1
|
Ndiaye EHI, Diarra AZ, Diouf FS, Bouganali C, Almeras L, Sokhna C, Diatta G, Parola P. Ornithodoros sonrai Soft Ticks and Associated Bacteria in Senegal. Pathogens 2023; 12:1078. [PMID: 37764886 PMCID: PMC10534570 DOI: 10.3390/pathogens12091078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2023] [Revised: 08/14/2023] [Accepted: 08/21/2023] [Indexed: 09/29/2023] Open
Abstract
The soft ticks, Ornithodoros sonrai, are known as vectors of the tick-borne relapsing fever caused by Borrelia spp. and have also been reported to carry other micro-organisms. The objective of this study was to collect and to identify O. sonrai ticks and to investigate the micro-organisms associated with them. In 2019, an investigation of burrows within human dwellings was conducted in 17 villages in the Niakhar area and in 15 villages in the Sine-Saloum area in the Fatick region of Senegal. Ticks collected from the burrows were identified morphologically and by matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS). Micro-organism screening was performed by bacteria-specific qPCR and some identifications were made by standard PCR and gene sequencing. O. sonrai ticks were found in 100% (17/17) of the villages surveyed in the Niakhar area and in 66% (10/15) of the villages in the Sine-Saloum area. A total of 1275 soft tick specimens were collected from small mammal burrows. The ticks collected were morphologically identified as O. sonrai. About 20% (259/1275) of the specimens were also submitted to MALDI-TOF MS for identification. Among the resulting MS profiles, 87% (139/159) and 95% (95/100) were considered good quality specimens, preserved in alcohol and silica gel, respectively. All spectra of good quality were tested against our MALDI-TOF MS arthropod spectra database and identified as O. sonrai species, corroborating the morphological classification. The carriage of four micro-organisms was detected in the ticks with a high prevalence of Bartonella spp., Anaplasmataceae, and Borrelia spp. of 35, 28, and 26%, respectively, and low carriage of Coxiella burnetii (2%). This study highlights the level of tick infestation in domestic burrows, the inventory of pathogens associated with the O. sonrai tick, and the concern about the potential risk of tick involvement in the transmission of these pathogens in Senegal.
Collapse
Affiliation(s)
- El Hadji Ibrahima Ndiaye
- Faculté des Sciences Médicales et Paramédicales, Aix Marseille Univ IRD, AP-HM, SSA, VITROME, 19–21 Boulevard Jean Moulin, 13005 Marseille, France; (E.H.I.N.); (A.Z.D.); (F.S.D.); (L.A.); (C.S.)
- IHU Méditerranée Infection, 13005 Marseille, France
- VITROME, Campus International IRD-UCAD Hann, Dakar 1386, Senegal; (C.B.); (G.D.)
| | - Adama Zan Diarra
- Faculté des Sciences Médicales et Paramédicales, Aix Marseille Univ IRD, AP-HM, SSA, VITROME, 19–21 Boulevard Jean Moulin, 13005 Marseille, France; (E.H.I.N.); (A.Z.D.); (F.S.D.); (L.A.); (C.S.)
- IHU Méditerranée Infection, 13005 Marseille, France
| | - Fatou Samba Diouf
- Faculté des Sciences Médicales et Paramédicales, Aix Marseille Univ IRD, AP-HM, SSA, VITROME, 19–21 Boulevard Jean Moulin, 13005 Marseille, France; (E.H.I.N.); (A.Z.D.); (F.S.D.); (L.A.); (C.S.)
- IHU Méditerranée Infection, 13005 Marseille, France
- VITROME, Campus International IRD-UCAD Hann, Dakar 1386, Senegal; (C.B.); (G.D.)
| | - Charles Bouganali
- VITROME, Campus International IRD-UCAD Hann, Dakar 1386, Senegal; (C.B.); (G.D.)
| | - Lionel Almeras
- Faculté des Sciences Médicales et Paramédicales, Aix Marseille Univ IRD, AP-HM, SSA, VITROME, 19–21 Boulevard Jean Moulin, 13005 Marseille, France; (E.H.I.N.); (A.Z.D.); (F.S.D.); (L.A.); (C.S.)
- IHU Méditerranée Infection, 13005 Marseille, France
- Unité Parasitologie et Entomologie, Département Microbiologie et Maladies Infectieuses, Institut de Recherche Biomédicale des Armées, 13005 Marseille, France
| | - Cheikh Sokhna
- Faculté des Sciences Médicales et Paramédicales, Aix Marseille Univ IRD, AP-HM, SSA, VITROME, 19–21 Boulevard Jean Moulin, 13005 Marseille, France; (E.H.I.N.); (A.Z.D.); (F.S.D.); (L.A.); (C.S.)
- IHU Méditerranée Infection, 13005 Marseille, France
- VITROME, Campus International IRD-UCAD Hann, Dakar 1386, Senegal; (C.B.); (G.D.)
| | - Georges Diatta
- VITROME, Campus International IRD-UCAD Hann, Dakar 1386, Senegal; (C.B.); (G.D.)
| | - Philippe Parola
- Faculté des Sciences Médicales et Paramédicales, Aix Marseille Univ IRD, AP-HM, SSA, VITROME, 19–21 Boulevard Jean Moulin, 13005 Marseille, France; (E.H.I.N.); (A.Z.D.); (F.S.D.); (L.A.); (C.S.)
- IHU Méditerranée Infection, 13005 Marseille, France
| |
Collapse
|
2
|
Hammoud A, Medkour H, Zgheib R, Louni M, Diatta G, Bassene H, Sambou M, Gaye M, Haddad G, Fenollar F, Sokhna C, Mediannikov O. Bartonella raoultii sp. nov., isolated from infected rodents ( Mastomys erythroleucus) in Senegal. Int J Syst Evol Microbiol 2023; 73. [PMID: 37578895 DOI: 10.1099/ijsem.0.005888] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/16/2023] Open
Abstract
Bartonella species are involved in various human diseases, causing a range of clinical manifestations; animals are considered as the main reservoirs, transmitting diverse species of Bartonella through direct contact and haematophagous insects. Here, we characterize a new species, Bartonella raoultii sp. nov., within the genus Bartonella, using a taxonogenomic polyphasic approach. Strain 094T (= CSUR B1097T=DSM 28004T), isolated from the blood of an infected rodent (Mastomys erythroleucus) in Senegal, is an aerobic and rod-shaped bacterium. The annotated non-contiguous genome sequence is 1 952322 bp long and contains 37.2 mol% G+C content, 1686 protein-coding genes and 50 RNA genes, including seven rRNA genes.
Collapse
Affiliation(s)
- Alissa Hammoud
- IHU Méditerranée Infection, 13005 Marseille, France
- Aix Marseille Univ, IRD, APHM, MEPHI, 13005 Marseille, France
| | - Hacène Medkour
- IHU Méditerranée Infection, 13005 Marseille, France
- Aix Marseille Univ, IRD, APHM, MEPHI, 13005 Marseille, France
| | - Rita Zgheib
- IHU Méditerranée Infection, 13005 Marseille, France
- Aix Marseille Univ, IRD, APHM, VITROME, 13005 Marseille, France
| | - Meriem Louni
- IHU Méditerranée Infection, 13005 Marseille, France
- Aix Marseille Univ, IRD, APHM, VITROME, 13005 Marseille, France
- Faculty of Science, M'Hamed Bougara Boumerdès University, Boumerdès 35000, Algeria
| | - Georges Diatta
- VITROME, Campus International IRD-UCAD Hann, Dakar, Senegal
| | - Hubert Bassene
- VITROME, Campus International IRD-UCAD Hann, Dakar, Senegal
| | - Masse Sambou
- VITROME, Campus International IRD-UCAD Hann, Dakar, Senegal
| | - Mapenda Gaye
- IHU Méditerranée Infection, 13005 Marseille, France
- Aix Marseille Univ, IRD, APHM, MEPHI, 13005 Marseille, France
| | - Gabriel Haddad
- IHU Méditerranée Infection, 13005 Marseille, France
- Aix Marseille Univ, IRD, APHM, MEPHI, 13005 Marseille, France
| | - Florence Fenollar
- IHU Méditerranée Infection, 13005 Marseille, France
- Aix Marseille Univ, IRD, APHM, VITROME, 13005 Marseille, France
| | - Cheikh Sokhna
- IHU Méditerranée Infection, 13005 Marseille, France
- Aix Marseille Univ, IRD, APHM, VITROME, 13005 Marseille, France
| | - Oleg Mediannikov
- IHU Méditerranée Infection, 13005 Marseille, France
- Aix Marseille Univ, IRD, APHM, MEPHI, 13005 Marseille, France
| |
Collapse
|
3
|
Mullins K, Canal E, Ouch P, Prasetyo D, Tagoe J, Attram N, Yeboah C, Kumordjie S, Fox A, Letizia AG, Rachlin A, Nguyen HM, Robinson MT, Vongsouvath M, Davong V, Maxay M, Simons MP, Caranci A, Newton PN, Richards AL, Farris CM. Bartonella Species in Cambodia, Ghana, Laos, and Peru: Results from Vector and Serosurveys. Vector Borne Zoonotic Dis 2023; 23:9-17. [PMID: 36633562 PMCID: PMC7614129 DOI: 10.1089/vbz.2021.0090] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
Abstract
Background: Bartonella species are fastidious gram-negative vector-borne bacteria with a wide range of mammalian reservoirs. While it is understood that some species of Bartonella are human pathogens, the extent of human exposure to Bartonella species (both pathogenic and nonpathogenic) is yet to be fully understood. Materials and Methods: To this end, residual sera from participants enrolled in undifferentiated fever studies in Cambodia, Ghana, Laos, and Peru were screened for the presence of IgG antibodies against Bartonella quintana and Bartonella henselae, using the FOCUS diagnostics Dual Spot- Bartonella IgG Immunofluorescence assay. Forty-eight patients with suspected or confirmed Bartonella bacilliformis exposure or infection in Peru were screened to assess cross-reactivity of the FOCUS assay for IgG against other Bartonella species. Results: Ten of 13 patients with confirmed B. bacilliformis infection were Bartonella-specific IgG positive, and overall, 36/48 of the samples were positive. In addition, 79/206, 44/200, 101/180, and 57/100 of the samples from Peru, Laos, Cambodia, and Ghana, respectively, were Bartonella-specific IgG positive. Furthermore, ectoparasite pools from Cambodia, Laos, and Peru were tested using quantitative real-time PCR (qPCR) for the presence of Bartonella DNA. Of the sand fly pools collected in Peru, 0/196 were qPCR positive; 15/140 flea pools collected in Cambodia were qPCR positive; while 0/105 ticks, 0/22 fleas, and 0/3 louse pools collected in Laos tested positive for Bartonella DNA. Conclusion: Evidence of Bartonella in fleas from Cambodia supports the possibility that humans are exposed to Bartonella through this traditional vector. However, Bartonella species were not found in fleas, ticks, or lice from Laos, or sand flies from Peru. This could account for the lower positive serology among the population in Laos and the strictly localized nature of B. bacilliformis infections in Peru. Human exposure to the Bartonella species and Bartonella as a human pathogen warrants further investigation.
Collapse
Affiliation(s)
- Kristin Mullins
- University of Maryland School of Medicine, Baltimore, Maryland, USA
- Naval Medical Research Center, Silver Spring, Maryland, USA
| | | | - Pidor Ouch
- Naval Medical Research Unit-2, Phnom Penh, Cambodia
| | | | - Janice Tagoe
- Naval Medical Research Unit-3 Ghana Detachment, Accra, Ghana
| | - Naiki Attram
- Naval Medical Research Unit-3 Ghana Detachment, Accra, Ghana
| | - Clara Yeboah
- Naval Medical Research Unit-3 Ghana Detachment, Accra, Ghana
| | | | - Anne Fox
- Naval Medical Research Unit-3 Ghana Detachment, Accra, Ghana
| | | | - Audrey Rachlin
- Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Laos
| | - Hung Manh Nguyen
- Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Laos
| | - Matthew T Robinson
- Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Laos
- Center for Tropical Medicine & Global Health, Nuffield Department of Medicine, Oxford University, Oxford, United Kingdom
| | - Manivanh Vongsouvath
- Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Laos
- Microbiology Laboratory, Mahosot Hospital, Qua Fa Ngum, Vientiane, Lao PDR
| | - Viengmon Davong
- Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Laos
- Microbiology Laboratory, Mahosot Hospital, Qua Fa Ngum, Vientiane, Lao PDR
| | - Mayfong Maxay
- Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Laos
- Center for Tropical Medicine & Global Health, Nuffield Department of Medicine, Oxford University, Oxford, United Kingdom
- Institute of Research and Education Development, University of Health Sciences, Ministry of Health, Vientiane, Lao PDR
| | - Mark P Simons
- Naval Medical Research Center, Silver Spring, Maryland, USA
| | - Angela Caranci
- Northwest Mosquito and Vector Control District, Corona, California, USA
| | - Paul N Newton
- Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Laos
- Center for Tropical Medicine & Global Health, Nuffield Department of Medicine, Oxford University, Oxford, United Kingdom
| | - Allen L Richards
- Naval Medical Research Center, Silver Spring, Maryland, USA
- Uniformed Services University, Bethesda, Maryland, USA
| | | |
Collapse
|
4
|
Krügel M, Król N, Kempf VAJ, Pfeffer M, Obiegala A. Emerging rodent-associated Bartonella: a threat for human health? Parasit Vectors 2022; 15:113. [PMID: 35361285 PMCID: PMC8969336 DOI: 10.1186/s13071-022-05162-5] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2021] [Accepted: 01/11/2022] [Indexed: 01/20/2023] Open
Abstract
Background Species of the genus Bartonella are facultative intracellular alphaproteobacteria with zoonotic potential. Bartonella infections in humans range from mild with unspecific symptoms to life threatening, and can be transmitted via arthropod vectors or through direct contact with infected hosts, although the latter mode of transmission is rare. Among the small mammals that harbour Bartonella spp., rodents are the most speciose group and harbour the highest diversity of these parasites. Human–rodent interactions are not unlikely as many rodent species live in proximity to humans. However, a surprisingly low number of clinical cases of bartonellosis related to rodent-associated Bartonella spp. have thus far been recorded in humans. Methods The main purpose of this review is to determine explanatory factors for this unexpected finding, by taking a closer look at published clinical cases of bartonellosis connected with rodent-associated Bartonella species, some of which have been newly described in recent years. Thus, another focus of this review are these recently proposed species. Conclusions Worldwide, only 24 cases of bartonellosis caused by rodent-associated bartonellae have been reported in humans. Possible reasons for this low number of cases in comparison to the high prevalences of Bartonella in small mammal species are (i) a lack of awareness amongst physicians of Bartonella infections in humans in general, and especially those caused by rodent-associated bartonellae; and (ii) a frequent lack of the sophisticated equipment required for the confirmation of Bartonella infections in laboratories that undertake routine diagnostic testing. As regards recently described Bartonella spp., there are presently 14 rodent-associated Candidatus taxa. In contrast to species which have been taxonomically classified, there is no official process for the review of proposed Candidatus species and their names before they are published. This had led to the use of malformed names that are not based on the International Code of Nomenclature of Prokaryotes. Researchers are thus encouraged to propose Candidatus names to the International Committee on Systematics of Prokaryotes for approval before publishing them, and only to propose new species of Bartonella when the relevant datasets allow them to be clearly differentiated from known species and subspecies. Graphical Abstract ![]()
Supplementary Information The online version contains supplementary material available at 10.1186/s13071-022-05162-5.
Collapse
Affiliation(s)
- Maria Krügel
- Institute of Animal Hygiene and Veterinary Public Health, University of Leipzig, An den Tierkliniken 1, 04103, Leipzig, Germany
| | - Nina Król
- Institute of Animal Hygiene and Veterinary Public Health, University of Leipzig, An den Tierkliniken 1, 04103, Leipzig, Germany
| | - Volkhard A J Kempf
- Institute for Medical Microbiology and Infection Control, University Hospital, Goethe University, Frankfurt am Main, Germany.,National Consiliary Laboratory for Bartonella, Frankfurt am Main, Germany
| | - Martin Pfeffer
- Institute of Animal Hygiene and Veterinary Public Health, University of Leipzig, An den Tierkliniken 1, 04103, Leipzig, Germany
| | - Anna Obiegala
- Institute of Animal Hygiene and Veterinary Public Health, University of Leipzig, An den Tierkliniken 1, 04103, Leipzig, Germany.
| |
Collapse
|
5
|
Demoncheaux JP, Medkour H, Louni M, Laugier L, Pasqualini C, Fenollar F, Davoust B, Mediannikov O. Detection of Potential Zoonotic Bartonella Species in African Giant Rats (Cricetomys gambianus) and Fleas from an Urban Area in Senegal. Microorganisms 2022; 10:microorganisms10030489. [PMID: 35336065 PMCID: PMC8953472 DOI: 10.3390/microorganisms10030489] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Revised: 02/06/2022] [Accepted: 02/15/2022] [Indexed: 11/26/2022] Open
Abstract
Bartonellae are bacteria associated with mammals and their ectoparasites. Rodents often host different species of Bartonella. The aim of this study was to investigate the presence of Bartonella spp. in African giant pouched rats (Cricetomys gambianus) and their ectoparasites in Dakar, Senegal. In 2012, 20 rats were caught, and their fleas were identified. DNA was extracted from 170 selected fleas and qPCR was carried out to detect Bartonella spp. Subsequently, a Bartonella culture was performed from the rat blood samples and the isolated strains (16S rRNA, rpoB, ftsZ and ITS3) were genotyped. A total of 1117 fleas were collected from 19 rats and identified as Xenopsylla cheopis, the tropical rat flea. Bartonella DNA was detected in 148 of 170 selected fleas (87.1%). In addition, Bartonella strains were isolated from the blood of 17 rats (85%). According to Bartonella gene-sequence-based criteria for species definition, the isolated strains were identified as B. massiliensis (four strains) and two potential new species related to the zoonotic B. elizabethae. In this paper, these potentially new species are provisionally called Candidatus Bartonella militaris (11 strains) and Candidatus Bartonella affinis (two strains) until their description has been completed. Cricetomys gambianus and its fleas could constitute a public health risk in Dakar due to the high prevalence of Bartonella infection reported.
Collapse
Affiliation(s)
- Jean-Paul Demoncheaux
- Animal Epidemiology Expert Group of the Military Health Service, 37100 Tours, France; (J.-P.D.); (B.D.)
- Military Health Service, French Armed Forces in Senegal, Dakar 18524, Senegal;
| | - Hacene Medkour
- IRD, AP-HM, MEPHI, Aix Marseille University, 13005 Marseille, France; (H.M.); (M.L.)
- IHU Méditerranée Infection, 13005 Marseille, France; (L.L.); (F.F.)
| | - Meriem Louni
- IRD, AP-HM, MEPHI, Aix Marseille University, 13005 Marseille, France; (H.M.); (M.L.)
- IHU Méditerranée Infection, 13005 Marseille, France; (L.L.); (F.F.)
| | - Laurie Laugier
- IHU Méditerranée Infection, 13005 Marseille, France; (L.L.); (F.F.)
- IRD, AP-HM, SSA, VITROME, Aix Marseille University, 13005 Marseille, France
| | | | - Florence Fenollar
- IHU Méditerranée Infection, 13005 Marseille, France; (L.L.); (F.F.)
- IRD, AP-HM, SSA, VITROME, Aix Marseille University, 13005 Marseille, France
| | - Bernard Davoust
- Animal Epidemiology Expert Group of the Military Health Service, 37100 Tours, France; (J.-P.D.); (B.D.)
- IRD, AP-HM, MEPHI, Aix Marseille University, 13005 Marseille, France; (H.M.); (M.L.)
- IHU Méditerranée Infection, 13005 Marseille, France; (L.L.); (F.F.)
| | - Oleg Mediannikov
- IRD, AP-HM, MEPHI, Aix Marseille University, 13005 Marseille, France; (H.M.); (M.L.)
- IHU Méditerranée Infection, 13005 Marseille, France; (L.L.); (F.F.)
- Correspondence:
| |
Collapse
|
6
|
Mangombi JB, N’dilimabaka N, Lekana-Douki JB, Banga O, Maghendji-Nzondo S, Bourgarel M, Leroy E, Fenollar F, Mediannikov O. First investigation of pathogenic bacteria, protozoa and viruses in rodents and shrews in context of forest-savannah-urban areas interface in the city of Franceville (Gabon). PLoS One 2021; 16:e0248244. [PMID: 33684147 PMCID: PMC7939261 DOI: 10.1371/journal.pone.0248244] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2020] [Accepted: 02/23/2021] [Indexed: 12/29/2022] Open
Abstract
Rodents are reservoirs of numerous zoonotic diseases caused by bacteria, protozoans, or viruses. In Gabon, the circulation and maintenance of rodent-borne zoonotic infectious agents are poorly studied and are often limited to one type of pathogen. Among the three existing studies on this topic, two are focused on a zoonotic virus, and the third is focused on rodent Plasmodium. In this study, we searched for a wide range of bacteria, protozoa and viruses in different organs of rodents from the town of Franceville in Gabon. Samples from one hundred and ninety-eight (198) small mammals captured, including two invasive rodent species, five native rodent species and 19 shrews belonging to the Soricidae family, were screened. The investigated pathogens were bacteria from the Rickettsiaceae and Anaplasmataceae families, Mycoplasma spp., Bartonella spp., Borrelia spp., Orientia spp., Occidentia spp., Leptospira spp., Streptobacillus moniliformis, Coxiella burnetii, and Yersinia pestis; parasites from class Kinetoplastida spp. (Leishmania spp., Trypanosoma spp.), Piroplasmidae spp., and Toxoplasma gondii; and viruses from Paramyxoviridae, Hantaviridae, Flaviviridae and Mammarenavirus spp. We identified the following pathogenic bacteria: Anaplasma spp. (8.1%; 16/198), Bartonella spp. (6.6%; 13/198), Coxiella spp. (5.1%; 10/198) and Leptospira spp. (3.5%; 7/198); and protozoans: Piroplasma sp. (1%; 2/198), Toxoplasma gondii (0.5%; 1/198), and Trypanosoma sp. (7%; 14/198). None of the targeted viral genes were detected. These pathogens were found in Gabonese rodents, mainly Lophuromys sp., Lemniscomys striatus and Praomys sp. We also identified new genotypes: Candidatus Bartonella gabonensis and Uncultured Anaplasma spp. This study shows that rodents in Gabon harbor some human pathogenic bacteria and protozoans. It is necessary to determine whether the identified microorganisms are capable of undergoing zoonotic transmission from rodents to humans and if they may be responsible for human cases of febrile disease of unknown etiology in Gabon.
Collapse
Affiliation(s)
- Joa Braïthe Mangombi
- Centre Interdisciplinaire de Recherches Médicales de Franceville (CIRMF), Franceville, Gabon
- Aix Marseille Univ, IRD, AP-HM, Microbes, VITROME, Marseille, France
- IHU Méditerranée Infection, Marseille, France
| | - Nadine N’dilimabaka
- Centre Interdisciplinaire de Recherches Médicales de Franceville (CIRMF), Franceville, Gabon
- Département de Biologie, Faculté des sciences, Université des Sciences et Techniques de Masuku (USTM), Franceville, Gabon
| | - Jean-Bernard Lekana-Douki
- Centre Interdisciplinaire de Recherches Médicales de Franceville (CIRMF), Franceville, Gabon
- Département de Parasitologie, Université des Sciences de la Santé (USS), Owendo, Libreville
| | - Octavie Banga
- Centre Interdisciplinaire de Recherches Médicales de Franceville (CIRMF), Franceville, Gabon
| | - Sydney Maghendji-Nzondo
- Département Epidémiologie-Biostatistique et Informatique Médicale (DEBIM), Université des Sciences de la Santé (USS), Owendo, Libreville
| | - Mathieu Bourgarel
- CIRAD, UMR ASTRE, Harare, Zimbabwe
- ASTRE, Univ Montpellier, CIRAD, INRA, Montpellier, France
| | - Eric Leroy
- Centre Interdisciplinaire de Recherches Médicales de Franceville (CIRMF), Franceville, Gabon
- UMR MIVEGEC IRD-CNRS-UM, IRD, Montpellier, France
| | - Florence Fenollar
- Aix Marseille Univ, IRD, AP-HM, Microbes, VITROME, Marseille, France
- IHU Méditerranée Infection, Marseille, France
| | - Oleg Mediannikov
- IHU Méditerranée Infection, Marseille, France
- Aix Marseille Univ, IRD, AP-HM, Microbes, MEPHI, Marseille, France
| |
Collapse
|
7
|
Mangombi J, N'Dilimabaka N, Medkour H, Banga O, Tall M, Ben Khedher M, Terras J, Abdi S, Bourgarel M, Leroy E, Fenollar F, Mediannikov O. Bartonella gabonensis sp. nov., a new bartonella species from savannah rodent Lophuromys sp. in Franceville, Gabon. New Microbes New Infect 2020; 38:100796. [PMID: 33294192 PMCID: PMC7689162 DOI: 10.1016/j.nmni.2020.100796] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2020] [Revised: 10/07/2020] [Accepted: 10/14/2020] [Indexed: 11/24/2022] Open
Abstract
We describe a new strain named Bartonella gabonensis sp. nov. strain 669T (CSURB1083). The entire genome of this strain is described here. It was isolated from a savannah rodent, a brush-furred rat (Lophuromys sp.), trapped the city of Franceville in Gabon, in Central Africa. B. gabonensis is an aerobic, rod-shaped and Gram-negative bacterium. On the basis of the organism's features, and following a taxonogenomic approach, we propose the creation of the species Bartonella gabonensis sp. nov.
Collapse
Affiliation(s)
- J.B. Mangombi
- Centre Interdisciplinaire de Recherches Médicales de Franceville (CIRMF), Franceville, Gabon
- Aix-Marseille Université, IRD, APHM, Microbes, VITROME, Marseille, France
- IHU Méditerranée Infection, Marseille, France
| | - N. N'Dilimabaka
- Centre Interdisciplinaire de Recherches Médicales de Franceville (CIRMF), Franceville, Gabon
- Département de Biologie, Université des Sciences et Techniques de Masuku (USTM), Franceville, Gabon
| | - H. Medkour
- IHU Méditerranée Infection, Marseille, France
- Aix-Marseille Université, IRD, APHM, Microbes, MEPHI, Marseille, France
| | - O.L. Banga
- Centre Interdisciplinaire de Recherches Médicales de Franceville (CIRMF), Franceville, Gabon
| | - M.L. Tall
- IHU Méditerranée Infection, Marseille, France
- Aix-Marseille Université, IRD, APHM, Microbes, MEPHI, Marseille, France
| | - M. Ben Khedher
- IHU Méditerranée Infection, Marseille, France
- Aix-Marseille Université, IRD, APHM, Microbes, MEPHI, Marseille, France
| | - J. Terras
- IHU Méditerranée Infection, Marseille, France
- Aix-Marseille Université, IRD, APHM, Microbes, MEPHI, Marseille, France
| | - S. Abdi
- IHU Méditerranée Infection, Marseille, France
- Aix-Marseille Université, IRD, APHM, Microbes, MEPHI, Marseille, France
| | - M. Bourgarel
- ASTRE, Université Montpellier, CIRAD, INRA, Montpellier, France
- UMR MIVEGEC IRDCNRSUM, Institut de Recherche pour le Développement (IRD), Montpellier, France
| | - E. Leroy
- CIRAD, UMR ASTRE, Harare, Zimbabwe
| | - F. Fenollar
- Aix-Marseille Université, IRD, APHM, Microbes, VITROME, Marseille, France
- IHU Méditerranée Infection, Marseille, France
| | - O. Mediannikov
- IHU Méditerranée Infection, Marseille, France
- Aix-Marseille Université, IRD, APHM, Microbes, MEPHI, Marseille, France
| |
Collapse
|
8
|
Celebi B, Anani H, Zgheib R, Carhan A, Raoult D, Fournier PE. Genomic Characterization of the Novel Bartonella refiksaydamii sp. Isolated from the Blood of a Crocidura suaveolens (Pallas, 1811). Vector Borne Zoonotic Dis 2020; 21:432-440. [PMID: 34077294 DOI: 10.1089/vbz.2020.2626] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Bartonella species are reemerging infectious agents that are transmitted by arthropod vectors among animals and/or humans. At least 13 of the 35 currently recognized Bartonella species are pathogenic for humans. Most of the pathogenic species, except Bartonella quintana and Bartonella bacilliformis, are zoonotic agents with animal reservoirs, including cats, dogs, coyotes, foxes, cattle, and rodents. In this study, a novel Bartonella species was isolated from the blood of a Crocidura suaveolens (Pallas, 1811) Lesser shrew that was captured in the Bartın region of Northwestern Turkey. The strain, RSKK 19006, was characterized using whole-genome sequencing and comparison, multilocus sequence typing (gltA, rpoB, ssrA, nuoG, and 16S rRNA) and internal transcribed spacer sequencing, electron microscopy scanning, biochemical tests, and MALDI-TOF MS (matrix assisted laser desorption ionization-time of flight mass spectrometry). This novel Bartonella is a Gram-negative, rod-shaped, microaerophilic bacterium and has neither flagella nor pilus. As a consequence, we propose to name this new species Bartonella refiksaydamii sp. nov. in Bartonella genus. The zoonotic potential of this novel Bartonella species is as yet unknown.
Collapse
Affiliation(s)
- Bekir Celebi
- Zoonotic and Vector-Borne Diseases Department, Ministry of Health, General Directorate of Public Health, Ankara, Turkey
| | - Hussein Anani
- UMR VITROME, Aix-Marseille University, Institut pour la Recherche et le Développement, Service de Santé des Armées, Assistance Publique-Hôpitaux de Marseille, Institut Hospitalo-Universitaire Méditerranée Infection, Marseille, France.,Institut Hospitalo-Universitaire Méditerranée Infection, Marseille, France
| | - Rita Zgheib
- UMR VITROME, Aix-Marseille University, Institut pour la Recherche et le Développement, Service de Santé des Armées, Assistance Publique-Hôpitaux de Marseille, Institut Hospitalo-Universitaire Méditerranée Infection, Marseille, France.,Institut Hospitalo-Universitaire Méditerranée Infection, Marseille, France
| | - Ahmet Carhan
- Medical Biology Department, Faculty of Medicine, Yildirim Beyazit University, Ankara, Turkey
| | - Didier Raoult
- Institut Hospitalo-Universitaire Méditerranée Infection, Marseille, France.,UMR MEPHI, Aix-Marseille University, Institut pour la Recherche et le Développement, Assistance Publique-Hôpitaux de Marseille, Institut Hospitalo-Universitaire Méditerranée Infection, Marseille, France
| | - Pierre-Edouard Fournier
- UMR VITROME, Aix-Marseille University, Institut pour la Recherche et le Développement, Service de Santé des Armées, Assistance Publique-Hôpitaux de Marseille, Institut Hospitalo-Universitaire Méditerranée Infection, Marseille, France.,Institut Hospitalo-Universitaire Méditerranée Infection, Marseille, France
| |
Collapse
|
9
|
Dahmana H, Medkour H, Anani H, Granjon L, Diatta G, Fenollar F, Mediannikov O. Non-contiguous finished genome sequence and description of Bartonella saheliensis sp. nov. from the blood of Gerbilliscus gambianus from Senegal. New Microbes New Infect 2020; 35:100667. [PMID: 32300480 PMCID: PMC7152674 DOI: 10.1016/j.nmni.2020.100667] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2019] [Accepted: 03/06/2020] [Indexed: 11/20/2022] Open
Abstract
Bartonella saheliensis strain 077 (= CSUR B644T; = DSM 28003T) is a new bacterial species isolated from blood of the rodent Gerbilliscus gambianus captured in the Sine-Saloum region of Senegal. In this work we describe the characteristics of this microorganism, as well as the complete sequence of the genome and its annotation. Its genome has 2 327 299 bp (G+C content 38.4%) and codes for 2015 proteins and 53 RNA genes.
Collapse
Affiliation(s)
- H. Dahmana
- Aix Marseille Univ, IRD, AP-HM, MEPHI, Marseille, France
- IHU-Méditerranée Infection, Marseille, France
| | - H. Medkour
- Aix Marseille Univ, IRD, AP-HM, MEPHI, Marseille, France
- IHU-Méditerranée Infection, Marseille, France
| | - H. Anani
- IHU-Méditerranée Infection, Marseille, France
- Aix Marseille Univ, IRD, AP-HM, SSA, VITROME, Marseille, France
| | - L. Granjon
- CBGP, IRD, CIRAD, INRA, Montpellier SupAgro, Univ Montpellier, Montpellier, France
| | - G. Diatta
- Campus Commun UCAD-IRD of Hann, Dakar, Senegal
| | - F. Fenollar
- IHU-Méditerranée Infection, Marseille, France
- Aix Marseille Univ, IRD, AP-HM, SSA, VITROME, Marseille, France
| | - O. Mediannikov
- Aix Marseille Univ, IRD, AP-HM, MEPHI, Marseille, France
- IHU-Méditerranée Infection, Marseille, France
| |
Collapse
|