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de Vries J, de Vries S, Fernie AR. Current and future perspectives for enhancing our understanding of the evolution of plant metabolism. Philos Trans R Soc Lond B Biol Sci 2024; 379:20240253. [PMID: 39343013 PMCID: PMC11439503 DOI: 10.1098/rstb.2024.0253] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2024] [Accepted: 07/16/2024] [Indexed: 10/01/2024] Open
Abstract
The special issue 'The evolution of plant metabolism' has brought together original research, reviews and opinions that cover various aspects from the full breath of plant metabolism including its interaction with the environment including other species. Here, we briefly summarize these efforts and attempts to extract a consensus opinion of the best manner in which to tackle this subject both now and in the future. This article is part of the theme issue 'The evolution of plant metabolism'.
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Affiliation(s)
- Jan de Vries
- Department of Applied Bioinformatics, University of Goettingen, Institute of Microbiology and Genetics, Goldschmidtstr. 1, Goettingen37077, Germany
- University of Goettingen, Campus Institute Data Science (CIDAS), Goldschmidstr.1, Goettingen37077, Germany
- Department of Applied Bioinformatics, University of Goettingen, Goettingen Center for Molecular Biosciences (GZMB), Goldschmidtstr. 1, Goettingen37077, Germany
| | - Sophie de Vries
- Department of Applied Bioinformatics, University of Goettingen, Institute of Microbiology and Genetics, Goldschmidtstr. 1, Goettingen37077, Germany
| | - Alisdair R. Fernie
- Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm14476, Germany
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de Vries S, Feussner I. Biotic interactions, evolutionary forces and the pan-plant specialized metabolism. Philos Trans R Soc Lond B Biol Sci 2024; 379:20230362. [PMID: 39343027 PMCID: PMC11449213 DOI: 10.1098/rstb.2023.0362] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2024] [Revised: 04/30/2024] [Accepted: 05/13/2024] [Indexed: 10/01/2024] Open
Abstract
Plant specialized metabolism has a complex evolutionary history. Some aspects are conserved across the green lineage, but many metabolites are unique to certain lineages. The network of specialized metabolism continuously diversified, simplified or reshaped during the evolution of streptophytes. Many routes of pan-plant specialized metabolism are involved in plant defence. Biotic interactions are recalled as major drivers of lineage-specific metabolomic diversification. However, the consequences of this diversity of specialized metabolism in the context of plant terrestrialization and land plant diversification into the major lineages of bryophytes, lycophytes, ferns, gymnosperms and angiosperms remain only little explored. Overall, this hampers conclusions on the evolutionary scenarios that shaped specialized metabolism. Recent efforts have brought forth new streptophyte model systems, an increase in genetically accessible species from distinct major plant lineages, and new functional data from a diversity of land plants on specialized metabolic pathways. In this review, we will integrate the recent data on the evolution of the plant immune system with the molecular data of specialized metabolism and its recognition. Based on this we will provide a contextual framework of the pan-plant specialized metabolism, the evolutionary aspects that shape it and the impact on adaptation to the terrestrial environment.This article is part of the theme issue 'The evolution of plant metabolism'.
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Affiliation(s)
- Sophie de Vries
- Department of Applied Bioinformatics, Institute for Microbiology and Genetics, University of Goettingen, Goldschmidtstr. 1, Goettingen 37077, Germany
| | - Ivo Feussner
- Department of Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences and Goettingen Center for Molecular Biosciences (GZMB), University of Goettingen, Justus-von-Liebig Weg 11, Goettingen 37077, Germany
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Laffon M, Domont J, Hano C, Lanoue A, Giglioli-Guivarc'h N. Unlocking specialized metabolism in medicinal plant biotechnology through plant-microbiome interactions. CURRENT OPINION IN PLANT BIOLOGY 2024; 82:102620. [PMID: 39241282 DOI: 10.1016/j.pbi.2024.102620] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2024] [Revised: 07/23/2024] [Accepted: 08/05/2024] [Indexed: 09/09/2024]
Abstract
Medicinal plants produce specialized metabolites (SM) that are used as drugs. However, due to low yields of field cultivation and the increasing market demand, this production method often failed to meet supply needs. Biotechnological alternatives, such as in vitro plant cultures, offer promising solutions. Nonetheless, SM production in these systems remains too low for industrial exploitation, necessitating an elicitation step to induce the plant defense metabolism. Traditional elicitation methods mimic environmental conditions that trigger plant-specialized metabolism, often with an artificial signal that mimics microbial interaction. Recent insights into the essential role of the plant microbiota, provides new opportunities for elicitation strategies by microbial coculture in a controlled environment. The successful co-culture of in vitro medicinal plants with synthetic microbial communities could enable sustainable production of pharmaceutically important SM.
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Affiliation(s)
- Malorie Laffon
- Biomolecules and Biotechnologies Végétales, EA2106, University of Tours, 37200, Tours, France; Evonik Advanced Botanicals, 220 Rue Henri Potez, 37210, Parçay-Meslay, France
| | - Justine Domont
- Biomolecules and Biotechnologies Végétales, EA2106, University of Tours, 37200, Tours, France
| | - Christophe Hano
- Institut de Chimie Organique et Analytique, Université d'Orléans-CNRS, UMR 7311 BP 6759, CEDEX 2, Orléans 45067, France
| | - Arnaud Lanoue
- Biomolecules and Biotechnologies Végétales, EA2106, University of Tours, 37200, Tours, France
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Prokisch J, Nguyen DHH, Muthu A, Ferroudj A, Singh A, Agrawal S, Rajput VD, Ghazaryan K, El-Ramady H, Rai M. Carbon Nanodot-Microbe-Plant Nexus in Agroecosystem and Antimicrobial Applications. NANOMATERIALS (BASEL, SWITZERLAND) 2024; 14:1249. [PMID: 39120354 PMCID: PMC11314255 DOI: 10.3390/nano14151249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2024] [Revised: 07/18/2024] [Accepted: 07/23/2024] [Indexed: 08/10/2024]
Abstract
The intensive applications of nanomaterials in the agroecosystem led to the creation of several environmental problems. More efforts are needed to discover new insights in the nanomaterial-microbe-plant nexus. This relationship has several dimensions, which may include the transport of nanomaterials to different plant organs, the nanotoxicity to soil microbes and plants, and different possible regulations. This review focuses on the challenges and prospects of the nanomaterial-microbe-plant nexus under agroecosystem conditions. The previous nano-forms were selected in this study because of the rare, published articles on such nanomaterials. Under the study's nexus, more insights on the carbon nanodot-microbe-plant nexus were discussed along with the role of the new frontier in nano-tellurium-microbe nexus. Transport of nanomaterials to different plant organs under possible applications, and translocation of these nanoparticles besides their expected nanotoxicity to soil microbes will be also reported in the current study. Nanotoxicity to soil microbes and plants was investigated by taking account of morpho-physiological, molecular, and biochemical concerns. This study highlights the regulations of nanotoxicity with a focus on risk and challenges at the ecological level and their risks to human health, along with the scientific and organizational levels. This study opens many windows in such studies nexus which are needed in the near future.
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Affiliation(s)
- József Prokisch
- Faculty of Agricultural and Food Sciences and Environmental Management, Institute of Animal Science, Biotechnology and Nature Conservation, University of Debrecen, 138 Böszörményi Street, 4032 Debrecen, Hungary; (D.H.H.N.); (A.M.); (A.F.); (M.R.)
| | - Duyen H. H. Nguyen
- Faculty of Agricultural and Food Sciences and Environmental Management, Institute of Animal Science, Biotechnology and Nature Conservation, University of Debrecen, 138 Böszörményi Street, 4032 Debrecen, Hungary; (D.H.H.N.); (A.M.); (A.F.); (M.R.)
- Tay Nguyen Institute for Scientific Research, Vietnam Academy of Science and Technology (VAST), Dalat 66000, Vietnam
- Doctoral School of Nutrition and Food Science, University of Debrecen, 138 Böszörményi Street, 4032 Debrecen, Hungary
| | - Arjun Muthu
- Faculty of Agricultural and Food Sciences and Environmental Management, Institute of Animal Science, Biotechnology and Nature Conservation, University of Debrecen, 138 Böszörményi Street, 4032 Debrecen, Hungary; (D.H.H.N.); (A.M.); (A.F.); (M.R.)
- Doctoral School of Nutrition and Food Science, University of Debrecen, 138 Böszörményi Street, 4032 Debrecen, Hungary
| | - Aya Ferroudj
- Faculty of Agricultural and Food Sciences and Environmental Management, Institute of Animal Science, Biotechnology and Nature Conservation, University of Debrecen, 138 Böszörményi Street, 4032 Debrecen, Hungary; (D.H.H.N.); (A.M.); (A.F.); (M.R.)
- Doctoral School of Animal Husbandry, University of Debrecen, 138 Böszörményi Street, 4032 Debrecen, Hungary
| | - Abhishek Singh
- Faculty of Biology, Yerevan State University, Yerevan 0025, Armenia; (A.S.); (K.G.)
| | - Shreni Agrawal
- Department of Biotechnology, Parul Institute of Applied Science, Parul University, Vadodara 391760, Gujarat, India;
| | - Vishnu D. Rajput
- Academy of Biology and Biotechnology, Southern Federal University, Rostov on Don 344006, Russia;
| | - Karen Ghazaryan
- Faculty of Biology, Yerevan State University, Yerevan 0025, Armenia; (A.S.); (K.G.)
| | - Hassan El-Ramady
- Faculty of Agricultural and Food Sciences and Environmental Management, Institute of Animal Science, Biotechnology and Nature Conservation, University of Debrecen, 138 Böszörményi Street, 4032 Debrecen, Hungary; (D.H.H.N.); (A.M.); (A.F.); (M.R.)
- Soil and Water Department, Faculty of Agriculture, Kafrelsheikh University, Kafr El-Sheikh 33516, Egypt
| | - Mahendra Rai
- Faculty of Agricultural and Food Sciences and Environmental Management, Institute of Animal Science, Biotechnology and Nature Conservation, University of Debrecen, 138 Böszörményi Street, 4032 Debrecen, Hungary; (D.H.H.N.); (A.M.); (A.F.); (M.R.)
- Department of Biotechnology, Sant Gadge Baba Amravati University, Amravati 444602, Maharashtra, India
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Agosto-Ramos A, Muhich AJ, Kliebenstein DJ. Convergently evolved metabolites are new to me but not to my attackers. THE NEW PHYTOLOGIST 2024; 242:2388-2390. [PMID: 38488261 DOI: 10.1111/nph.19672] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2024]
Abstract
This article is a Commentary on Younkin et al. (2024), 242: 2719–2733.
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Affiliation(s)
- Amanda Agosto-Ramos
- Department of Plant Sciences, University of California, Davis, One Shields Ave, Davis, CA, 95616, USA
- Plant Biology Graduate Group, University of California, Davis, One Shields Ave, Davis, CA, 95616, USA
| | - Anna Jo Muhich
- Department of Plant Sciences, University of California, Davis, One Shields Ave, Davis, CA, 95616, USA
- Plant Biology Graduate Group, University of California, Davis, One Shields Ave, Davis, CA, 95616, USA
| | - Daniel J Kliebenstein
- Department of Plant Sciences, University of California, Davis, One Shields Ave, Davis, CA, 95616, USA
- Plant Biology Graduate Group, University of California, Davis, One Shields Ave, Davis, CA, 95616, USA
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Bai X, Zhang R, Zeng Q, Yang W, Fang F, Sun Q, Yan C, Li F, Liu X, Li B. The RNA-Binding Protein BoRHON1 Positively Regulates the Accumulation of Aliphatic Glucosinolates in Cabbage. Int J Mol Sci 2024; 25:5314. [PMID: 38791354 PMCID: PMC11120748 DOI: 10.3390/ijms25105314] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2024] [Revised: 04/29/2024] [Accepted: 05/11/2024] [Indexed: 05/26/2024] Open
Abstract
Aliphatic glucosinolates are an abundant group of plant secondary metabolites in Brassica vegetables, with some of their degradation products demonstrating significant anti-cancer effects. The transcription factors MYB28 and MYB29 play key roles in the transcriptional regulation of aliphatic glucosinolates biosynthesis, but little is known about whether BoMYB28 and BoMYB29 are also modulated by upstream regulators or how, nor their gene regulatory networks. In this study, we first explored the hierarchical transcriptional regulatory networks of MYB28 and MYB29 in a model plant, then systemically screened the regulators of the three BoMYB28 homologs in cabbage using a yeast one-hybrid. Furthermore, we selected a novel RNA binding protein, BoRHON1, to functionally validate its roles in modulating aliphatic glucosinolates biosynthesis. Importantly, BoRHON1 induced the accumulation of all detectable aliphatic and indolic glucosinolates, and the net photosynthetic rates of BoRHON1 overexpression lines were significantly increased. Interestingly, the growth and biomass of these overexpression lines of BoRHON1 remained the same as those of the control plants. BoRHON1 was shown to be a novel, potent, positive regulator of glucosinolates biosynthesis, as well as a novel regulator of normal plant growth and development, while significantly increasing plants' defense costs.
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Affiliation(s)
| | | | | | | | | | | | | | | | | | - Baohua Li
- State Key Laboratory of Crop Stress Biology for Arid Area, College of Horticulture, Northwest A&F University, Yangling, Xianyang 712100, China; (X.B.); (R.Z.); (Q.Z.); (W.Y.); (F.F.); (Q.S.); (C.Y.); (F.L.); (X.L.)
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Jian Y, Gong D, Wang Z, Liu L, He J, Han X, Tsuda K. How plants manage pathogen infection. EMBO Rep 2024; 25:31-44. [PMID: 38177909 PMCID: PMC10897293 DOI: 10.1038/s44319-023-00023-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Revised: 10/27/2023] [Accepted: 11/27/2023] [Indexed: 01/06/2024] Open
Abstract
To combat microbial pathogens, plants have evolved specific immune responses that can be divided into three essential steps: microbial recognition by immune receptors, signal transduction within plant cells, and immune execution directly suppressing pathogens. During the past three decades, many plant immune receptors and signaling components and their mode of action have been revealed, markedly advancing our understanding of the first two steps. Activation of immune signaling results in physical and chemical actions that actually stop pathogen infection. Nevertheless, this third step of plant immunity is under explored. In addition to immune execution by plants, recent evidence suggests that the plant microbiota, which is considered an additional layer of the plant immune system, also plays a critical role in direct pathogen suppression. In this review, we summarize the current understanding of how plant immunity as well as microbiota control pathogen growth and behavior and highlight outstanding questions that need to be answered.
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Affiliation(s)
- Yinan Jian
- National Key Laboratory of Agricultural Microbiology, Hubei Hongshan Laboratory, Hubei Key Laboratory of Plant Pathology, College of Plant Science and Technology, Huazhong Agricultural University, 430070, Wuhan, China
- Shenzhen Institute of Nutrition and Health, Huazhong Agricultural University, 430070, Wuhan, China
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, 518120, Shenzhen, China
| | - Dianming Gong
- National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, 430070, Wuhan, China
| | - Zhe Wang
- National Key Laboratory of Agricultural Microbiology, Hubei Hongshan Laboratory, Hubei Key Laboratory of Plant Pathology, College of Plant Science and Technology, Huazhong Agricultural University, 430070, Wuhan, China
- Shenzhen Institute of Nutrition and Health, Huazhong Agricultural University, 430070, Wuhan, China
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, 518120, Shenzhen, China
| | - Lijun Liu
- National Key Laboratory of Agricultural Microbiology, Hubei Hongshan Laboratory, Hubei Key Laboratory of Plant Pathology, College of Plant Science and Technology, Huazhong Agricultural University, 430070, Wuhan, China
- Shenzhen Institute of Nutrition and Health, Huazhong Agricultural University, 430070, Wuhan, China
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, 518120, Shenzhen, China
| | - Jingjing He
- National Key Laboratory of Agricultural Microbiology, Hubei Hongshan Laboratory, Hubei Key Laboratory of Plant Pathology, College of Plant Science and Technology, Huazhong Agricultural University, 430070, Wuhan, China
- Shenzhen Institute of Nutrition and Health, Huazhong Agricultural University, 430070, Wuhan, China
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, 518120, Shenzhen, China
| | - Xiaowei Han
- National Key Laboratory of Agricultural Microbiology, Hubei Hongshan Laboratory, Hubei Key Laboratory of Plant Pathology, College of Plant Science and Technology, Huazhong Agricultural University, 430070, Wuhan, China
- Shenzhen Institute of Nutrition and Health, Huazhong Agricultural University, 430070, Wuhan, China
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, 518120, Shenzhen, China
| | - Kenichi Tsuda
- National Key Laboratory of Agricultural Microbiology, Hubei Hongshan Laboratory, Hubei Key Laboratory of Plant Pathology, College of Plant Science and Technology, Huazhong Agricultural University, 430070, Wuhan, China.
- Shenzhen Institute of Nutrition and Health, Huazhong Agricultural University, 430070, Wuhan, China.
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, 518120, Shenzhen, China.
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