by the near-isotropic k-space coverage, which allows high acceleration in all three spatial dimensions. Methods The methodological section covers the basic sequence design as well as recent advances in image reconstruction including the targeted reconstruction, which allows real-time feedback applications, and—most recently—the time-domain principal component reconstruction (tPCR), which applies a principal component analysis of the acquired time domain data as a sparsifying transformation to improve reconstruction speed as well as quality. Applications Although the BOLD-response is rather slow, the high speed acquisition of MREG allows separation of BOLD-effects from cardiac and breathing related pulsatility. The increased sensitivity enables direct detection of the dynamic variability of resting state networks as well as localization of single interictal events in epilepsy patients. A separate and highly intriguing application is aimed at the investigation of the glymphatic system by assessment of the spatiotemporal patterns of cardiac and breathing related pulsatility. Discussion MREG has been developed to push the speed limits of fMRI. Compared to multiband-EPI this allows considerably faster acquisition at the cost of reduced image quality and spatial resolution.
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Affiliation(s)
- Juergen Hennig
- Department of Radiology, Medical Physics, Faculty of Medicine, Medical Center University of Freiburg, University of Freiburg, Freiburg, Germany. .,Center for Basics in NeuroModulation (NeuroModulBasics), Faculty of Medicine, University of Freiburg, Freiburg, Germany.
| | - Vesa Kiviniemi
- Oulu Functional NeuroImaging Group, Research Unit of Medical Imaging, Physics and Technology, University of Oulu, Oulu, Finland
| | - Bruno Riemenschneider
- Department of Radiology, Center for Biomedical Imaging, New York University Grossman School of Medicine, New York, NY, USA
| | - Antonia Barghoorn
- Department of Radiology, Medical Physics, Faculty of Medicine, Medical Center University of Freiburg, University of Freiburg, Freiburg, Germany.,Center for Basics in NeuroModulation (NeuroModulBasics), Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - Burak Akin
- Department of Radiology, Medical Physics, Faculty of Medicine, Medical Center University of Freiburg, University of Freiburg, Freiburg, Germany.,Center for Basics in NeuroModulation (NeuroModulBasics), Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - Fei Wang
- Department of Radiology, Medical Physics, Faculty of Medicine, Medical Center University of Freiburg, University of Freiburg, Freiburg, Germany.,Center for Basics in NeuroModulation (NeuroModulBasics), Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - Pierre LeVan
- Departments of Radiology and Paediatrics, Hotchkiss Brain Institute and Alberta Children's Hospital Research Institute, University of Calgary, Calgary, AB, Canada
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8
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Kananen J, Helakari H, Korhonen V, Huotari N, Järvelä M, Raitamaa L, Raatikainen V, Rajna Z, Tuovinen T, Nedergaard M, Jacobs J, LeVan P, Ansakorpi H, Kiviniemi V. Respiratory-related brain pulsations are increased in epilepsy-a two-centre functional MRI study. Brain Commun 2020; 2:fcaa076. [PMID: 32954328 PMCID: PMC7472909 DOI: 10.1093/braincomms/fcaa076] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2020] [Revised: 04/29/2020] [Accepted: 05/05/2020] [Indexed: 01/03/2023] Open
Abstract
Resting-state functional MRI has shown potential for detecting changes in cerebral blood oxygen level-dependent signal in patients with epilepsy, even in the absence of epileptiform activity. Furthermore, it has been suggested that coefficient of variation mapping of fast functional MRI signal may provide a powerful tool for the identification of intrinsic brain pulsations in neurological diseases such as dementia, stroke and epilepsy. In this study, we used fast functional MRI sequence (magnetic resonance encephalography) to acquire ten whole-brain images per second. We used the functional MRI data to compare physiological brain pulsations between healthy controls (n = 102) and patients with epilepsy (n = 33) and furthermore to drug-naive seizure patients (n = 9). Analyses were performed by calculating coefficient of variation and spectral power in full band and filtered sub-bands. Brain pulsations in the respiratory-related frequency sub-band (0.11-0.51 Hz) were significantly (P < 0.05) increased in patients with epilepsy, with an increase in both signal variance and power. At the individual level, over 80% of medicated and drug-naive seizure patients exhibited areas of abnormal brain signal power that correlated well with the known clinical diagnosis, while none of the controls showed signs of abnormality with the same threshold. The differences were most apparent in the basal brain structures, respiratory centres of brain stem, midbrain and temporal lobes. Notably, full-band, very low frequency (0.01-0.1 Hz) and cardiovascular (0.8-1.76 Hz) brain pulses showed no differences between groups. This study extends and confirms our previous results of abnormal fast functional MRI signal variance in epilepsy patients. Only respiratory-related brain pulsations were clearly increased with no changes in either physiological cardiorespiratory rates or head motion between the subjects. The regional alterations in brain pulsations suggest that mechanisms driving the cerebrospinal fluid homeostasis may be altered in epilepsy. Magnetic resonance encephalography has both increased sensitivity and high specificity for detecting the increased brain pulsations, particularly in times when other tools for locating epileptogenic areas remain inconclusive.
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Affiliation(s)
- Janne Kananen
- Oulu Functional NeuroImaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu 90029, Finland
- Medical Imaging, Physics and Technology (MIPT), Faculty of Medicine, University of Oulu, Oulu 90220, Finland
- Medical Research Center (MRC), Oulu 90220, Finland
| | - Heta Helakari
- Oulu Functional NeuroImaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu 90029, Finland
- Medical Imaging, Physics and Technology (MIPT), Faculty of Medicine, University of Oulu, Oulu 90220, Finland
- Medical Research Center (MRC), Oulu 90220, Finland
| | - Vesa Korhonen
- Oulu Functional NeuroImaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu 90029, Finland
- Medical Imaging, Physics and Technology (MIPT), Faculty of Medicine, University of Oulu, Oulu 90220, Finland
- Medical Research Center (MRC), Oulu 90220, Finland
| | - Niko Huotari
- Oulu Functional NeuroImaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu 90029, Finland
- Medical Imaging, Physics and Technology (MIPT), Faculty of Medicine, University of Oulu, Oulu 90220, Finland
- Medical Research Center (MRC), Oulu 90220, Finland
| | - Matti Järvelä
- Oulu Functional NeuroImaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu 90029, Finland
- Medical Imaging, Physics and Technology (MIPT), Faculty of Medicine, University of Oulu, Oulu 90220, Finland
- Medical Research Center (MRC), Oulu 90220, Finland
| | - Lauri Raitamaa
- Oulu Functional NeuroImaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu 90029, Finland
- Medical Imaging, Physics and Technology (MIPT), Faculty of Medicine, University of Oulu, Oulu 90220, Finland
- Medical Research Center (MRC), Oulu 90220, Finland
| | - Ville Raatikainen
- Oulu Functional NeuroImaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu 90029, Finland
- Medical Imaging, Physics and Technology (MIPT), Faculty of Medicine, University of Oulu, Oulu 90220, Finland
- Medical Research Center (MRC), Oulu 90220, Finland
| | - Zalan Rajna
- Oulu Functional NeuroImaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu 90029, Finland
- Center for Machine Vision and Signal Analysis (CMVS), University of Oulu, Oulu 90014, Finland
| | - Timo Tuovinen
- Oulu Functional NeuroImaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu 90029, Finland
- Medical Imaging, Physics and Technology (MIPT), Faculty of Medicine, University of Oulu, Oulu 90220, Finland
- Medical Research Center (MRC), Oulu 90220, Finland
| | - Maiken Nedergaard
- Center for Translational Neuromedicine, Department of Neurosurgery, University of Rochester Medical Center, Rochester, NY 14642, USA
- Center for Translational Neuromedicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen 2200, Denmark
| | - Julia Jacobs
- Department of Pediatric Neurology and Muscular Disease, University Medical Center Freiburg, Faculty of Medicine, University of Freiburg, Freiburg 79110, Germany
- Department of Paediatrics, Cumming School of Medicine, University of Calgary, Calgary, AB T2N 4N1, Canada
- Department of Neuroscience, Cumming School of Medicine, University of Calgary, Calgary, AB T2N 4N1, Canada
- Hotchkiss Brain Institute and Alberta Children’s Hospital Research Institute, University of Calgary, Calgary, AB T2N 4N1, Canada
| | - Pierre LeVan
- Department of Paediatrics, Cumming School of Medicine, University of Calgary, Calgary, AB T2N 4N1, Canada
- Department of Neuroscience, Cumming School of Medicine, University of Calgary, Calgary, AB T2N 4N1, Canada
- Hotchkiss Brain Institute and Alberta Children’s Hospital Research Institute, University of Calgary, Calgary, AB T2N 4N1, Canada
- Department of Radiology, Medical Physics, University Medical Center Freiburg, Faculty of Medicine, University of Freiburg, Freiburg 79110, Germany
- Department of Radiology, Cumming School of Medicine, University of Calgary, Calgary, AB T2N 4N1, Canada
| | - Hanna Ansakorpi
- Medical Research Center (MRC), Oulu 90220, Finland
- Research Unit of Neuroscience, Neurology, University of Oulu, Oulu 90220, Finland
- Department of Neurology, Oulu University Hospital, Oulu 90029, Finland
| | - Vesa Kiviniemi
- Oulu Functional NeuroImaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu 90029, Finland
- Medical Imaging, Physics and Technology (MIPT), Faculty of Medicine, University of Oulu, Oulu 90220, Finland
- Medical Research Center (MRC), Oulu 90220, Finland
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9
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Wang F, Hennig J, LeVan P. Time-domain principal component reconstruction (tPCR): A more efficient and stable iterative reconstruction framework for non-Cartesian functional MRI. Magn Reson Med 2020; 84:1321-1335. [PMID: 32068309 DOI: 10.1002/mrm.28208] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2019] [Revised: 12/27/2019] [Accepted: 01/19/2020] [Indexed: 12/20/2022]
Abstract
PURPOSE To improve the reconstruction efficiency (i.e., computational load) and stability of iterative reconstruction for non-Cartesian fMRI when using high undersampling rates and/or in the presence of strong off-resonance effects. THEORY AND METHODS The magnetic resonance encephalography (MREG) sequence with 3D non-Cartesian trajectory and 0.1s repetition time (TR) was applied to acquire fMRI datasets. Different from a conventional time-point-by-time-point sequential reconstruction (SR), the proposed time-domain principal component reconstruction (tPCR) performs three steps: (1) decomposing the k-t-space fMRI datasets into time-domain principal component space using singular value decomposition, (2) reconstructing each principal component with redistributed computation power according to their weights, and (3) combining the reconstructed principal components back to image-t-space. The comparison of reconstruction accuracy was performed by simulation experiments and then verified in real fMRI data. RESULTS The simulation experiments showed that the proposed tPCR was able to significantly reduce reconstruction errors, and subsequent functional activation errors, relative to SR at identical computational cost. Alternatively, at fixed reconstruction accuracy, computation time was greatly reduced. The improved performance was particularly obvious for L1-norm nonlinear reconstructions relative to L2-norm linear reconstructions and robust to different regularization strength, undersampling rates, and off-resonance effects intensity. By examining activation maps, tPCR was also found to give similar improvements in real fMRI experiments. CONCLUSION The proposed proof-of-concept tPCR framework could improve (1) the reconstruction efficiency of iterative reconstruction, and (2) the reconstruction stability especially for nonlinear reconstructions. As a practical consideration, the improved reconstruction speed promotes the application of highly undersampled non-Cartesian fast fMRI.
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Affiliation(s)
- Fei Wang
- Department of Radiology, Medical Physics, Faculty of Medicine, Medical Center - University of Freiburg, Freiburg, Germany.,Center for Basics in NeuroModulation (NeuroModul Basics), Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - Jürgen Hennig
- Department of Radiology, Medical Physics, Faculty of Medicine, Medical Center - University of Freiburg, Freiburg, Germany.,Center for Basics in NeuroModulation (NeuroModul Basics), Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - Pierre LeVan
- Department of Radiology, Medical Physics, Faculty of Medicine, Medical Center - University of Freiburg, Freiburg, Germany.,Departments of Radiology and Paediatrics, Cumming School of Medicine, University of Calgary, Calgary, Canada.,Alberta Children's Hospital Research Institute and Hotchkiss Brain Institute, University of Calgary, Calgary, Canada
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10
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Abstract
Candidates for epilepsy surgery must undergo presurgical evaluation to establish whether and how surgical treatment can stop seizures without causing neurological deficits. Various techniques, including MRI, PET, single-photon emission CT, video-EEG, magnetoencephalography and invasive EEG, aim to identify the diseased brain tissue and the involved network. Recent technical and methodological developments, encompassing both advances in existing techniques and new combinations of technologies, are enhancing the ability to define the optimal resection strategy. Multimodal interpretation and predictive computer models are expected to aid surgical planning and patient counselling, and multimodal intraoperative guidance is likely to increase surgical precision. In this Review, we discuss how the knowledge derived from these new approaches is challenging our way of thinking about surgery to stop focal seizures. In particular, we highlight the importance of looking beyond the EEG seizure onset zone and considering focal epilepsy as a brain network disease in which long-range connections need to be taken into account. We also explore how new diagnostic techniques are revealing essential information in the brain that was previously hidden from view.
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11
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Spectral entropy indicates electrophysiological and hemodynamic changes in drug-resistant epilepsy - A multimodal MREG study. NEUROIMAGE-CLINICAL 2019; 22:101763. [PMID: 30927607 PMCID: PMC6444290 DOI: 10.1016/j.nicl.2019.101763] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/19/2018] [Revised: 02/01/2019] [Accepted: 03/10/2019] [Indexed: 12/20/2022]
Abstract
Objective Epilepsy causes measurable irregularity over a range of brain signal frequencies, as well as autonomic nervous system functions that modulate heart and respiratory rate variability. Imaging dynamic neuronal signals utilizing simultaneously acquired ultra-fast 10 Hz magnetic resonance encephalography (MREG), direct current electroencephalography (DC-EEG), and near-infrared spectroscopy (NIRS) can provide a more comprehensive picture of human brain function. Spectral entropy (SE) is a nonlinear method to summarize signal power irregularity over measured frequencies. SE was used as a joint measure to study whether spectral signal irregularity over a range of brain signal frequencies based on synchronous multimodal brain signals could provide new insights in the neural underpinnings of epileptiform activity. Methods Ten patients with focal drug-resistant epilepsy (DRE) and ten healthy controls (HC) were scanned with 10 Hz MREG sequence in combination with EEG, NIRS (measuring oxygenated, deoxygenated, and total hemoglobin: HbO, Hb, and HbT, respectively), and cardiorespiratory signals. After pre-processing, voxelwise SEMREG was estimated from MREG data. Different neurophysiological and physiological subfrequency band signals were further estimated from MREG, DC-EEG, and NIRS: fullband (0–5 Hz, FB), near FB (0.08–5 Hz, NFB), brain pulsations in very-low (0.009–0.08 Hz, VLFP), respiratory (0.12–0.4 Hz, RFP), and cardiac (0.7–1.6 Hz, CFP) frequency bands. Global dynamic fluctuations in MREG and NIRS were analyzed in windows of 2 min with 50% overlap. Results Right thalamus, cingulate gyrus, inferior frontal gyrus, and frontal pole showed significantly higher SEMREG in DRE patients compared to HC. In DRE patients, SE of cortical Hb was significantly reduced in FB (p = .045), NFB (p = .017), and CFP (p = .038), while both HbO and HbT were significantly reduced in RFP (p = .038, p = .045, respectively). Dynamic SE of HbT was reduced in DRE patients in RFP during minutes 2 to 6. Fitting to the frontal MREG and NIRS results, DRE patients showed a significant increase in SEEEG in FB in fronto-central and parieto-occipital regions, in VLFP in parieto-central region, accompanied with a significant decrease in RFP in frontal pole and parietal and occipital (O2, Oz) regions. Conclusion This is the first study to show altered spectral entropy from synchronous MREG, EEG, and NIRS in DRE patients. Higher SEMREG in DRE patients in anterior cingulate gyrus together with SEEEG and SENIRS results in 0.12–0.4 Hz can be linked to altered parasympathetic function and respiratory pulsations in the brain. Higher SEMREG in thalamus in DRE patients is connected to disturbances in anatomical and functional connections in epilepsy. Findings suggest that spectral irregularity of both electrophysiological and hemodynamic signals are altered in specific way depending on the physiological frequency range. Simultaneous imaging methods indicate spectral irregularity in neurovascular and electrophysiological brain pulsations in DRE. Altered spectral entropy in EEG, NIRS and BOLD indicate dysfunctional brain pulsations in respiratory frequency in epilepsy. Spectral irregularity (0-5 Hz) of BOLD in right thalamus supports previous structural and functional findings in epilepsy.
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12
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Chen JE, Polimeni JR, Bollmann S, Glover GH. On the analysis of rapidly sampled fMRI data. Neuroimage 2019; 188:807-820. [PMID: 30735828 PMCID: PMC6984348 DOI: 10.1016/j.neuroimage.2019.02.008] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2018] [Revised: 01/11/2019] [Accepted: 02/04/2019] [Indexed: 02/08/2023] Open
Abstract
Recent advances in parallel imaging and simultaneous multi-slice techniques have permitted whole-brain fMRI acquisitions at sub-second sampling intervals, without significantly sacrificing the spatial coverage and resolution. Apart from probing brain function at finer temporal scales, faster sampling rates may potentially lead to enhanced functional sensitivity, owing possibly to both cleaner neural representations (due to less aliased physiological noise) and additional statistical benefits (due to more degrees of freedom for a fixed scan duration). Accompanying these intriguing aspects of fast acquisitions, however, confusion has also arisen regarding (1) how to preprocess/analyze these fast fMRI data, and (2) what exactly is the extent of benefits with fast acquisitions, i.e., how fast is fast enough for a specific research aim? The first question is motivated by the altered spectral distribution and noise characteristics at short sampling intervals, while the second question seeks to reconcile the complicated trade-offs between the functional contrast-to-noise ratio and the effective degrees of freedom. Although there have been recent efforts to empirically approach different aspects of these two questions, in this work we discuss, from a theoretical perspective accompanied by some illustrative, proof-of-concept experimental in vivo human fMRI data, a few considerations that are rarely mentioned, yet are important for both preprocessing and optimizing statistical inferences for studies that employ acquisitions with sub-second sampling intervals. Several summary recommendations include concerns regarding advisability of relying on low-pass filtering to de-noise physiological contributions, employment of statistical models with sufficient complexity to account for the substantially increased serial correlation, and cautions regarding using rapid sampling to enhance functional sensitivity given that different analysis models may associate with distinct trade-offs between contrast-to-noise ratios and the effective degrees of freedom. As an example, we demonstrate that as TR shortens, the intrinsic differences in how noise is accommodated in general linear models and Pearson correlation analyses (assuming Gaussian distributed stochastic signals and noise) can result in quite different outcomes, either gaining or losing statistical power.
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Affiliation(s)
- Jingyuan E Chen
- Department of Radiology, Stanford University, Stanford, CA, USA; Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Boston, MA, USA; Department of Radiology, Harvard Medical School, Boston, MA, USA.
| | - Jonathan R Polimeni
- Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Boston, MA, USA; Department of Radiology, Harvard Medical School, Boston, MA, USA; Harvard-Massachusetts Institute of Technology Division of Health Sciences and Technology, Cambridge, MA, USA
| | - Saskia Bollmann
- Centre for Advanced Imaging, The University of Queensland, Brisbane, QLD 4072, Australia
| | - Gary H Glover
- Department of Radiology, Stanford University, Stanford, CA, USA
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13
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Kogias E, Schmeiser B, Doostkam S, Brandt A, Hammen T, Zentner J, Ramantani G. Multilobar Resections for 3T MRI-Negative Epilepsy: Worth the Trouble? World Neurosurg 2018; 123:e338-e347. [PMID: 30502474 DOI: 10.1016/j.wneu.2018.11.170] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2018] [Revised: 11/12/2018] [Accepted: 11/19/2018] [Indexed: 12/01/2022]
Abstract
OBJECTIVE Multilobar resection in magnetic resonance imaging (MRI)-negative drug-resistant epilepsy warrants attention because they account for up to one third of MRI-negative epilepsy surgery. Despite their high prevalence, data are sparse, and the risk/benefit ratio continues to be debated. The present study investigated the postoperative seizure outcomes in this especially challenging subgroup. METHODS We retrospectively analyzed the data of 4 consecutive patients with 3T MRI-negative findings and drug-resistant focal epilepsy who had undergone multilobar epilepsy surgery at our institution. RESULTS The mean age at first surgery was 28.5 years (range, 14-48); 1 patient required 2 consecutive reoperations. The final resection was in the frontotemporal and temporo-parieto-occipital regions in 2 patients each. Histopathological examination revealed mild malformations of cortical development in 2 patients and focal cortical dysplasia type Ia and type IIa in 1 patient each. At the last follow-up examination (median, 3.3 years; range, 1-11), 2 patients were completely seizure free (Engel class Ia), 1 patient had experienced some disabling seizures after surgery but had been free of disabling seizures for 2 years at the last follow-up examination (Engel class Ic), and 1 patient had experienced worthwhile improvement (Engel class IIb) and had been seizure free for 1 year at the last follow-up examination. No surgical complications developed. CONCLUSIONS Our results have demonstrated that multilobar epilepsy surgery is effective for lasting seizure control for selected 3T MRI-negative candidates, leading to favorable outcomes for all 4 of our patients. Comprehensive multimodal preoperative evaluation is a prerequisite for postoperative success. Reevaluation should be considered for patients with seizure recurrence, because reoperation could be especially beneficial for selected patients who have not responded to an initially limited resection.
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Affiliation(s)
- Evangelos Kogias
- Department of Neurosurgery, Medical Center - University of Freiburg, Freiburg, Germany
| | - Barbara Schmeiser
- Department of Neurosurgery, Medical Center - University of Freiburg, Freiburg, Germany
| | - Soroush Doostkam
- Institute of Neuropathology, Medical Center - University of Freiburg, Freiburg, Germany
| | - Armin Brandt
- Epilepsy Center, Department of Neurosurgery, Medical Center - University of Freiburg, Freiburg, Germany
| | - Thilo Hammen
- Epilepsy Center, Department of Neurosurgery, Medical Center - University of Freiburg, Freiburg, Germany
| | - Josef Zentner
- Department of Neurosurgery, Medical Center - University of Freiburg, Freiburg, Germany
| | - Georgia Ramantani
- Epilepsy Center, Department of Neurosurgery, Medical Center - University of Freiburg, Freiburg, Germany; Department of Neuropediatrics, University Children's Hospital Zurich, Zurich, Switzerland.
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14
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Fast imaging for mapping dynamic networks. Neuroimage 2018; 180:547-558. [DOI: 10.1016/j.neuroimage.2017.08.029] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2017] [Revised: 07/21/2017] [Accepted: 08/09/2017] [Indexed: 01/22/2023] Open
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15
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Kananen J, Tuovinen T, Ansakorpi H, Rytky S, Helakari H, Huotari N, Raitamaa L, Raatikainen V, Rasila A, Borchardt V, Korhonen V, LeVan P, Nedergaard M, Kiviniemi V. Altered physiological brain variation in drug-resistant epilepsy. Brain Behav 2018; 8:e01090. [PMID: 30112813 PMCID: PMC6160661 DOI: 10.1002/brb3.1090] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/06/2018] [Revised: 07/04/2018] [Accepted: 07/08/2018] [Indexed: 12/26/2022] Open
Abstract
INTRODUCTION Functional magnetic resonance imaging (fMRI) combined with simultaneous electroencephalography (EEG-fMRI) has become a major tool in mapping epilepsy sources. In the absence of detectable epileptiform activity, the resting state fMRI may still detect changes in the blood oxygen level-dependent signal, suggesting intrinsic alterations in the underlying brain physiology. METHODS In this study, we used coefficient of variation (CV) of critically sampled 10 Hz ultra-fast fMRI (magnetoencephalography, MREG) signal to compare physiological variance between healthy controls (n = 10) and patients (n = 10) with drug-resistant epilepsy (DRE). RESULTS We showed highly significant voxel-level (p < 0.01, TFCE-corrected) increase in the physiological variance in DRE patients. At individual level, the elevations range over three standard deviations (σ) above the control mean (μ) CVMREG values solely in DRE patients, enabling patient-specific mapping of elevated physiological variance. The most apparent differences in group-level analysis are found on white matter, brainstem, and cerebellum. Respiratory (0.12-0.4 Hz) and very-low-frequency (VLF = 0.009-0.1 Hz) signal variances were most affected. CONCLUSIONS The CVMREG increase was not explained by head motion or physiological cardiorespiratory activity, that is, it seems to be linked to intrinsic physiological pulsations. We suggest that intrinsic brain pulsations play a role in DRE and that critically sampled fMRI may provide a powerful tool for their identification.
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Affiliation(s)
- Janne Kananen
- Department of Diagnostic Radiology, Medical Research Center, Oulu University Hospital, Oulu, Finland.,Oulu Functional NeuroImaging-Group, Research Unit of Medical Imaging, Physics and Technology, University of Oulu, Oulu, Finland
| | - Timo Tuovinen
- Department of Diagnostic Radiology, Medical Research Center, Oulu University Hospital, Oulu, Finland.,Oulu Functional NeuroImaging-Group, Research Unit of Medical Imaging, Physics and Technology, University of Oulu, Oulu, Finland
| | - Hanna Ansakorpi
- Research Unit of Neuroscience, Neurology, University of Oulu, Oulu, Finland.,Department of Neurology and Medical Research Center Oulu, Oulu University Hospital, Oulu, Finland
| | - Seppo Rytky
- Department of Clinical Neurophysiology, Medical Research Center Oulu, Oulu University Hospital, Oulu, Finland
| | - Heta Helakari
- Department of Diagnostic Radiology, Medical Research Center, Oulu University Hospital, Oulu, Finland.,Oulu Functional NeuroImaging-Group, Research Unit of Medical Imaging, Physics and Technology, University of Oulu, Oulu, Finland
| | - Niko Huotari
- Department of Diagnostic Radiology, Medical Research Center, Oulu University Hospital, Oulu, Finland.,Oulu Functional NeuroImaging-Group, Research Unit of Medical Imaging, Physics and Technology, University of Oulu, Oulu, Finland
| | - Lauri Raitamaa
- Department of Diagnostic Radiology, Medical Research Center, Oulu University Hospital, Oulu, Finland.,Oulu Functional NeuroImaging-Group, Research Unit of Medical Imaging, Physics and Technology, University of Oulu, Oulu, Finland
| | - Ville Raatikainen
- Department of Diagnostic Radiology, Medical Research Center, Oulu University Hospital, Oulu, Finland.,Oulu Functional NeuroImaging-Group, Research Unit of Medical Imaging, Physics and Technology, University of Oulu, Oulu, Finland
| | - Aleksi Rasila
- Department of Diagnostic Radiology, Medical Research Center, Oulu University Hospital, Oulu, Finland.,Oulu Functional NeuroImaging-Group, Research Unit of Medical Imaging, Physics and Technology, University of Oulu, Oulu, Finland
| | - Viola Borchardt
- Department of Diagnostic Radiology, Medical Research Center, Oulu University Hospital, Oulu, Finland.,Oulu Functional NeuroImaging-Group, Research Unit of Medical Imaging, Physics and Technology, University of Oulu, Oulu, Finland
| | - Vesa Korhonen
- Department of Diagnostic Radiology, Medical Research Center, Oulu University Hospital, Oulu, Finland.,Oulu Functional NeuroImaging-Group, Research Unit of Medical Imaging, Physics and Technology, University of Oulu, Oulu, Finland
| | - Pierre LeVan
- Faculty of Medicine, Department of Radiology - Medical Physics, University Medical Center Freiburg, University of Freiburg, Freiburg, Germany
| | - Maiken Nedergaard
- Center for Translational Neuromedicine, Department of Neurosurgery, University of Rochester, Rochester, New York.,Faculty of Health and Medical Sciences, Center for Basic and Translational Neuroscience, University of Copenhagen, Copenhagen, Denmark
| | - Vesa Kiviniemi
- Department of Diagnostic Radiology, Medical Research Center, Oulu University Hospital, Oulu, Finland.,Oulu Functional NeuroImaging-Group, Research Unit of Medical Imaging, Physics and Technology, University of Oulu, Oulu, Finland
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16
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Keinänen T, Rytky S, Korhonen V, Huotari N, Nikkinen J, Tervonen O, Palva JM, Kiviniemi V. Fluctuations of the EEG-fMRI correlation reflect intrinsic strength of functional connectivity in default mode network. J Neurosci Res 2018; 96:1689-1698. [PMID: 29761531 DOI: 10.1002/jnr.24257] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2018] [Revised: 04/20/2018] [Accepted: 04/23/2018] [Indexed: 01/14/2023]
Abstract
Both functional magnetic resonance imaging (fMRI) and electrophysiological recordings have revealed that resting-state functional connectivity is temporally variable in human brain. Combined full-band electroencephalography-fMRI (fbEEG-fMRI) studies have shown that infraslow (<.1 Hz) fluctuations in EEG scalp potential are correlated with the blood-oxygen-level-dependent (BOLD) fMRI signals and that also this correlation appears variable over time. Here, we used simultaneous fbEEG-fMRI to test the hypothesis that correlation dynamics between BOLD and fbEEG signals could be explained by fluctuations in the activation properties of resting-state networks (RSNs) such as the extent or strength of their activation. We used ultrafast magnetic resonance encephalography (MREG) fMRI to enable temporally accurate and statistically robust short-time-window comparisons of infra-slow fbEEG and BOLD signals. We found that the temporal fluctuations in the fbEEG-BOLD correlation were dependent on RSN connectivity strength, but not on the mean signal level or magnitude of RSN activation or motion during scanning. Moreover, the EEG-fMRI correlations were strongest when the intrinsic RSN connectivity was strong and close to the pial surface. Conversely, weak fbEEG-BOLD correlations were attributable to periods of less coherent or spatially more scattered intrinsic RSN connectivity, or RSN activation in deeper cerebral structures. The results thus show that the on-average low correlations between infra-slow EEG and BOLD signals are, in fact, governed by the momentary coherence and depth of the underlying RSN activation, and may reach systematically high values with appropriate source activities. These findings further consolidate the notion of slow scalp potentials being directly coupled to hemodynamic fluctuations.
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Affiliation(s)
- Tuija Keinänen
- Oulu Functional NeuroImaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland.,Department of Clinical Neurophysiology, Oulu University Hospital, Oulu, Finland
| | - Seppo Rytky
- Department of Clinical Neurophysiology, Oulu University Hospital, Oulu, Finland
| | - Vesa Korhonen
- Oulu Functional NeuroImaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland
| | - Niko Huotari
- Oulu Functional NeuroImaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland
| | - Juha Nikkinen
- Department of Oncology and Radiotherapy, Oulu University Hospital, Oulu, Finland
| | - Osmo Tervonen
- Oulu Functional NeuroImaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland
| | - J Matias Palva
- Neuroscience Center, Helsinki Institute of Life Science, University of Helsinki, Helsinki, Finland
| | - Vesa Kiviniemi
- Oulu Functional NeuroImaging (OFNI), Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland
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17
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Lennartz C, Schiefer J, Rotter S, Hennig J, LeVan P. Sparse Estimation of Resting-State Effective Connectivity From fMRI Cross-Spectra. Front Neurosci 2018; 12:287. [PMID: 29867310 PMCID: PMC5951985 DOI: 10.3389/fnins.2018.00287] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2017] [Accepted: 04/11/2018] [Indexed: 01/01/2023] Open
Abstract
In functional magnetic resonance imaging (fMRI), functional connectivity is conventionally characterized by correlations between fMRI time series, which are intrinsically undirected measures of connectivity. Yet, some information about the directionality of network connections can nevertheless be extracted from the matrix of pairwise temporal correlations between all considered time series, when expressed in the frequency-domain as a cross-spectral density matrix. Using a sparsity prior, it then becomes possible to determine a unique directed network topology that best explains the observed undirected correlations, without having to rely on temporal precedence relationships that may not be valid in fMRI. Applying this method on simulated data with 100 nodes yielded excellent retrieval of the underlying directed networks under a wide variety of conditions. Importantly, the method did not depend on temporal precedence to establish directionality, thus reducing susceptibility to hemodynamic variability. The computational efficiency of the algorithm was sufficient to enable whole-brain estimations, thus circumventing the problem of missing nodes that otherwise occurs in partial-brain analyses. Applying the method to real resting-state fMRI data acquired with a high temporal resolution, the inferred networks showed good consistency with structural connectivity obtained from diffusion tractography in the same subjects. Interestingly, this agreement could also be seen when considering high-frequency rather than low-frequency connectivity (average correlation: r = 0.26 for f < 0.3 Hz, r = 0.43 for 0.3 < f < 5 Hz). Moreover, this concordance was significantly better (p < 0.05) than for networks obtained with conventional functional connectivity based on correlations (average correlation r = 0.18). The presented methodology thus appears to be well-suited for fMRI, particularly given its lack of explicit dependence on temporal lag structure, and is readily applicable to whole-brain effective connectivity estimation.
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Affiliation(s)
- Carolin Lennartz
- Department of Radiology, Medical Physics, Medical Center, University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.,BrainLinks-BrainTools Cluster of Excellence, University of Freiburg, Freiburg, Germany
| | - Jonathan Schiefer
- BrainLinks-BrainTools Cluster of Excellence, University of Freiburg, Freiburg, Germany.,Bernstein Center Freiburg & Faculty of Biology, University of Freiburg, Freiburg, Germany
| | - Stefan Rotter
- BrainLinks-BrainTools Cluster of Excellence, University of Freiburg, Freiburg, Germany.,Bernstein Center Freiburg & Faculty of Biology, University of Freiburg, Freiburg, Germany
| | - Jürgen Hennig
- Department of Radiology, Medical Physics, Medical Center, University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.,BrainLinks-BrainTools Cluster of Excellence, University of Freiburg, Freiburg, Germany
| | - Pierre LeVan
- Department of Radiology, Medical Physics, Medical Center, University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.,BrainLinks-BrainTools Cluster of Excellence, University of Freiburg, Freiburg, Germany
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18
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Ofer I, Jacobs J, Jaiser N, Akin B, Hennig J, Schulze-Bonhage A, LeVan P. Cognitive and behavioral comorbidities in Rolandic epilepsy and their relation with default mode network's functional connectivity and organization. Epilepsy Behav 2018; 78:179-186. [PMID: 29103838 DOI: 10.1016/j.yebeh.2017.10.013] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/11/2017] [Revised: 04/27/2017] [Accepted: 10/13/2017] [Indexed: 01/18/2023]
Abstract
OBJECTIVE Rolandic epilepsy (RE) is characterized by typical interictal-electroencephalogram (EEG) patterns mainly localized in centrotemporal and parietooccipital areas. An aberrant intrinsic organization of the default mode network (DMN) due to repeated disturbances from spike-generating areas may be able to account for specific cognitive deficits and behavioral problems in RE. The aim of the present study was to investigate cognitive development (CD) and socioemotional development (SED) in patients with RE during active disease in relation to DMN connectivity and network topology. METHODS In 10 children with RE and active EEG, CD was assessed using the Wechsler Intelligence Scale for Children-IV (WISC-IV); SED was assessed using the Fünf-Faktoren-Fragebogen für Kinder (FFFK), a Big-Five inventory for the assessment of personality traits in children. Functional connectivity (FC) in the DMN was determined from a 15-minute resting state functional magnetic resonance imaging (fMRI), and network properties were calculated using standard graph-theoretical measures. RESULTS More severe deficits of verbal abilities tended to be associated with an earlier age at epilepsy onset, but were not directly related to the number of seizures and disease duration. Nonetheless, at the network level, disease duration was associated with alterations of the efficiency and centrality of parietal network nodes and midline structures. Particularly, centrality of the left inferior parietal lobe (IPL) was found to be linked with CD. Reduced centrality of the left IPL and alterations supporting a rather segregated processing within DMN's subsystems was associated with a more favorable CD. A more complicated SED was associated with high seizure frequency and long disease duration, and revealed links with a less favorable CD. SIGNIFICANCE An impaired CD and - because of their interrelation - SED might be mediated by a common pathomechanism reflected in an aberrant organization, and thus, a potential functional deficit of the DMN. A functional segregation of (left) parietal network nodes from the DMN and a rather segregated processing mode within the DMN might have positive implications/protective value for CD in patients with RE.
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Affiliation(s)
- Isabell Ofer
- Epilepsy Center, Medical Center - University of Freiburg, Germany; Faculty of Medicine, University of Freiburg, Germany.
| | - Julia Jacobs
- Epilepsy Center, Medical Center - University of Freiburg, Germany; Faculty of Medicine, University of Freiburg, Germany; Clinic for neuropediatrics and muscular diseases, Medical Center - University of Freiburg, Germany
| | - Nathalie Jaiser
- Faculty of Medicine, University of Freiburg, Germany; Clinic for neuropediatrics and muscular diseases, Medical Center - University of Freiburg, Germany
| | - Burak Akin
- Faculty of Medicine, University of Freiburg, Germany; Clinic for Radiology, Medical Physics, Medical Center - University of Freiburg, Germany
| | - Jürgen Hennig
- Faculty of Medicine, University of Freiburg, Germany; Clinic for Radiology, Medical Physics, Medical Center - University of Freiburg, Germany
| | - Andreas Schulze-Bonhage
- Epilepsy Center, Medical Center - University of Freiburg, Germany; Faculty of Medicine, University of Freiburg, Germany
| | - Pierre LeVan
- Faculty of Medicine, University of Freiburg, Germany; Clinic for Radiology, Medical Physics, Medical Center - University of Freiburg, Germany
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19
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Simultaneous multi-slice inverse imaging of the human brain. Sci Rep 2017; 7:17019. [PMID: 29208906 PMCID: PMC5717110 DOI: 10.1038/s41598-017-16976-0] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2017] [Accepted: 11/20/2017] [Indexed: 11/26/2022] Open
Abstract
Ultrafast functional magnetic resonance imaging (fMRI) can measure blood oxygen level dependent (BOLD) signals with high sensitivity and specificity. Here we propose a novel method: simultaneous multi-slice inverse imaging (SMS-InI) — a combination of simultaneous multi-slice excitation, simultaneous echo refocusing (SER), blipped controlled aliasing in parallel imaging echo-planar imaging (EPI), and regularized image reconstruction. Using a 32-channel head coil array on a 3 T scanner, SMS-InI achieves nominal isotropic 5-mm spatial resolution and 10 Hz sampling rate at the whole-brain level. Compared with traditional inverse imaging, we found that SMS-InI has higher spatial resolution with lower signal leakage and higher time-domain signal-to-noise ratio with the optimized regularization parameter in the reconstruction. SMS-InI achieved higher effective resolution and higher detection power in detecting visual cortex activity than InI. SMS-InI also detected subcortical fMRI signals with the similar sensitivity and localization accuracy like EPI. The spatiotemporal resolution of SMS-InI was used to reveal that presenting visual stimuli with 0.2 s latency between left and right visual hemifield led to 0.2 s relative hemodynamic response latency between the left and right visual cortices. Together, these results indicate that SMS-InI is a useful tool in measuring cortical and subcortical hemodynamic responses with high spatiotemporal resolution.
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20
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Fagundes J, Longo MG, Huang SY, Rosen BR, Witzel T, Heberlein K, Gonzalez RG, Schaefer P, Rapalino O. Diagnostic Performance of a 10-Minute Gadolinium-Enhanced Brain MRI Protocol Compared with the Standard Clinical Protocol for Detection of Intracranial Enhancing Lesions. AJNR Am J Neuroradiol 2017; 38:1689-1694. [PMID: 28705816 DOI: 10.3174/ajnr.a5293] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2017] [Accepted: 05/12/2017] [Indexed: 11/07/2022]
Abstract
BACKGROUND AND PURPOSE The development of new MR imaging scanners with stronger gradients and improvement in coil technology, allied with emerging fast imaging techniques, has allowed a substantial reduction in MR imaging scan times. Our goal was to develop a 10-minute gadolinium-enhanced brain MR imaging protocol with accelerated sequences and to evaluate its diagnostic performance compared with the standard clinical protocol. MATERIALS AND METHODS Fifty-three patients referred for brain MR imaging with contrast were scanned with a 3T scanner. Each MR image consisted of 5 basic fast precontrast sequences plus standard and accelerated versions of the same postcontrast T1WI sequences. Two neuroradiologists assessed the image quality and the final diagnosis for each set of postcontrast sequences and compared their performances. RESULTS The acquisition time of the combined accelerated pre- and postcontrast sequences was 10 minutes and 15 seconds; and of the fast postcontrast sequences, 3 minutes and 36 seconds, 46% of the standard sequences. The 10-minute postcontrast axial T1WI had fewer image artifacts (P < .001) and better overall diagnostic quality (P < .001). Although the 10-minute MPRAGE sequence showed a tendency to have more artifacts than the standard sequence (P = .08), the overall diagnostic quality was similar (P = .66). Moreover, there was no statistically significant difference in the diagnostic performance between the protocols. The sensitivity, specificity, and accuracy values for the 10-minute protocol were 100.0%, 88.9%, and 98.1%. CONCLUSIONS The 10-minute brain MR imaging protocol with contrast is comparable in diagnostic performance with the standard protocol in an inpatient motion-prone population, with the additional benefits of reducing acquisition times and image artifacts.
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Affiliation(s)
- J Fagundes
- From the Clínica de Diagnóstico por Imagem (J.F.), Rio de Janeiro, Brazil
| | - M G Longo
- Department of Radiology (M.G.L., S.Y.H., R.G.G., P.S., O.R.), Massachusetts General Hospital, Boston, Massachusetts
| | - S Y Huang
- Department of Radiology (M.G.L., S.Y.H., R.G.G., P.S., O.R.), Massachusetts General Hospital, Boston, Massachusetts
| | - B R Rosen
- Athinoula A. Martinos Center for Biomedical Imaging (B.R.R., T.W.), Charlestown, Massachusetts
| | - T Witzel
- Athinoula A. Martinos Center for Biomedical Imaging (B.R.R., T.W.), Charlestown, Massachusetts
| | - K Heberlein
- Siemens Medical Solutions (K.H.), Malvern, Pennsylvania
| | - R G Gonzalez
- Department of Radiology (M.G.L., S.Y.H., R.G.G., P.S., O.R.), Massachusetts General Hospital, Boston, Massachusetts
| | - P Schaefer
- Department of Radiology (M.G.L., S.Y.H., R.G.G., P.S., O.R.), Massachusetts General Hospital, Boston, Massachusetts
| | - O Rapalino
- Department of Radiology (M.G.L., S.Y.H., R.G.G., P.S., O.R.), Massachusetts General Hospital, Boston, Massachusetts
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Safety and EEG data quality of concurrent high-density EEG and high-speed fMRI at 3 Tesla. PLoS One 2017; 12:e0178409. [PMID: 28552957 PMCID: PMC5446172 DOI: 10.1371/journal.pone.0178409] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2017] [Accepted: 05/13/2017] [Indexed: 11/19/2022] Open
Abstract
PURPOSE Concurrent EEG and fMRI is increasingly used to characterize the spatial-temporal dynamics of brain activity. However, most studies to date have been limited to conventional echo-planar imaging (EPI). There is considerable interest in integrating recently developed high-speed fMRI methods with high-density EEG to increase temporal resolution and sensitivity for task-based and resting state fMRI, and for detecting interictal spikes in epilepsy. In the present study using concurrent high-density EEG and recently developed high-speed fMRI methods, we investigate safety of radiofrequency (RF) related heating, the effect of EEG on cortical signal-to-noise ratio (SNR) in fMRI, and assess EEG data quality. MATERIALS AND METHODS The study compared EPI, multi-echo EPI, multi-band EPI and multi-slab echo-volumar imaging pulse sequences, using clinical 3 Tesla MR scanners from two different vendors that were equipped with 64- and 256-channel MR-compatible EEG systems, respectively, and receive only array head coils. Data were collected in 11 healthy controls (3 males, age range 18-70 years) and 13 patients with epilepsy (8 males, age range 21-67 years). Three of the healthy controls were scanned with the 256-channel EEG system, the other subjects were scanned with the 64-channel EEG system. Scalp surface temperature, SNR in occipital cortex and head movement were measured with and without the EEG cap. The degree of artifacts and the ability to identify background activity was assessed by visual analysis by a trained expert in the 64 channel EEG data (7 healthy controls, 13 patients). RESULTS RF induced heating at the surface of the EEG electrodes during a 30-minute scan period with stable temperature prior to scanning did not exceed 1.0° C with either EEG system and any of the pulse sequences used in this study. There was no significant decrease in cortical SNR due to the presence of the EEG cap (p > 0.05). No significant differences in the visually analyzed EEG data quality were found between EEG recorded during high-speed fMRI and during conventional EPI (p = 0.78). Residual ballistocardiographic artifacts resulted in 58% of EEG data being rated as poor quality. CONCLUSION This study demonstrates that high-density EEG can be safely implemented in conjunction with high-speed fMRI and that high-speed fMRI does not adversely affect EEG data quality. However, the deterioration of the EEG quality due to residual ballistocardiographic artifacts remains a significant constraint for routine clinical applications of concurrent EEG-fMRI.
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22
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Kyathanahally SP, Franco-Watkins A, Zhang X, Calhoun VD, Deshpande G. A Realistic Framework for Investigating Decision Making in the Brain With High Spatiotemporal Resolution Using Simultaneous EEG/fMRI and Joint ICA. IEEE J Biomed Health Inform 2017; 21:814-825. [DOI: 10.1109/jbhi.2016.2590434] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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23
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Hao Y, Khoo HM, von Ellenrieder N, Gotman J. Subject-level reliability analysis of fast fMRI with application to epilepsy. Magn Reson Med 2016; 78:370-382. [PMID: 27487983 DOI: 10.1002/mrm.26365] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2016] [Revised: 06/17/2016] [Accepted: 07/10/2016] [Indexed: 11/12/2022]
Abstract
PURPOSE Recent studies have applied the new magnetic resonance encephalography (MREG) sequence to the study of interictal epileptic discharges (IEDs) in the electroencephalogram (EEG) of epileptic patients. However, there are no criteria to quantitatively evaluate different processing methods, to properly use the new sequence. METHODS We evaluated different processing steps of this new sequence under the common generalized linear model (GLM) framework by assessing the reliability of results. A bootstrap sampling technique was first used to generate multiple replicated data sets; a GLM with different processing steps was then applied to obtain activation maps, and the reliability of these maps was assessed. RESULTS We applied our analysis in an event-related GLM related to IEDs. A higher reliability was achieved by using a GLM with head motion confound regressor with 24 components rather than the usual 6, with an autoregressive model of order 5 and with a canonical hemodynamic response function (HRF) rather than variable latency or patient-specific HRFs. Comparison of activation with IED field also favored the canonical HRF, consistent with the reliability analysis. CONCLUSION The reliability analysis helps to optimize the processing methods for this fast fMRI sequence, in a context in which we do not know the ground truth of activation areas. Magn Reson Med 78:370-382, 2017. © 2016 International Society for Magnetic Resonance in Medicine.
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Affiliation(s)
- Yongfu Hao
- Montréal Neurological Institute, McGill University, Montréal, Canada
| | - Hui Ming Khoo
- Montréal Neurological Institute, McGill University, Montréal, Canada.,Department of Neurosurgery, Osaka University Graduate School of Medicine, Suita, Japan
| | | | - Jean Gotman
- Montréal Neurological Institute, McGill University, Montréal, Canada
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24
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Sojoudi A, Goodyear BG. Statistical inference of dynamic resting-state functional connectivity using hierarchical observation modeling. Hum Brain Mapp 2016; 37:4566-4580. [PMID: 27464464 DOI: 10.1002/hbm.23329] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2015] [Revised: 07/11/2016] [Accepted: 07/18/2016] [Indexed: 11/07/2022] Open
Abstract
Spontaneous fluctuations of blood-oxygenation level-dependent functional magnetic resonance imaging (BOLD fMRI) signals are highly synchronous between brain regions that serve similar functions. This provides a means to investigate functional networks; however, most analysis techniques assume functional connections are constant over time. This may be problematic in the case of neurological disease, where functional connections may be highly variable. Recently, several methods have been proposed to determine moment-to-moment changes in the strength of functional connections over an imaging session (so called dynamic connectivity). Here a novel analysis framework based on a hierarchical observation modeling approach was proposed, to permit statistical inference of the presence of dynamic connectivity. A two-level linear model composed of overlapping sliding windows of fMRI signals, incorporating the fact that overlapping windows are not independent was described. To test this approach, datasets were synthesized whereby functional connectivity was either constant (significant or insignificant) or modulated by an external input. The method successfully determines the statistical significance of a functional connection in phase with the modulation, and it exhibits greater sensitivity and specificity in detecting regions with variable connectivity, when compared with sliding-window correlation analysis. For real data, this technique possesses greater reproducibility and provides a more discriminative estimate of dynamic connectivity than sliding-window correlation analysis. Hum Brain Mapp 37:4566-4580, 2016. © 2016 Wiley Periodicals, Inc.
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Affiliation(s)
- Alireza Sojoudi
- Biomedical Engineering, University of Calgary, Calgary, Alberta, Canada.,Seaman Family MR Research Centre, University of Calgary, Calgary, Alberta, Canada
| | - Bradley G Goodyear
- Biomedical Engineering, University of Calgary, Calgary, Alberta, Canada.,Seaman Family MR Research Centre, University of Calgary, Calgary, Alberta, Canada.,Department of Radiology, University of Calgary, Calgary, Alberta, Canada.,Department of Psychiatry, University of Calgary, Calgary, Alberta, Canada.,Department of Clinical Neurosciences, University of Calgary, Calgary, Alberta, Canada.,Hotchkiss Brain Institute, University of Calgary, Calgary, Alberta, Canada
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25
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LeVan P, Zhang S, Knowles B, Zaitsev M, Hennig J. EEG-fMRI Gradient Artifact Correction by Multiple Motion-Related Templates. IEEE Trans Biomed Eng 2016; 63:2647-2653. [PMID: 27455518 DOI: 10.1109/tbme.2016.2593726] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
OBJECTIVES In simultaneous electroencephalography (EEG) and functional magnetic resonance imaging (fMRI), artifacts on the EEG arise from the switching of magnetic field gradients in the MR scanner. These artifacts depend on head position, and are, therefore, difficult to remove in the presence of subject motion. In this study, gradient artifacts are modeled by multiple templates extracted from externally recorded motion information. METHODS Gradient artifact correction was performed in EEG-fMRI recordings by estimating artifactual templates modulated by slowly varying splines, as well as head position information. The EEG signal quality was then compared following two common methods: averaged artifact subtraction (AAS) and optimal basis sets (OBS). RESULTS Artifact correction using multiple templates estimated from splines or motion time courses outperformed the existing AAS and OBS approaches, as quantified by root-mean-square power across gradient epochs. Improvements were mostly seen in posterior EEG channels, where most of the residual artifacts are seen following the AAS and OBS methods. Residual spectral power was comparable to that of EEG signals recorded without fMRI scanning. CONCLUSION Gradient artifacts can be well modeled by multiple templates estimated from head position information, resulting in an effective artifact removal. SIGNIFICANCE This method can facilitate EEG-fMRI of uncooperative subjects in whom motion is inevitable, for example, to investigate high-frequency EEG activity in which gradient artifacts are particularly prominent.
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Abstract
Ever since the implementation of invasive EEG recordings in the clinical setting, it has been perceived that a considerable proportion of epileptic discharges present at a cortical level are missed by routine scalp EEG recordings. Several in vitro, in vivo, and simulation studies have been performed in the past decades aiming to clarify the interrelations of cortical sources with their scalp and invasive EEG correlates. The amplitude ratio of cortical potentials to their scalp EEG correlates, the extent of the cortical area involved in the discharge, as well as the localization of the cortical source and its geometry have been each independently linked to the recording of the cortical discharge with scalp electrodes. The need to elucidate these interrelations has been particularly imperative in the field of epilepsy surgery with its rapidly growing EEG-based localization technologies. Simultaneous multiscale EEG recordings with scalp, subdural and/or depth electrodes, applied in presurgical epilepsy workup, offer an excellent opportunity to shed some light to this fundamental issue. Whereas past studies have considered predominantly neocortical sources in the context of temporal lobe epilepsy, current investigations have included deep sources, as in mesial temporal epilepsy, as well as extratemporal sources. Novel computational tools may serve to provide surrogates for the shortcomings of EEG recording methodology and facilitate further developments in modern electrophysiology.
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27
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Kiviniemi V, Wang X, Korhonen V, Keinänen T, Tuovinen T, Autio J, LeVan P, Keilholz S, Zang YF, Hennig J, Nedergaard M. Ultra-fast magnetic resonance encephalography of physiological brain activity - Glymphatic pulsation mechanisms? J Cereb Blood Flow Metab 2016; 36:1033-45. [PMID: 26690495 PMCID: PMC4908626 DOI: 10.1177/0271678x15622047] [Citation(s) in RCA: 225] [Impact Index Per Article: 28.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/30/2015] [Accepted: 11/06/2015] [Indexed: 11/16/2022]
Abstract
The theory on the glymphatic convection mechanism of cerebrospinal fluid holds that cardiac pulsations in part pump cerebrospinal fluid from the peri-arterial spaces through the extracellular tissue into the peri-venous spaces facilitated by aquaporin water channels. Since cardiac pulses cannot be the sole mechanism of glymphatic propulsion, we searched for additional cerebrospinal fluid pulsations in the human brain with ultra-fast magnetic resonance encephalography. We detected three types of physiological mechanisms affecting cerebral cerebrospinal fluid pulsations: cardiac, respiratory, and very low frequency pulsations. The cardiac pulsations induce a negative magnetic resonance encephalography signal change in peri-arterial regions that extends centrifugally and covers the brain in ≈1 Hz cycles. The respiratory ≈0.3 Hz pulsations are centripetal periodical pulses that occur dominantly in peri-venous areas. The third type of pulsation was very low frequency (VLF 0.001-0.023 Hz) and low frequency (LF 0.023-0.73 Hz) waves that both propagate with unique spatiotemporal patterns. Our findings using critically sampled magnetic resonance encephalography open a new view into cerebral fluid dynamics. Since glymphatic system failure may precede protein accumulations in diseases such as Alzheimer's dementia, this methodological advance offers a novel approach to image brain fluid dynamics that potentially can enable early detection and intervention in neurodegenerative diseases.
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Affiliation(s)
- Vesa Kiviniemi
- Oulu Functional NeuroImaging, Department of Diagnostic Radiology, MRC, Oulu University Hospital, Oulu, Finland Medical Imaging, Physics and Technology, the Faculty of Medicine, University of Oulu, Oulu, Finland
| | - Xindi Wang
- Oulu Functional NeuroImaging, Department of Diagnostic Radiology, MRC, Oulu University Hospital, Oulu, Finland Medical Imaging, Physics and Technology, the Faculty of Medicine, University of Oulu, Oulu, Finland State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China
| | - Vesa Korhonen
- Oulu Functional NeuroImaging, Department of Diagnostic Radiology, MRC, Oulu University Hospital, Oulu, Finland Medical Imaging, Physics and Technology, the Faculty of Medicine, University of Oulu, Oulu, Finland
| | - Tuija Keinänen
- Oulu Functional NeuroImaging, Department of Diagnostic Radiology, MRC, Oulu University Hospital, Oulu, Finland Medical Imaging, Physics and Technology, the Faculty of Medicine, University of Oulu, Oulu, Finland
| | - Timo Tuovinen
- Oulu Functional NeuroImaging, Department of Diagnostic Radiology, MRC, Oulu University Hospital, Oulu, Finland Medical Imaging, Physics and Technology, the Faculty of Medicine, University of Oulu, Oulu, Finland
| | - Joonas Autio
- Oulu Functional NeuroImaging, Department of Diagnostic Radiology, MRC, Oulu University Hospital, Oulu, Finland Functional Architecture Team, Center for Life Science Technologies, RIKEN, Japan
| | - Pierre LeVan
- Medical Physics, Department of Radiology, University Medical Center Freiburg, Freiburg, Germany
| | - Shella Keilholz
- Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University School of Medicine, Atlanta, GA, USA
| | - Yu-Feng Zang
- Center for Cognition and Brain Disorders, Hangzhou Normal University, Hangzhou, China
| | - Jürgen Hennig
- Medical Physics, Department of Radiology, University Medical Center Freiburg, Freiburg, Germany
| | - Maiken Nedergaard
- School of Medicine and Dentistry, University of Rochester Medical Center, Rochester, NY, USA
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Sahib AK, Mathiak K, Erb M, Elshahabi A, Klamer S, Scheffler K, Focke NK, Ethofer T. Effect of temporal resolution and serial autocorrelations in event-related functional MRI. Magn Reson Med 2016; 76:1805-1813. [DOI: 10.1002/mrm.26073] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2015] [Revised: 10/16/2015] [Accepted: 11/15/2015] [Indexed: 11/07/2022]
Affiliation(s)
- Ashish Kaul Sahib
- Werner Reichardt Centre for Integrative Neuroscience; Tübingen Germany
- Department of Biomedical Magnetic Resonance; University Hospital Tübingen; Tübingen Germany
- Department of Neurology/Epileptology; University Hospital Tübingen and Hertie Institute of Clinical Brain Research; Tübingen Germany
- Graduate School of Neural and Behavioural Sciences/International Max Planck Research School; University of Tübingen; Tübingen Germany
| | - Klaus Mathiak
- Department of Psychiatry, Psychotherapy and Psychosomatics; University Hospital Aachen; Aachen Germany
| | - Michael Erb
- Department of Biomedical Magnetic Resonance; University Hospital Tübingen; Tübingen Germany
| | - Adham Elshahabi
- Department of Neurology/Epileptology; University Hospital Tübingen and Hertie Institute of Clinical Brain Research; Tübingen Germany
- Graduate School of Neural and Behavioural Sciences/International Max Planck Research School; University of Tübingen; Tübingen Germany
- MEG-Center; University of Tübingen; Tübingen Germany
| | - Silke Klamer
- Department of Neurology/Epileptology; University Hospital Tübingen and Hertie Institute of Clinical Brain Research; Tübingen Germany
| | - Klaus Scheffler
- Werner Reichardt Centre for Integrative Neuroscience; Tübingen Germany
- Department of Biomedical Magnetic Resonance; University Hospital Tübingen; Tübingen Germany
- Max-Planck-Institute for Biological Cybernetics; Tübingen Germany
| | - Niels K Focke
- Werner Reichardt Centre for Integrative Neuroscience; Tübingen Germany
- Department of Neurology/Epileptology; University Hospital Tübingen and Hertie Institute of Clinical Brain Research; Tübingen Germany
| | - Thomas Ethofer
- Werner Reichardt Centre for Integrative Neuroscience; Tübingen Germany
- Department of Biomedical Magnetic Resonance; University Hospital Tübingen; Tübingen Germany
- Department of General Psychiatry; University Hospital Tübingen; Tübingen Germany
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Özen AC, Traser L, Echternach M, Dadakova T, Burdumy M, Richter B, Bock M. Ensuring safety and functionality of electroglottography measurements during dynamic pulmonary MRI. Magn Reson Med 2015; 76:1629-1635. [PMID: 26599237 DOI: 10.1002/mrm.26037] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2015] [Revised: 10/14/2015] [Accepted: 10/15/2015] [Indexed: 11/06/2022]
Abstract
PURPOSE To combine vocal tract measurements with dynamic MRI of the lungs to provide fundamental insights into the lung physiology during singing. METHODS To analyze vocal fold oscillatory patterns during dynamic lung MRI, an electroglottography (EGG) system was modified to allow for simultaneous EGG measurements during MR image acquisitions. A low-pass filter was introduced to suppress residual radiofrequency (RF) coupling into the EGG signal. RF heating was tested in a gel phantom to ensure MR safety, and functionality of the EGG device was assessed in a volunteer experiment at singing frequencies from A5 to A3. In the recorded EGG signals, remaining RF interferences were removed by independent component analysis post processing, and standard EGG parameters such as fundamental frequency, contact quotient and jitter were calculated. In a second volunteer experiment, EGG recordings were compared with lung diameter measurements from 2D time-resolved trueFISP acquisitions. RESULTS RF heating measurements resulted in less than 1.2°C temperature increase in the gel phantom. EGG parameters measured during MR imaging are within the range of ideal values. In the lung measurement, both the lung diameter and the EGG recordings could be successfully performed with only minimal interference. CONCLUSION EGG recording is pos sible during dynamic lung MRI, and glottal activity can be studied safely at 1.5T. Magn Reson Med 76:1629-1635, 2016. © 2015 International Society for Magnetic Resonance in Medicine.
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Affiliation(s)
- Ali Caglar Özen
- Department of Radiology-Medical Physics, University Medical Center Freiburg, Germany.
| | - Louisa Traser
- Institute of Musicians Medicine, University Medical Center Freiburg, Germany.,Department of Otolaryngology, University Medical Center Freiburg, Germany
| | - Matthias Echternach
- Institute of Musicians Medicine, University Medical Center Freiburg, Germany
| | - Tetiana Dadakova
- Department of Radiology-Medical Physics, University Medical Center Freiburg, Germany
| | - Michael Burdumy
- Department of Radiology-Medical Physics, University Medical Center Freiburg, Germany
| | - Bernhard Richter
- Institute of Musicians Medicine, University Medical Center Freiburg, Germany
| | - Michael Bock
- Department of Radiology-Medical Physics, University Medical Center Freiburg, Germany
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30
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Jäger V, Dümpelmann M, LeVan P, Ramantani G, Mader I, Schulze-Bonhage A, Jacobs J. Concordance of Epileptic Networks Associated with Epileptic Spikes Measured by High-Density EEG and Fast fMRI. PLoS One 2015; 10:e0140537. [PMID: 26496480 PMCID: PMC4619722 DOI: 10.1371/journal.pone.0140537] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2015] [Accepted: 09/28/2015] [Indexed: 11/18/2022] Open
Abstract
Objective The present study aims to investigate whether a newly developed fast fMRI called MREG (magnetic resonance encephalography) measures metabolic changes related to interictal epileptic discharges (IED). For this purpose BOLD changes are correlated with the IED distribution and variability. Methods Patients with focal epilepsy underwent EEG-MREG using a 64 channel cap. IED voltage maps were generated using 32 and 64 channels and compared regarding their correspondence to the BOLD response. The extents of IEDs (defined as number of channels with >50% of maximum IED negativity) were correlated with the extents of positive and negative BOLD responses. Differences in inter-spike variability were investigated between interictal epileptic discharges (IED) sets with and without concordant positive or negative BOLD responses. Results 17 patients showed 32 separate IED types. In 50% of IED types the BOLD changes could be confirmed by another independent imaging method. The IED extent significantly correlated with the positive BOLD extent (p = 0.04). In 6 patients the 64-channel EEG voltage maps better reflected the positive or negative BOLD response than the 32-channel EEG; in all others no difference was seen. Inter-spike variability was significantly lower in IED sets with than without concordant positive or negative BOLD responses (with p = 0.04). Significance Higher density EEG and fast fMRI seem to improve the value of EEG-fMRI in epilepsy. The correlation of positive BOLD and IED extent could suggest that widespread BOLD responses reflect the IED network. Inter-spike variability influences the likelihood to find IED concordant positive or negative BOLD responses, which is why single IED analysis may be promising.
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Affiliation(s)
- Vera Jäger
- Department of Neuropediatrics and Muscular Diseases, University Medical Center Freiburg, Freiburg, Germany
| | - Matthias Dümpelmann
- Section for Epileptology, University Medical Center Freiburg, Freiburg, Germany
| | - Pierre LeVan
- Medical Physics, University Medical Center Freiburg, Freiburg, Germany
| | - Georgia Ramantani
- Section for Epileptology, University Medical Center Freiburg, Freiburg, Germany
| | - Irina Mader
- Department for Neuroradiology, University Medical Center Freiburg, Freiburg, Germany
| | | | - Julia Jacobs
- Department of Neuropediatrics and Muscular Diseases, University Medical Center Freiburg, Freiburg, Germany
- * E-mail:
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Rajna Z, Kananen J, Keskinarkaus A, Seppänen T, Kiviniemi V. Detection of short-term activity avalanches in human brain default mode network with ultrafast MR encephalography. Front Hum Neurosci 2015; 9:448. [PMID: 26321936 PMCID: PMC4531800 DOI: 10.3389/fnhum.2015.00448] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2015] [Accepted: 07/27/2015] [Indexed: 11/13/2022] Open
Abstract
Recent studies pinpoint visually cued networks of avalanches with MEG/EEG data. Co-activation pattern (CAP) analysis can be used to detect single brain volume activity profiles and hemodynamic fingerprints of neuronal avalanches as sudden high signal activity peaks in classical fMRI data. In this study, we aimed to detect dynamic patterns of brain activity spreads with the use of ultrafast MR encephalography (MREG). MREG achieves 10 Hz whole brain sampling, allowing the estimation of spatial spread of an avalanche, even with the inherent hemodynamic delay of the BOLD signal. We developed a novel computational method to separate avalanche type fast activity spreads from motion artifacts, vasomotor fluctuations, and cardio-respiratory noise in human brain default mode network (DMN). Reproducible and classical DMN sources were identified using spatial ICA prior to advanced noise removal in order to assure that ICA converges to reproducible networks. Brain activity peaks were identified from parts of the DMN, and normalized MREG data around each peak were extracted individually to show dynamic avalanche type spreads as video clips within the DMN. Individual activity spread video clips of specific parts of the DMN were then averaged over the group of subjects. The experiments show that the high BOLD values around the peaks are mostly spreading along the spatial pattern of the particular DMN segment detected with ICA. With also the spread size and lifetime resembling the expected power law distributions, this indicates that the detected peaks are parts of activity avalanches, starting from (or crossing) the DMN. Furthermore, the split, one-sided sub-networks of the DMN show different spread directions within the same DMN framework. The results open possibilities to follow up brain activity avalanches in the hope to understand more about the system wide properties of diseases related to DMN dysfunction.
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Affiliation(s)
- Zalán Rajna
- Biomedical Engineering Research Group, Department of Computer Science and Engineering, Faculty of Information Technology and Electrical Engineering, University of Oulu Oulu, Finland
| | - Janne Kananen
- Oulu Functional Neuroimaging Research Group, Department of Diagnostic Radiology, Medical Research Center, Oulu University Hospital Oulu, Finland
| | - Anja Keskinarkaus
- Biomedical Engineering Research Group, Department of Computer Science and Engineering, Faculty of Information Technology and Electrical Engineering, University of Oulu Oulu, Finland
| | - Tapio Seppänen
- Biomedical Engineering Research Group, Department of Computer Science and Engineering, Faculty of Information Technology and Electrical Engineering, University of Oulu Oulu, Finland
| | - Vesa Kiviniemi
- Oulu Functional Neuroimaging Research Group, Department of Diagnostic Radiology, Medical Research Center, Oulu University Hospital Oulu, Finland
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Safi-Harb M, Proulx S, von Ellenrieder N, Gotman J. Advantages and disadvantages of a fast fMRI sequence in the context of EEG-fMRI investigation of epilepsy patients: A realistic simulation study. Neuroimage 2015; 119:20-32. [PMID: 26093328 DOI: 10.1016/j.neuroimage.2015.06.039] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2015] [Revised: 05/26/2015] [Accepted: 06/13/2015] [Indexed: 10/23/2022] Open
Abstract
EEG-fMRI is an established technique to allow mapping BOLD changes in response to interictal discharges recorded in the EEG of epilepsy patients. Traditional fMRI experiments rely on an echo planar imaging (EPI) sequence with a time resolution given by its time-to-repetition (TR) of ~2 s. Recently, multiple fast fMRI sequences have been developed to get around the limited temporal resolution of the EPI sequence, and achieved a TR in the 100 ms range or lower. One such sequence is called Magnetic Resonance EncephaloGraphy (MREG). Its high temporal resolution should offer increased detection sensitivity and statistical power in the context of epilepsy studies and in fMRI experiments in general. The aim of this work was to investigate the advantages and disadvantages offered by MREG. This was done by superimposing artificial event-related BOLD responses on EPI and MREG background signals, from 5 epileptic patients, that were free of epileptic discharges (spikes) on simultaneously recorded EEG. These functional datasets simulated different spiking rates and hemodynamic response amplitudes, and were analyzed with the commonly used General Linear Model (GLM) with the canonical hemodynamic response function (HRF) as a fixed model of the response. Robustness to violation of the assumptions of the GLM was additionally assessed with similar simulations using variable spike-to-spike response amplitudes and 8 non-canonical HRFs. Consistent with previous work, MREG yields higher maximum statistical t-values than EPI, but our simulations showed these statistics to be inflated, as the false positive rate at a standard threshold was high. At thresholds set to appropriately control specificity, EPI showed better true positive rate and larger cluster size than MREG. However, the lack of an appropriate calibration of the amplitude of the responses across the sequences precludes definitive judgment on their relative sensitivity. In addition, we show that a mismatch between the assumed and actual HRF impairs more MREG detection performance, but that EPI is more affected by non-modeled spike-to-spike variations of response amplitude. Filtering-out physiological noise, which is not aliased at the fast sampling rate of MREG, and the modeling of temporal autocorrelation are advantageous in increasing the detection power of MREG. This simulation study 1) warrants care when interpreting statistical t-values from fast fMRI sequences, 2) proposes thresholds for valid inferences and processing methods for maximal sensitivities, and 3) demonstrates the relative robustness/susceptibility of MREG and EPI to violation of the GLM's assumptions.
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Affiliation(s)
- Mouna Safi-Harb
- Montréal Neurological Institute, McGill University, Montréal, Canada.
| | - Sébastien Proulx
- Montréal Neurological Institute, McGill University, Montréal, Canada
| | | | - Jean Gotman
- Montréal Neurological Institute, McGill University, Montréal, Canada
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Arand C, Scheller E, Seeber B, Timmer J, Klöppel S, Schelter B. Assessing parameter identifiability for dynamic causal modeling of fMRI data. Front Neurosci 2015; 9:43. [PMID: 25750612 PMCID: PMC4335185 DOI: 10.3389/fnins.2015.00043] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2014] [Accepted: 01/31/2015] [Indexed: 11/29/2022] Open
Abstract
Deterministic dynamic causal modeling (DCM) for fMRI data is a sophisticated approach to analyse effective connectivity in terms of directed interactions between brain regions of interest. To date it is difficult to know if acquired fMRI data will yield precise estimation of DCM parameters. Focusing on parameter identifiability, an important prerequisite for research questions on directed connectivity, we present an approach inferring if parameters of an envisaged DCM are identifiable based on information from fMRI data. With the freely available “attention to motion” dataset, we investigate identifiability of two DCMs and show how different imaging specifications impact on identifiability. We used the profile likelihood, which has successfully been applied in systems biology, to assess the identifiability of parameters in a DCM with specified scanning parameters. Parameters are identifiable when minima of the profile likelihood as well as finite confidence intervals for the parameters exist. Intermediate epoch duration, shorter TR and longer session duration generally increased the information content in the data and thus improved identifiability. Irrespective of biological factors such as size and location of a region, attention should be paid to densely interconnected regions in a DCM, as those seem to be prone to non-identifiability. Our approach, available in the DCMident toolbox, enables to judge if the parameters of an envisaged DCM are sufficiently determined by underlying data without priors as opposed to primarily reflecting the Bayesian priors in a SPM–DCM. Assessments with the DCMident toolbox prior to a study will lead to improved identifiability of the parameters and thus might prevent suboptimal data acquisition. Thus, the toolbox can be used as a preprocessing step to provide immediate statements on parameter identifiability.
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Affiliation(s)
- Carolin Arand
- Center for Data Analysis and Modelling (FDM), University of Freiburg Freiburg, Germany ; Department of Physics, University of Freiburg Freiburg, Germany ; Department of Radiology, Medical Physics, University Medical Center Freiburg Freiburg, Germany
| | - Elisa Scheller
- Department of Psychiatry and Psychotherapy, University Medical Center Freiburg Freiburg, Germany ; Freiburg Brain Imaging Center, Departments of Neurology and Psychiatry, University Medical Center Freiburg Freiburg, Germany ; Laboratory for Biological and Personality Psychology, Department of Psychology, University of Freiburg Freiburg, Germany
| | - Benjamin Seeber
- Center for Data Analysis and Modelling (FDM), University of Freiburg Freiburg, Germany
| | - Jens Timmer
- Center for Data Analysis and Modelling (FDM), University of Freiburg Freiburg, Germany ; Department of Physics, University of Freiburg Freiburg, Germany ; BIOSS Center for Biological Signaling Studies, University of Freiburg Freiburg, Germany
| | - Stefan Klöppel
- Department of Psychiatry and Psychotherapy, University Medical Center Freiburg Freiburg, Germany ; Freiburg Brain Imaging Center, Departments of Neurology and Psychiatry, University Medical Center Freiburg Freiburg, Germany ; Department of Neurology, University Medical Center Freiburg Freiburg, Germany
| | - Björn Schelter
- Department of Physics, University of Freiburg Freiburg, Germany ; Department of Neurology, University Medical Center Freiburg Freiburg, Germany ; Institute for Complex Systems and Mathematical Biology, King's College, University of Aberdeen Aberdeen, UK
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Jacobs J, Menzel A, Ramantani G, Körbl K, Assländer J, Schulze-Bonhage A, Hennig J, LeVan P. Negative BOLD in default-mode structures measured with EEG-MREG is larger in temporal than extra-temporal epileptic spikes. Front Neurosci 2014; 8:335. [PMID: 25477775 PMCID: PMC4235409 DOI: 10.3389/fnins.2014.00335] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2014] [Accepted: 10/05/2014] [Indexed: 11/13/2022] Open
Abstract
Introduction: EEG-fMRI detects BOLD changes associated with epileptic interictal discharges (IED) and can identify epileptogenic networks in epilepsy patients. Besides positive BOLD changes, negative BOLD changes have sometimes been observed in the default-mode network, particularly using group analysis. A new fast fMRI sequence called MREG (Magnetic Resonance Encephalography) shows increased sensitivity to detect IED-related BOLD changes compared to the conventional EPI sequence, including frequent occurrence of negative BOLD responses in the DMN. The present study quantifies the concordance between the DMN and negative BOLD related to IEDs of temporal and extra-temporal origin. Methods: Focal epilepsy patients underwent simultaneous EEG-MREG. Areas of overlap were calculated between DMN regions, defined as precuneus, posterior cingulate, bilateral inferior parietal and mesial prefrontal cortices according to a standardized atlas, and significant negative BOLD changes revealed by an event-related analysis based on the timings of IED seen on EEG. Correlation between IED number/lobe of origin and the overlap were calculated. Results: 15 patients were analyzed, some showing IED over more than one location resulting in 30 different IED types. The average overlap between negative BOLD and DMN was significantly larger in temporal (23.7 ± 19.6 cm3) than extra-temporal IEDs (7.4 ± 5.1 cm3, p = 0.008). There was no significant correlation between the number of IEDs and the overlap between DMN structures and negative BOLD areas. Discussion: MREG results in an increased sensitivity to detect negative BOLD responses related to focal IED in single patients, with responses often occurring in DMN regions. In patients with high overlap with the DMN, this suggests that epileptic IEDs may be associated with a brief decrease in attention and cognitive ability. Interestingly this observation was not dependent on the frequency of IED but more common in IED of temporal origin.
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Affiliation(s)
- Julia Jacobs
- Department of Neuropediatrics and Muscular Diseases, University Medical Center Freiburg Freiburg, Germany ; Epilepsy Center, University Medical Center Freiburg Freiburg, Germany
| | - Antonia Menzel
- Department of Neuropediatrics and Muscular Diseases, University Medical Center Freiburg Freiburg, Germany
| | - Georgia Ramantani
- Epilepsy Center, University Medical Center Freiburg Freiburg, Germany
| | - Katharina Körbl
- Department of Neuropediatrics and Muscular Diseases, University Medical Center Freiburg Freiburg, Germany
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Proulx S, Safi-Harb M, LeVan P, An D, Watanabe S, Gotman J. Increased sensitivity of fast BOLD fMRI with a subject-specific hemodynamic response function and application to epilepsy. Neuroimage 2014; 93 Pt 1:59-73. [DOI: 10.1016/j.neuroimage.2014.02.018] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2013] [Revised: 01/14/2014] [Accepted: 02/18/2014] [Indexed: 11/24/2022] Open
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Pittau F, Grouiller F, Spinelli L, Seeck M, Michel CM, Vulliemoz S. The role of functional neuroimaging in pre-surgical epilepsy evaluation. Front Neurol 2014. [PMID: 24715886 DOI: 10.3389/fneur.2014.00031.] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
The prevalence of epilepsy is about 1% and one-third of cases do not respond to medical treatment. In an eligible subset of patients with drug-resistant epilepsy, surgical resection of the epileptogenic zone is the only treatment that can possibly cure the disease. Non-invasive techniques provide information for the localization of the epileptic focus in the majority of cases, whereas in others invasive procedures are required. In the last years, non-invasive neuroimaging techniques, such as simultaneous recording of functional magnetic resonance imaging and electroencephalogram (EEG-fMRI), positron emission tomography (PET), single photon emission computed tomography (SPECT), electric and magnetic source imaging (MSI, ESI), spectroscopy (MRS), have proved their usefulness in defining the epileptic focus. The combination of these functional techniques can yield complementary information and their concordance is crucial for guiding clinical decision, namely the planning of invasive EEG recordings or respective surgery. The aim of this review is to present these non-invasive neuroimaging techniques, their potential combination, and their role in the pre-surgical evaluation of patients with pharmaco-resistant epilepsy.
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Affiliation(s)
- Francesca Pittau
- Presurgical Epilepsy Evaluation Unit, Neurology Department, University Hospital of Geneva , Geneva , Switzerland
| | - Frédéric Grouiller
- Department of Radiology and Medical Informatics, University Hospital of Geneva , Geneva , Switzerland
| | - Laurent Spinelli
- Presurgical Epilepsy Evaluation Unit, Neurology Department, University Hospital of Geneva , Geneva , Switzerland
| | - Margitta Seeck
- Presurgical Epilepsy Evaluation Unit, Neurology Department, University Hospital of Geneva , Geneva , Switzerland
| | - Christoph M Michel
- Functional Brain Mapping Laboratory, Department of Fundamental Neurosciences, University of Geneva , Geneva , Switzerland
| | - Serge Vulliemoz
- Presurgical Epilepsy Evaluation Unit, Neurology Department, University Hospital of Geneva , Geneva , Switzerland
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Pittau F, Grouiller F, Spinelli L, Seeck M, Michel CM, Vulliemoz S. The role of functional neuroimaging in pre-surgical epilepsy evaluation. Front Neurol 2014; 5:31. [PMID: 24715886 PMCID: PMC3970017 DOI: 10.3389/fneur.2014.00031] [Citation(s) in RCA: 66] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2013] [Accepted: 03/06/2014] [Indexed: 12/25/2022] Open
Abstract
The prevalence of epilepsy is about 1% and one-third of cases do not respond to medical treatment. In an eligible subset of patients with drug-resistant epilepsy, surgical resection of the epileptogenic zone is the only treatment that can possibly cure the disease. Non-invasive techniques provide information for the localization of the epileptic focus in the majority of cases, whereas in others invasive procedures are required. In the last years, non-invasive neuroimaging techniques, such as simultaneous recording of functional magnetic resonance imaging and electroencephalogram (EEG-fMRI), positron emission tomography (PET), single photon emission computed tomography (SPECT), electric and magnetic source imaging (MSI, ESI), spectroscopy (MRS), have proved their usefulness in defining the epileptic focus. The combination of these functional techniques can yield complementary information and their concordance is crucial for guiding clinical decision, namely the planning of invasive EEG recordings or respective surgery. The aim of this review is to present these non-invasive neuroimaging techniques, their potential combination, and their role in the pre-surgical evaluation of patients with pharmaco-resistant epilepsy.
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Affiliation(s)
- Francesca Pittau
- Presurgical Epilepsy Evaluation Unit, Neurology Department, University Hospital of Geneva , Geneva , Switzerland
| | - Frédéric Grouiller
- Department of Radiology and Medical Informatics, University Hospital of Geneva , Geneva , Switzerland
| | - Laurent Spinelli
- Presurgical Epilepsy Evaluation Unit, Neurology Department, University Hospital of Geneva , Geneva , Switzerland
| | - Margitta Seeck
- Presurgical Epilepsy Evaluation Unit, Neurology Department, University Hospital of Geneva , Geneva , Switzerland
| | - Christoph M Michel
- Functional Brain Mapping Laboratory, Department of Fundamental Neurosciences, University of Geneva , Geneva , Switzerland
| | - Serge Vulliemoz
- Presurgical Epilepsy Evaluation Unit, Neurology Department, University Hospital of Geneva , Geneva , Switzerland
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Ramantani G, Dümpelmann M, Koessler L, Brandt A, Cosandier-Rimélé D, Zentner J, Schulze-Bonhage A, Maillard LG. Simultaneous subdural and scalp EEG correlates of frontal lobe epileptic sources. Epilepsia 2014; 55:278-88. [DOI: 10.1111/epi.12512] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/14/2013] [Indexed: 11/26/2022]
Affiliation(s)
| | | | - Laurent Koessler
- Research Center for Automatic Control (CRAN); University of Lorraine; CNRS; UMR 7039; Vandoeuvre France
| | - Armin Brandt
- Epilepsy Center; University Hospital Freiburg; Freiburg Germany
| | | | - Josef Zentner
- Department of Neurosurgery; University Hospital Freiburg; Freiburg Germany
| | | | - Louis Georges Maillard
- Research Center for Automatic Control (CRAN); University of Lorraine; CNRS; UMR 7039; Vandoeuvre France
- Department of Neurology, Central University Hospital; CHU de Nancy; Nancy France
- Medical Faculty; University of Lorraine; Nancy France
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