Oxygen extraction fraction mapping with multi-parametric quantitative BOLD MRI: Reduced transverse relaxation bias using 3D-GraSE imaging

Pial collaterals limit stroke progression and metabolic stress in hypoperfused tissue: An MRI perfusion and mq-BOLD study

BACKGROUND AND PURPOSE

In acute ischemic stroke (AIS) due to large-vessel occlusion (LVO), the relationship between cerebral oxygen extraction fraction (OEF) as the hallmark of the ischemic penumbra and leptomeningeal collateral supply is not well established. We aimed to investigate the relationship between pial collateralization and tissue oxygen extraction in patients with LVO using magnetic resonance imaging (MRI).

METHODS

Data from 14 patients with anterior circulation LVO who underwent MRI before acute stroke treatment were analyzed. In addition to diffusion-weighted imaging and perfusion-weighted imaging (PWI), the protocol comprised sequences for multiparametric quantitative blood-oxygen-level-dependent imaging for the calculation of relative OEF (rOEF). Pial collateral supply was quantitatively assessed by analyzing the signal variance in T2*-weighted PWI time series. Relationships between collateral supply, infarct volume, rOEF in peri-infarct hypoperfused tissue, and clinical stroke severity were assessed.

RESULTS

The PWI-based parameter quantifying collateral supply was negatively correlated with baseline ischemic core volume and rOEF in the hypoperfused peri-infarct area (p < .01). Both reduced collateral supply and increased rOEF correlated significantly with higher scores on the National Institutes of Health Stroke Scale (p < .05). Increased rOEF within hypoperfused tissue was associated with higher baseline (p = .043) and follow-up infarct volume (p = .009).

CONCLUSIONS

Signal variance-based mapping of collaterals with PWI depicts pial collateral supply, which is closely tied to tissue pathophysiology and clinical and imaging outcomes. Magnetic-resonance-derived mapping of cerebral rOEF reveals penumbral characteristics of hypoperfused tissue and might provide a promising imaging biomarker in AIS.

Cerebral oxygen metabolism from MRI susceptibility

This article provides an overview of MRI methods exploiting magnetic susceptibility properties of blood to assess cerebral oxygen metabolism, including the tissue oxygen extraction fraction (OEF) and the cerebral metabolic rate of oxygen (CMRO2). The first section is devoted to describing blood magnetic susceptibility and its effect on the MRI signal. Blood circulating in the vasculature can have diamagnetic (oxyhemoglobin) or paramagnetic properties (deoxyhemoglobin). The overall balance between oxygenated and deoxygenated hemoglobin determines the induced magnetic field which, in turn, modulates the transverse relaxation decay of the MRI signal via additional phase accumulation. The following sections of this review then illustrate the principles underpinning susceptibility-based techniques for quantifying OEF and CMRO2. Here, it is detailed whether these techniques provide global (OxFlow) or local (Quantitative Susceptibility Mapping - QSM, calibrated BOLD - cBOLD, quantitative BOLD - qBOLD, QSM+qBOLD) measurements of OEF or CMRO2, and what signal components (magnitude or phase) and tissue pools they consider (intravascular or extravascular). Validations studies and potential limitations of each method are also described. The latter include (but are not limited to) challenges in the experimental setup, the accuracy of signal modeling, and assumptions on the measured signal. The last section outlines the clinical uses of these techniques in healthy aging and neurodegenerative diseases and contextualizes these reports relative to results from gold-standard PET.

Phase-shifted transverse relaxation orientation dependences in human brain white matter

This work aimed to demonstrate an essential phase shift ε 0 $$ {\varepsilon}_0 $$ for better quantifying R 2 $$ {R}_2 $$ and R 2 * $$ {R}_2^{\ast } $$ in human brain white matter (WM), and to further elucidate its origin related to the directional diffusivities from standard diffusion tensor imaging (DTI). ε 0 $$ {\varepsilon}_0 $$ was integrated into a proposed generalized transverse relaxation model for characterizing previously published R 2 $$ {R}_2 $$ and R 2 * $$ {R}_2^{\ast } $$ orientation dependence profiles in brain WM, and then comparisons were made with those without ε 0 $$ {\varepsilon}_0 $$ . It was theorized that anisotropic diffusivity direction ε $$ \varepsilon $$ was collinear with an axon fiber subject to all eigenvalues and eigenvectors from an apparent diffusion tensor. To corroborate the origin of ε 0 $$ {\varepsilon}_0 $$ , R 2 $$ {R}_2 $$ orientation dependences referenced by ε $$ \varepsilon $$ were compared with those referenced by the standard principal diffusivity direction Φ $$ \Phi $$ at b-values of 1000 and 2500 (s/mm² ). These R 2 $$ {R}_2 $$ orientation dependences were obtained from T 2 $$ {T}_2 $$ -weighted images (b = 0) of ultrahigh-resolution Connectome DTI datasets in the public domain. A normalized root-mean-square error ( NRMSE % $$ NRMSE\% $$ ) and an F $$ F $$ -test were used for evaluating curve-fittings, and statistical significance was considered to be a p of 0.05 or less. A phase-shifted model resulted in significantly reduced NRMSE % $$ NRMSE\% $$ compared with that without ε 0 $$ {\varepsilon}_0 $$ in quantifying various R 2 $$ {R}_2 $$ and R 2 * $$ {R}_2^{\ast } $$ profiles, both in vivo and ex vivo at multiple B 0 $$ {B}_0 $$ fields. The R 2 $$ {R}_2 $$ profiles based on Φ $$ \Phi $$ manifested a right-shifted phase ( ε 0 > 0 $$ {\varepsilon}_0>0 $$ ) at two b-values, while those based on ε $$ \varepsilon $$ became free from ε 0 $$ {\varepsilon}_0 $$ . For all phase-shifted R 2 $$ {R}_2 $$ and R 2 * $$ {R}_2^{\ast } $$ profiles, ε 0 $$ {\varepsilon}_0 $$ generally depended on the directional diffusivities by tan - 1 D ⊥ / D ∥ $$ {\tan}^{-1}\left({D}_{\perp }/{D}_{\parallel}\right) $$ , as predicted. In summary, a ubiquitous phase shift ε 0 $$ {\varepsilon}_0 $$ has been demonstrated as a prerequisite for better quantifying transverse relaxation orientation dependences in human brain WM. Furthermore, the origin of ε 0 $$ {\varepsilon}_0 $$ associated with the directional diffusivities from DTI has been elucidated. These findings could have a significant impact on interpretations of prior R 2 $$ {R}_2 $$ and R 2 * $$ {R}_2^{\ast } $$ datasets and on future research.

Measurement of Cerebral Oxygen Extraction Fraction Using Quantitative BOLD Approach: A Review

Quantification of brain oxygenation and metabolism, both of which are indicators of the level of brain activity, plays a vital role in understanding the cerebral perfusion and the pathophysiology of brain disorders. Magnetic resonance imaging (MRI), a widely used clinical imaging technique, which is very sensitive to magnetic susceptibility, has the possibility of substituting positron emission tomography (PET) in measuring oxygen metabolism. This review mainly focuses on the quantitative blood oxygenation level-dependent (qBOLD) method for the evaluation of oxygen extraction fraction (OEF) in the brain. Here, we review the theoretic basis of qBOLD, as well as existing acquisition and quantification methods. Some published clinical studies are also presented, and the pros and cons of qBOLD method are discussed as well.

Mapping oxidative metabolism in the human brain with calibrated fMRI in health and disease

Conventional functional MRI (fMRI) with blood-oxygenation level dependent (BOLD) contrast is an important tool for mapping human brain activity non-invasively. Recent interest in quantitative fMRI has renewed the importance of oxidative neuroenergetics as reflected by cerebral metabolic rate of oxygen consumption (CMR_O2) to support brain function. Dynamic CMR_O2 mapping by calibrated fMRI require multi-modal measurements of BOLD signal along with cerebral blood flow (CBF) and/or volume (CBV). In human subjects this "calibration" is typically performed using a gas mixture containing small amounts of carbon dioxide and/or oxygen-enriched medical air, which are thought to produce changes in CBF (and CBV) and BOLD signal with minimal or no CMR_O2 changes. However non-human studies have demonstrated that the "calibration" can also be achieved without gases, revealing good agreement between CMR_O2 changes and underlying neuronal activity (e.g., multi-unit activity and local field potential). Given the simpler set-up of gas-free calibrated fMRI, there is evidence of recent clinical applications for this less intrusive direction. This up-to-date review emphasizes technological advances for such translational gas-free calibrated fMRI experiments, also covering historical progression of the calibrated fMRI field that is impacting neurological and neurodegenerative investigations of the human brain.

Cerebral oxygen extraction fraction MRI: Techniques and applications

The human brain constitutes 2% of the body's total mass but uses 20% of the oxygen. The rate of the brain's oxygen utilization can be derived from a knowledge of cerebral blood flow and the oxygen extraction fraction (OEF). Therefore, OEF is a key physiological parameter of the brain's function and metabolism. OEF has been suggested to be a useful biomarker in a number of brain diseases. With recent advances in MRI techniques, several MRI-based methods have been developed to measure OEF in the human brain. These MRI OEF techniques are based on the T₂ of blood, the blood signal phase, the magnetic susceptibility of blood-containing voxels, the effect of deoxyhemoglobin on signal behavior in extravascular tissue, and the calibration of the BOLD signal using gas inhalation. Compared to ¹⁵ O PET, which is considered the "gold standard" for OEF measurement, MRI-based techniques are non-invasive, radiation-free, and are more widely available. This article provides a review of these emerging MRI-based OEF techniques. We first briefly introduce the role of OEF in brain oxygen homeostasis. We then review the methodological aspects of different categories of MRI OEF techniques, including their signal mechanisms, acquisition methods, and data analyses. The strengths and limitations of the techniques are discussed. Finally, we review key applications of these techniques in physiological and pathological conditions.

Exploration of CT Images Based on the BN-U-net-W Network Segmentation Algorithm in Glioma Surgery

This study aimed to explore the application value of computed tomography (CT) imaging features based on the deep learning batch normalization (batch normalization, BN) U-net-W network image segmentation algorithm in evaluating and diagnosing glioma surgery. 72 patients with glioma who were admitted to hospital were selected as the research subjects. They were divided into a low-grade group (grades I-II, N = 27 cases) and high-grade group (grades III-IV, N = 45 cases) according to postoperative pathological examination results. The CT perfusion imaging (CTPI) images of patients were processed by using the deep learning-based BN-U-net-W network image segmentation algorithm. The application value of the algorithm was comprehensively evaluated by comparing the average Dice coefficient, average recall rate, and average precision of the BN-U-net-W network image segmentation algorithm with the U-net and BN-U-net network algorithms. The results showed that the Dice coefficient, recall, and precision of the BN-U-net-W network were 86.31%, 88.43%, and 87.63% respectively, which were higher than those of the U-net and BN-U-net networks, and the differences were statistically significant (P < 0.05). Cerebral blood flow (CBF), cerebral blood volume (CBV), and capillary permeability (PMB) in the glioma area were 56.85 mL/(min·100 g), 18.03 mL/(min·100 g), and 8.57 mL/100 g, respectively, which were significantly higher than those of normal brain tissue, showing statistically significant differences (P < 0.05). The mean transit time (MTT) difference between the two was not statistically significant (P > 0.05). The receiver operating characteristic (ROC) curves of CBF, CBV, and PMB in CTPI parameters of glioma had area under the curve (AUC) of 0.685, 0.724, and 0.921, respectively. PMB parameters were significantly higher than those of CBF and CVB, and the differences were statistically obvious (P < 0.05). It showed that the BN-U-net-W network model had a better image segmentation effect, and CBF, CBV, and PMB showed better sensitivity in diagnosing glioma tissue and normal brain tissue and high-grade and low-grade gliomas, among which PBM showed the highest predictability.

Imaging effective oxygen diffusivity in the human brain with multiparametric magnetic resonance imaging

Cerebrovascular diseases can impair blood circulation and oxygen extraction from the blood. The effective oxygen diffusivity (EOD) of the capillary bed is a potential biomarker of microvascular function that has gained increasing interest, both for clinical diagnosis and for elucidating oxygen transport mechanisms. Models of capillary oxygen transport link EOD to measurable oxygen extraction fraction (OEF) and cerebral blood flow (CBF). In this work, we confirm that two well established mathematical models of oxygen transport yield nearly equivalent EOD maps. Furthermore, we propose an easy-to-implement and clinically applicable multiparametric magnetic resonance imaging (MRI) protocol for quantitative EOD mapping. Our approach is based on imaging OEF and CBF with multiparametric quantitative blood oxygenation level dependent (mq-BOLD) MRI and pseudo-continuous arterial spin labeling (pCASL), respectively. We evaluated the imaging protocol by comparing MRI-EOD maps of 12 young healthy volunteers to PET data from a published study in different individuals. Our results show comparably good correlation between MRI- and PET-derived cortical EOD, OEF and CBF. Importantly, absolute values of MRI and PET showed high accordance for all three parameters. In conclusion, our data indicates feasibility of the proposed MRI protocol for EOD mapping, rendering the method promising for future clinical evaluation of patients with cerebrovascular diseases.