1
|
Huang Z, Jiang C, Xu S, Zheng X, Lv P, Wang C, Wang D, Zhuang X. Spatiotemporal changes of bacterial communities during a cyanobacterial bloom in a subtropical water source reservoir ecosystem in China. Sci Rep 2022; 12:14573. [PMID: 36028544 PMCID: PMC9418230 DOI: 10.1038/s41598-022-17788-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Accepted: 07/31/2022] [Indexed: 11/09/2022] Open
Abstract
Cyanobacterial blooms, which not only threaten the health and stability of aquatic ecosystems but also influence the microbial community within, emerges as one of the most concerning problems in China. However, how cyanobacterial blooms affect the spatiotemporal variation of aquatic microbial communities remains relatively unclear. In this study, we used high-throughput sequencing to investigate how the cyanobacterial and bacterial community spatiotemporally vary along with main cyanobacterial bloom phases in upstream rivers of a eutrophicated water source reservoir. Both cyanobacterial and bacterial diversities in each river were significantly lower (P < 0.05) during the bloom outbreak phase, showing the apparent influence of cyanobacterial bloom. Dominant cyanobacterial taxa included Cyanobacteriales and Synechococcales, and dominant bacterial taxa comprised Acinetobacter, CL500-29, hgcI clade, Limnohabitans, Flavobacterium, Rhodoluna, Porphyrobacter, Rhodobacter, Pseudomonas, and Rhizobiales, whose changes of relative abundance along with the bloom indicated distinct community composition. Non-metric multidimensional scaling analysis proved that community composition had significant difference amongst bloom phases. Linear discriminant analysis (LDA) with LDA effect size analysis (LEfSe) identified unique dominant cyanobacterial and bacterial OTUs at different phases in each river, indicating spatiotemporal variations of communities. Canonical correlation analysis or redundancy analysis revealed that at different bloom phases communities of each river had distinct correlation patterns with the environmental parameters (temperature, ammonium, nitrate, and total phosphorus etc.), implying the spatial variations of microbial communities. Overall, these results expand current understanding on the spatiotemporal variations of microbial communities due to cyanobacterial blooms. Microbial interactions during the bloom may shed light on controlling cyanobacterial blooms in the similar aquatic ecosystems.
Collapse
Affiliation(s)
- Zhenhua Huang
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China.,University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Cancan Jiang
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
| | - Shengjun Xu
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China. .,Yangtze River Delta Research Center for Eco-Environmental Sciences, Yiwu, 322000, China.
| | - Xiaoxu Zheng
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
| | - Ping Lv
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
| | - Cong Wang
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
| | - Dongsheng Wang
- Yangtze River Delta Research Center for Eco-Environmental Sciences, Yiwu, 322000, China
| | - Xuliang Zhuang
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China. .,Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing, 100101, China.
| |
Collapse
|
2
|
Řezanka T, Lukavský J, Rozmoš M, Nedbalová L, Jansa J. Separation of triacylglycerols containing positional isomers of hexadecenoic acids by enantiomeric liquid chromatography-mass spectrometry. J Chromatogr B Analyt Technol Biomed Life Sci 2022; 1208:123401. [PMID: 35921696 DOI: 10.1016/j.jchromb.2022.123401] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Revised: 07/26/2022] [Accepted: 07/26/2022] [Indexed: 11/19/2022]
Abstract
Triacylglycerols (TAGs) containing positional isomers of hypogeic (Hy), palmitoleic (Po), and palmitvaccenic (Pv) acids from three microorganisms (top-fermenting brewer's yeast Saccharomyces cerevisiae, green alga Coccomyxa elongata, and arbuscular mycorrhizal (AM) fungus Rhizophagus irregularis) were analyzed. Dozens of regioisomers and enantiomers of TAGs containing one, two or three hexadecenoic acids have been identified by means of reversed phase chromatography/mass spectrometry (RP-HPLC/MS). The regioisomers of TAGs containing two palmitic acids and any hexadecenoic acid were separated. Analysis of regioisomers of TAGs having one Pv residue showed that asymmetric molecular species such as PvPP or PPPv were dominant in Rhizophagus. TAGs were also analyzed on a chiral phase column and nine molecular species of TAGs containing two palmitic and any of three hexadecenoic acids were separated and identified. In the case of TAGs containing one palmitic and two hexadecenoic acids, the separation was successful only if the hexadecenoic acids were identical. Separation of TAGs containing three hexadecenoic acids was successful only if all three hexadecenoic acids were identical. Regardless of the type of TAG, it was found that TAGs in the AM fungus and containing palmitvaccenic acid bound at the sn-1 position of the glycerol backbone were dominant, suggesting similarity in the biosynthesis of the different TAGs. The covalent adduct chemical ionization method was used for identification of TAGs as adduct with (1-methyleneimino)-1-ethenyl ion, which reacted with double bond of the unsaturated fatty acid. Tandem MS thus makes it possible to identify TAGs containing various hexadecenoic acids.
Collapse
Affiliation(s)
- Tomáš Řezanka
- Institute of Microbiology, Czech Academy of Sciences, Vídeňská 1083, 142 20 Prague 4, Czech Republic.
| | - Jaromír Lukavský
- Institute of Botany, Czech Academy of Sciences, Dukelská 135, 379 82 Třeboň, Czech Republic
| | - Martin Rozmoš
- Institute of Microbiology, Czech Academy of Sciences, Vídeňská 1083, 142 20 Prague 4, Czech Republic
| | - Linda Nedbalová
- Department of Ecology, Faculty of Science, Charles University, Viničná 7, 128 44 Prague 2, Czech Republic
| | - Jan Jansa
- Institute of Microbiology, Czech Academy of Sciences, Vídeňská 1083, 142 20 Prague 4, Czech Republic
| |
Collapse
|
3
|
Regio- and Stereospecific Analysis of Triacylglycerols—A Brief Overview of the Challenges and the Achievements. Symmetry (Basel) 2022. [DOI: 10.3390/sym14020247] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
The efforts to reveal, in detail, the molecular and intramolecular structures of one of the main lipid classes, namely, triacyl-sn-glycerols, which are now known to affect their specific and important role in all living organisms, are briefly overviewed. Some milestones of significance in the gradual but continuous development and improvement of the analytical methodology to identify the triacylglycerol regio- and stereoisomers in complex lipid samples are traced throughout the years: the use of chromatography based on different separation principles; the improvements in the chromatographic technique; the development and use of different detection techniques; the attempts to simplify and automatize the analysis without losing the accuracy of identification. The spectacular recent achievements of two- and multidimensional methods used as tools in lipidomics are presented.
Collapse
|
4
|
Vítová M, Stránská M, Palyzová A, Řezanka T. Detailed structural characterization of cardiolipins from various biological sources using a complex analytical strategy comprising fractionation, hydrolysis and chiral chromatography. J Chromatogr A 2021; 1648:462185. [PMID: 33984647 DOI: 10.1016/j.chroma.2021.462185] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Revised: 04/16/2021] [Accepted: 04/18/2021] [Indexed: 12/14/2022]
Abstract
Cardiolipins (1,3-bis(sn-3'-phosphatidyl)-sn-glycerol) (CLs) are widespread in many organisms, from bacteria to higher green plants and mammals. CLs were observed in Gram-positive bacterium of the genus Kocuria, brewer's yeast Saccharomyces, the green alga Chlamydomonas, spinach and beef heart. A mixture of molecular species of CLs was obtained from total lipids by hydrophilic interaction liquid chromatography (HILIC), and these were further separated and identified by reversed phase LC/MS with negative tandem electrospray ionization. The majority of CLs molecular species from each organism were cleaved using phospholipase C from Bacillus cereus. This phospholipase cleaves CLs into 1,2-diglycerols and phosphatidylglycerol 3-phosphates, which were then separated. After CLs cleavage, diacylglycerols such as sn-1,2-diacyl-3-acetyl-glycerols (i.e., triacylglycerols) were separated and identified by chiral chromatography/MS-positive tandem ESI. Significant differences in the composition of the molecular species between the 3-(3-sn-phosphatidyl) and 1-(3-sn-phosphatidyl) moieties of CLs were found in all organisms tested. Molecular species of CLs that contained four different fatty acids were identified in all five samples, and CLs containing very long chain fatty acids were identified in yeast. In addition, CLs containing both enantiomers (at the sn-2 carbon) were present in the bacterium tested. These findings were further supported by data already published in GenBank where, in the same family - Micrococcaceae - both enzymes responsible for chirality in the sn-2 position, glycerol-3-phosphate and glycerol-1-phosphate dehydrogenases, were present.
Collapse
Affiliation(s)
- Milada Vítová
- Institute of Microbiology of the Czech Academy of Sciences, Centre Algatech, Laboratory of Cell Cycles of Algae, Novohradská 237, 379 81 Třeboň, Czech Republic
| | - Milena Stránská
- University of Chemistry and Technology Prague, Faculty of Food and Biochemical Technology, Department of Food Analysis and Nutrition, Technická 3, 166 28 Prague, Czech Republic
| | - Andrea Palyzová
- University of Chemistry and Technology Prague, Faculty of Food and Biochemical Technology, Department of Food Analysis and Nutrition, Technická 3, 166 28 Prague, Czech Republic
| | - Tomáš Řezanka
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20 Prague, Czech Republic.
| |
Collapse
|
5
|
Palyzová A, Cajthaml T, Řezanka T. Separation of regioisomers and enantiomers of triacylglycerols containing branched fatty acids (iso and/or anteiso). Electrophoresis 2021; 42:1832-1843. [DOI: 10.1002/elps.202000320] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2020] [Revised: 12/04/2020] [Accepted: 12/05/2020] [Indexed: 01/12/2023]
Affiliation(s)
- Andrea Palyzová
- Institute of Microbiology The Czech Academy of Sciences Prague 4 Czech Republic
| | - Tomáš Cajthaml
- Institute of Microbiology The Czech Academy of Sciences Prague 4 Czech Republic
- Institute for Environmental Studies Faculty of Science Charles University Prague 2 Czech Republic
| | - Tomáš Řezanka
- Institute of Microbiology The Czech Academy of Sciences Prague 4 Czech Republic
| |
Collapse
|
6
|
Separation of triacylglycerols containing allenic and acetylenic fatty acids by enantiomeric liquid chromatography-mass spectrometry. J Chromatogr A 2020; 1623:461161. [DOI: 10.1016/j.chroma.2020.461161] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2020] [Revised: 04/20/2020] [Accepted: 04/22/2020] [Indexed: 01/25/2023]
|
7
|
Enantiomeric separation of triacylglycerols containing fatty acids with a ring (cyclofatty acids). J Chromatogr A 2020; 1622:461103. [DOI: 10.1016/j.chroma.2020.461103] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2019] [Revised: 02/05/2020] [Accepted: 04/02/2020] [Indexed: 01/09/2023]
|
8
|
Chowdhury R, Keen PL, Tao W. Fatty acid profile and energy efficiency of biodiesel production from an alkaliphilic algae grown in the photobioreactor. ACTA ACUST UNITED AC 2019. [DOI: 10.1016/j.biteb.2019.03.010] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
|
9
|
Kieliszek M, Kot AM, Bzducha-Wróbel A, BŁażejak S, Gientka I, Kurcz A. Biotechnological use of Candida yeasts in the food industry: A review. FUNGAL BIOL REV 2017. [DOI: 10.1016/j.fbr.2017.06.001] [Citation(s) in RCA: 55] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
|
10
|
Řezanka T, Nedbalová L, Sigler K. Enantiomeric separation of triacylglycerols containing polyunsaturated fatty acids with 18 carbon atoms. J Chromatogr A 2016; 1467:261-269. [DOI: 10.1016/j.chroma.2016.07.006] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2016] [Revised: 06/28/2016] [Accepted: 07/05/2016] [Indexed: 10/21/2022]
|
11
|
Regioisomeric and enantiomeric analysis of triacylglycerols. Anal Biochem 2016; 524:3-12. [PMID: 27318242 DOI: 10.1016/j.ab.2016.05.028] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2016] [Revised: 05/24/2016] [Accepted: 05/31/2016] [Indexed: 11/20/2022]
Abstract
A survey of useful methods for separation and identification of regioisomers and enantiomers of triacylglycerols. Gas chromatography, gas chromatography-mass spectrometry, 13C NMR determination of regioisomers by enzymatic methods, and supercritical fluid chromatography are briefly surveyed, whereas a detailed description is given of the analysis of triacylglycerols by liquid chromatography, especially with silver ion (Ag+; argentation), and nonaqueous reversed phase liquid chromatography. Special attention is paid to chiral chromatography. Details of mass spectrometry of triacylglycerols are also described, especially the identification of important triacylglycerol ions such as [M + H-RCOOH]+ in atmospheric pressure chemical ionization mass spectra.
Collapse
|
12
|
Stranska-Zachariasova M, Kastanek P, Dzuman Z, Rubert J, Godula M, Hajslova J. Bioprospecting of microalgae: Proper extraction followed by high performance liquid chromatographic-high resolution mass spectrometric fingerprinting as key tools for successful metabolom characterization. J Chromatogr B Analyt Technol Biomed Life Sci 2016; 1015-1016:22-33. [PMID: 26894852 DOI: 10.1016/j.jchromb.2016.01.050] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2015] [Revised: 01/25/2016] [Accepted: 01/30/2016] [Indexed: 11/19/2022]
Abstract
Currently, the interest in microalgae as a source of biologically active components exploitable as supplementary ingredients to food/feed or in cosmetics continues to increase. Existing research mainly aims to focus on revealing and recovering the rare, cost competitive components of the algae metabolom. Because these components could be of very different physicochemical character, a universal approach for their isolation and characterization should be developed. This study demonstrates the systematic development of the extraction strategy that represents one of the key challenges in effective algae bioprospecting, which predefines their further industrial application. By using of Trachydiscus minutus as a model microalgae biomass, following procedures were tested and critically evaluated in order to develop the generic procedure for microalgae bioprospecting: (i) various ways of mechanical disintegration of algae cells enabling maximum extraction efficiency, (ii) the use of a wide range of extraction solvents/solvent mixtures suitable for optimal extraction yields of polar, medium-polar, and non-polar compounds, (iii) the use of consecutive extractions as a fractionation approach. Within the study, targeted screening of selected compounds representing broad range of polarities was realized by ultra-high performance liquid chromatography coupled with high resolution tandem mass spectrometric detection (UHPLC-HRMS/MS), to assess the effectiveness of undertaken isolation steps. As a result, simple and high-throughput extraction-fractionation strategy based on consecutive extraction with water-aqueous methanol-hexane/isopropanol was developed. Moreover, to demonstrate the potential of the UHPLC-HRMS/MS for the retrospective non-target screening and compounds identification, the collected mass spectra have been evaluated to characterize the pattern of extracted metabolites. Attention was focused on medium-/non-polar extracts and characterization of lipid species present in the T. minutus algae. Such detailed information on the composition of native (non-hydrolyzed) lipids of this microalga has not been published yet.
Collapse
Affiliation(s)
- Milena Stranska-Zachariasova
- University of Chemistry and Technology Prague, Department of Food Analysis and Nutrition, Technicka 3, Prague 166 28, Czech Republic.
| | - Petr Kastanek
- University of Chemistry and Technology Prague, Department of Biochemistry and Microbiology, Technicka 3, Prague 166 28, Czech Republic
| | - Zbynek Dzuman
- University of Chemistry and Technology Prague, Department of Food Analysis and Nutrition, Technicka 3, Prague 166 28, Czech Republic
| | - Josep Rubert
- University of Chemistry and Technology Prague, Department of Food Analysis and Nutrition, Technicka 3, Prague 166 28, Czech Republic
| | - Michal Godula
- University of Chemistry and Technology Prague, Department of Food Analysis and Nutrition, Technicka 3, Prague 166 28, Czech Republic
| | - Jana Hajslova
- University of Chemistry and Technology Prague, Department of Food Analysis and Nutrition, Technicka 3, Prague 166 28, Czech Republic
| |
Collapse
|
13
|
Separation and Identification of Odd Chain Triacylglycerols of the Protozoan Khawkinea quartana and the Mold Mortierella alpina Using LC–MS. Lipids 2015; 50:811-20. [DOI: 10.1007/s11745-015-4042-8] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2015] [Accepted: 06/17/2015] [Indexed: 10/23/2022]
|