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Kumsab J, Yingchutrakul Y, Simanon N, Jankam C, Sonthirod C, Tangphatsornruang S, Butkinaree C. Comparative Proteomic Analysis of Ridge Gourd Seed ( Luffa acutangula (L.) Roxb.) during Artificial Aging. ACS OMEGA 2024; 9:24739-24750. [PMID: 38882140 PMCID: PMC11171090 DOI: 10.1021/acsomega.4c01270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/08/2024] [Revised: 05/15/2024] [Accepted: 05/23/2024] [Indexed: 06/18/2024]
Abstract
Seed aging is a complicated process influenced by environmental conditions, impacting biochemical processes in seeds and causing deterioration that results in reduced viability and vigor. In this study, we investigated the seed aging process of ridge gourd, which is one of the most exported commercial seeds in Thailand using sequential window acquisition of all theoretical fragment ion spectra mass spectrometry. A total of 855 proteins were identified among the two groups (0 d/15 d and 0 d/30 d). The Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses of differentially expressed proteins revealed that in ridge gourd seeds, the aging process altered the abundance of proteins related to the oxidative stress response, nutrient reservoir, and metabolism pathway. The most identified DEPs were mitochondrial proteins, ubiquitin-proteasome system proteins, ribosomal proteins, carbohydrate metabolism-related proteins, and stress response-related proteins. This study also presented the involvement of aconitase and glutathione pathway-associated enzymes in seed aging, with aconitase and total glutathione being determined as possible suggestive biomarkers for aged ridge gourd seeds. This acquired knowledge has the potential to considerably improve growing methods and seed preservation techniques, enhancing seed storage and maintenance.
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Affiliation(s)
- Jakkaphan Kumsab
- National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Pathum Thani 12120, Thailand
| | - Yodying Yingchutrakul
- National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Pathum Thani 12120, Thailand
| | - Nattapon Simanon
- National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Pathum Thani 12120, Thailand
| | - Chonchawan Jankam
- National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Pathum Thani 12120, Thailand
| | - Chutima Sonthirod
- National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Pathum Thani 12120, Thailand
| | - Sithichoke Tangphatsornruang
- National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Pathum Thani 12120, Thailand
| | - Chutikarn Butkinaree
- National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Pathum Thani 12120, Thailand
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2
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Ye T, Ma T, Chen Y, Liu C, Jiao Z, Wang X, Xue H. The role of redox-active small molecules and oxidative protein post-translational modifications in seed aging. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 213:108810. [PMID: 38857563 DOI: 10.1016/j.plaphy.2024.108810] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Revised: 05/25/2024] [Accepted: 06/07/2024] [Indexed: 06/12/2024]
Abstract
Seed vigor is a crucial indicator of seed quality. Variations in seed vigor are closely associated with seed properties and storage conditions. The vigor of mature seeds progressively declines during storage, which is called seed deterioration or aging. Seed aging induces a cascade of cellular damage, including impaired subcellular structures and macromolecules, such as lipids, proteins, and DNA. Reactive oxygen species (ROS) act as signaling molecules during seed aging causing oxidative damage and triggering programmed cell death (PCD). Mitochondria are the main site of ROS production and change morphology and function before other organelles during aging. The roles of other small redox-active molecules in regulating cell and seed vigor, such as nitric oxide (NO) and hydrogen sulfide (H2S), were identified later. ROS, NO, and H2S typically regulate protein function through post-translational modifications (PTMs), including carbonylation, S-glutathionylation, S-nitrosylation, and S-sulfhydration. These signaling molecules as well as the PTMs they induce interact to regulate cell fate and seed vigor. This review was conducted to describe the physiological changes and underlying molecular mechanisms that in seed aging and provides a comprehensive view of how ROS, NO, and H2S affect cell death and seed vigor.
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Affiliation(s)
- Tiantian Ye
- State Key Laboratory of Tree Genetics and Breeding, National Engineering Research Center of Tree Breeding and Ecological Remediation, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China.
| | - Tianxiao Ma
- State Key Laboratory of Tree Genetics and Breeding, National Engineering Research Center of Tree Breeding and Ecological Remediation, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China.
| | - Yang Chen
- State Key Laboratory of Tree Genetics and Breeding, National Engineering Research Center of Tree Breeding and Ecological Remediation, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China.
| | - Chang Liu
- State Key Laboratory of Tree Genetics and Breeding, National Engineering Research Center of Tree Breeding and Ecological Remediation, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China.
| | - Zhiyuan Jiao
- State Key Laboratory of Tree Genetics and Breeding, National Engineering Research Center of Tree Breeding and Ecological Remediation, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China.
| | - Xiaofeng Wang
- State Key Laboratory of Tree Genetics and Breeding, National Engineering Research Center of Tree Breeding and Ecological Remediation, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China.
| | - Hua Xue
- State Key Laboratory of Tree Genetics and Breeding, National Engineering Research Center of Tree Breeding and Ecological Remediation, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China.
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Choudhary P, Pramitha L, Aggarwal PR, Rana S, Vetriventhan M, Muthamilarasan M. Biotechnological interventions for improving the seed longevity in cereal crops: progress and prospects. Crit Rev Biotechnol 2023; 43:309-325. [PMID: 35443842 DOI: 10.1080/07388551.2022.2027863] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Seed longevity is a measure of the viability of seeds during long-term storage and is crucial for germplasm conservation and crop improvement programs. Also, longevity is an important trait for ensuring food and nutritional security. Thus, a better understanding of various factors regulating seed longevity is requisite to improve this trait and to minimize the genetic drift during the regeneration of germplasm. In particular, seed deterioration of cereal crops during storage adversely affects agricultural productivity and food security. The irreversible process of seed deterioration involves a complex interplay between different genes and regulatory pathways leading to: loss of DNA integrity, membrane damage, inactivation of storage enzymes and mitochondrial dysfunction. Identifying the genetic determinants of seed longevity and manipulating them using biotechnological tools hold the key to ensuring prolonged seed storage. Genetics and genomics approaches had identified several genomic regions regulating the longevity trait in major cereals such as: rice, wheat, maize and barley. However, very few studies are available in other Poaceae members, including millets. Deploying omics tools, including genomics, proteomics, metabolomics, and phenomics, and integrating the datasets will pinpoint the precise molecular determinants affecting the survivability of seeds. Given this, the present review enumerates the genetic factors regulating longevity and demonstrates the importance of integrated omics strategies to dissect the molecular machinery underlying seed deterioration. Further, the review provides a roadmap for deploying biotechnological approaches to manipulate the genes and genomic regions to develop improved cultivars with prolonged storage potential.
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Affiliation(s)
- Pooja Choudhary
- Department of Plant Sciences, School of Life Sciences, University of Hyderabad, Hyderabad, India
| | - Lydia Pramitha
- School of Agriculture and Biosciences, Karunya Institute of Technology and Sciences, Coimbatore, India
| | - Pooja Rani Aggarwal
- Department of Plant Sciences, School of Life Sciences, University of Hyderabad, Hyderabad, India
| | - Sumi Rana
- Department of Plant Sciences, School of Life Sciences, University of Hyderabad, Hyderabad, India
| | - Mani Vetriventhan
- International Crops Research Institute for the Semi-Arid Tropics, Patancheru, India
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4
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Aniskina TS, Baranova EN, Lebedev SV, Reger NS, Besaliev IN, Panfilov AA, Kryuchkova VA, Gulevich AA. Unexpected Effects of Sulfate and Sodium Chloride Application on Yield Qualitative Characteristics and Symmetry Indicators of Hard and Soft Wheat Kernels. PLANTS (BASEL, SWITZERLAND) 2023; 12:980. [PMID: 36903841 PMCID: PMC10004740 DOI: 10.3390/plants12050980] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/31/2022] [Revised: 02/16/2023] [Accepted: 02/17/2023] [Indexed: 06/18/2023]
Abstract
The heterogeneity of grain quality can lead to limited predictability of qualitative and quantitative characteristics of the wheat yield, especially with an increase in the importance of drought and salinity caused by climate change. This study was undertaken with the aim of creating basic tools for phenotyping and assessing the sensitivity of genotypes to salt effects at the level of some wheat kernel attributes. The study considers 36 variants of the experiment, including four wheat cultivars-Zolotaya, Ulyanovskaya 105, Orenburgskaya 10, Orenburgskaya 23; three treatment variants-control (without salt) and two salts exposure (NaCl at a concentration of 1.1 g L-1 and Na2SO4 at a concentration of 0.4 g L-1); as well as three options for the arrangement of kernels in a simple spikelet-left, middle, and right. It has been established that the salt exposure had a positive effect on the percentage of kernel fulfilling in the cultivars Zolotaya, Ulyanovskaya 105, and Orenburgskaya 23 compared to control. The kernels of the Orenburgskaya 10 variety matured better in the experiment with Na2SO4 exposure, while the control variant and NaCl gave the same effect. When exposed to NaCl, significantly greater values of weight, transverse section area, and transverse section perimeter of the kernel were noted in the cv Zolotaya and Ulyanovskaya 105. Cv Orenburgskaya 10 responded positively to the use of Na2SO4. This salt caused an increase in the area, length, and width of the kernel. The fluctuating asymmetry of the left, middle, and right kernels in the spikelet was calculated. In the cv Orenburgskaya 23 the salts affected only the kernel perimeter among parameters examined. The indicators of the general (fluctuating) asymmetry were lower in the experiments with the use of salts, i.e., kernels were more symmetrical than in the control variant, both for the cultivar as a whole and when compared taking into account the kernel location in spikelet. However, this result was unexpected, since salt stress inhibited a number of morphological parameters: the number and average length of embryonic, adventitious, and nodal roots, flag leaf area, plant height, dry biomass accumulation, and plant productivity indicators. The study showed that low concentrations of salts can positively affect the fulfilling of kernels (the absence of a cavity inside the kernel) and the symmetry of the left and right sides of the kernel.
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Affiliation(s)
- Tatiana S. Aniskina
- N.V. Tsitsin Main Botanical Garden of Russian Academy of Sciences, Botanicheskaya 4, 127276 Moscow, Russia
| | - Ekaterina N. Baranova
- N.V. Tsitsin Main Botanical Garden of Russian Academy of Sciences, Botanicheskaya 4, 127276 Moscow, Russia
- All-Russia Research Institute of Agricultural Biotechnology, Timiryazevskaya 42, 127550 Moscow, Russia
| | - Svyatoslav V. Lebedev
- Federal Scientific Center of Biological Systems and Agrotechnology of the Russian Academy of Sciences, 9 Yanvarya 29, 460000 Orenburg, Russia
| | - Nelli S. Reger
- Federal Scientific Center of Biological Systems and Agrotechnology of the Russian Academy of Sciences, 9 Yanvarya 29, 460000 Orenburg, Russia
| | - Ishen N. Besaliev
- Federal Scientific Center of Biological Systems and Agrotechnology of the Russian Academy of Sciences, 9 Yanvarya 29, 460000 Orenburg, Russia
| | - Alexander A. Panfilov
- Federal Scientific Center of Biological Systems and Agrotechnology of the Russian Academy of Sciences, 9 Yanvarya 29, 460000 Orenburg, Russia
| | - Viktoriya A. Kryuchkova
- N.V. Tsitsin Main Botanical Garden of Russian Academy of Sciences, Botanicheskaya 4, 127276 Moscow, Russia
| | - Alexander A. Gulevich
- All-Russia Research Institute of Agricultural Biotechnology, Timiryazevskaya 42, 127550 Moscow, Russia
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Mescia TB, Louro RP, Barbedo CJ, Carbonero ER, Figueiredo-Ribeiro RDCL, Braga MR. Changes in cell wall composition and ultrastructure related to desiccation during the seed maturation of Paubrasilia echinata (brazilwood). PROTOPLASMA 2022; 259:1255-1269. [PMID: 35039949 DOI: 10.1007/s00709-021-01731-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2021] [Accepted: 12/09/2021] [Indexed: 06/14/2023]
Abstract
Paubrasilia echinata (brazilwood) is an endangered native tree from the Brazilian Atlantic Forest whose seeds tolerate maturation drying, but, unlike classic orthodox seeds, they quickly lose viability after shedding. This work analyzed the biochemical and ultrastructural changes during the maturation of brazilwood seeds, with particular attention to the cell walls and organization of the cellular components. The physiological seed maturity was accompanied by increased starch content and decreased soluble sugars. Arabinose increased considerably and was the predominant cell-wall sugar during maturation, suggesting a rise in arabinans that contribute to greater cell wall flexibility. This increase was consistent with the cell wall infolding observed in the hypocotyl axis and cotyledons during the maturation of brazilwood seeds. Ultrastructural analyses showed changes in the number and distribution of protein bodies and amyloplasts and the reorganization of lipid droplets into large drops or masses during seed desiccation. Our findings demonstrate that brazilwood seeds behave like other orthodox seeds during maturation, performing the cell wall and metabolic changes before the major decline in the seed water content. However, the high vacuolization and reorganization of lipid bodies observed at 65 DAA suggest that cell deterioration occurs to some extent at the end of the maturation period and could be responsible for reducing the longevity of the brazilwood dried seeds.
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Affiliation(s)
- Tatiana Botelho Mescia
- Research Center in Physiology and Biochemistry, Institute of Botany, CP 68041, São Paulo, SP, 04045-972, Brazil
| | - Ricardo Pereira Louro
- Department of Botany, Federal University of Rio de Janeiro, Institute of Biology, Plant Ultrastructure Laboratory, Rio de Janeiro, RJ, CEP 21941-902, Brazil.
| | - Claudio José Barbedo
- Seed Research Center, Institute of Botany, CP 68041, São Paulo, SP, 04045-972, Brazil
| | | | | | - Márcia Regina Braga
- Research Center in Physiology and Biochemistry, Institute of Botany, CP 68041, São Paulo, SP, 04045-972, Brazil.
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6
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Niñoles R, Planes D, Arjona P, Ruiz-Pastor C, Chazarra R, Renard J, Bueso E, Forment J, Serrano R, Kranner I, Roach T, Gadea J. Comparative analysis of wild-type accessions reveals novel determinants of Arabidopsis seed longevity. PLANT, CELL & ENVIRONMENT 2022; 45:2708-2728. [PMID: 35672914 DOI: 10.1111/pce.14374] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2022] [Revised: 04/27/2022] [Accepted: 06/01/2022] [Indexed: 06/15/2023]
Abstract
Understanding the genetic factors involved in seed longevity is of paramount importance in agricultural and ecological contexts. The polygenic nature of this trait suggests that many of them remain undiscovered. Here, we exploited the contrasting seed longevity found amongst Arabidopsis thaliana accessions to further understand this phenomenon. Concentrations of glutathione were higher in longer-lived than shorter-lived accessions, supporting that redox poise plays a prominent role in seed longevity. However, high seed permeability, normally associated with shorter longevity, is also present in long-lived accessions. Dry seed transcriptome analysis indicated that the contribution to longevity of stored messenger RNA (mRNAs) is complex, including mainly accession-specific mechanisms. The detrimental effect on longevity caused by other factors may be counterbalanced by higher levels of specific mRNAs stored in dry seeds, for instance those of heat-shock proteins. Indeed, loss-of-function mutant analysis demonstrated that heat-shock factors HSF1A and 1B contributed to longevity. Furthermore, mutants of the stress-granule zinc-finger protein TZF9 or the spliceosome subunits MOS4 or MAC3A/MAC3B, extended seed longevity, positioning RNA as a novel player in the regulation of seed viability. mRNAs of proteins with putative relevance to longevity were also abundant in shorter-lived accessions, reinforcing the idea that resistance to ageing is determined by multiple factors.
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Affiliation(s)
- Regina Niñoles
- Department of Stress, Instituto de Biología Molecular y Celular de Plantas (IBMCP), Ciudad Politécnica de la Innovación (CPI), Universitat Politècnica de València (UPV)-Consejo Superior de Investigaciones Científicas (CSIC), Valencia, Spain
| | - Dolores Planes
- Department of Stress, Instituto de Biología Molecular y Celular de Plantas (IBMCP), Ciudad Politécnica de la Innovación (CPI), Universitat Politècnica de València (UPV)-Consejo Superior de Investigaciones Científicas (CSIC), Valencia, Spain
| | - Paloma Arjona
- Department of Stress, Instituto de Biología Molecular y Celular de Plantas (IBMCP), Ciudad Politécnica de la Innovación (CPI), Universitat Politècnica de València (UPV)-Consejo Superior de Investigaciones Científicas (CSIC), Valencia, Spain
| | - Carmen Ruiz-Pastor
- Department of Stress, Instituto de Biología Molecular y Celular de Plantas (IBMCP), Ciudad Politécnica de la Innovación (CPI), Universitat Politècnica de València (UPV)-Consejo Superior de Investigaciones Científicas (CSIC), Valencia, Spain
| | - Rubén Chazarra
- Department of Stress, Instituto de Biología Molecular y Celular de Plantas (IBMCP), Ciudad Politécnica de la Innovación (CPI), Universitat Politècnica de València (UPV)-Consejo Superior de Investigaciones Científicas (CSIC), Valencia, Spain
| | - Joan Renard
- Department of Stress, Instituto de Biología Molecular y Celular de Plantas (IBMCP), Ciudad Politécnica de la Innovación (CPI), Universitat Politècnica de València (UPV)-Consejo Superior de Investigaciones Científicas (CSIC), Valencia, Spain
| | - Eduardo Bueso
- Department of Stress, Instituto de Biología Molecular y Celular de Plantas (IBMCP), Ciudad Politécnica de la Innovación (CPI), Universitat Politècnica de València (UPV)-Consejo Superior de Investigaciones Científicas (CSIC), Valencia, Spain
| | - Javier Forment
- Department of Stress, Instituto de Biología Molecular y Celular de Plantas (IBMCP), Ciudad Politécnica de la Innovación (CPI), Universitat Politècnica de València (UPV)-Consejo Superior de Investigaciones Científicas (CSIC), Valencia, Spain
| | - Ramón Serrano
- Department of Stress, Instituto de Biología Molecular y Celular de Plantas (IBMCP), Ciudad Politécnica de la Innovación (CPI), Universitat Politècnica de València (UPV)-Consejo Superior de Investigaciones Científicas (CSIC), Valencia, Spain
| | - Ilse Kranner
- Department of Botany and Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innsbruck, Austria
| | - Thomas Roach
- Department of Botany and Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innsbruck, Austria
| | - José Gadea
- Department of Stress, Instituto de Biología Molecular y Celular de Plantas (IBMCP), Ciudad Politécnica de la Innovación (CPI), Universitat Politècnica de València (UPV)-Consejo Superior de Investigaciones Científicas (CSIC), Valencia, Spain
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7
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Kim DS, Kim QW, Kim H, Kim HJ. Changes in the chemical, physical, and sensory properties of rice according to its germination rate. Food Chem 2022; 388:133060. [PMID: 35483295 DOI: 10.1016/j.foodchem.2022.133060] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2021] [Revised: 03/08/2022] [Accepted: 04/21/2022] [Indexed: 01/04/2023]
Abstract
This study aimed to decipher the association among the physicochemical properties, sensory quality, and germination rate of rice samples stored at different storage conditions and for different durations (stored at 10, 20, and 30 °C for 8 months). The germination rate of the samples varied from 0.3 to 98.7%. A reduced germination rate increased the lipid oxidation, hardness, and most pasting properties of rice, whereas seed viability, moisture content, and adhesiveness were reduced. Amylose and protein contents were not influenced by the changes in germination rate. However, with a decrease in germination rate, the surface endosperm cells were aggregated, whereas the sizes of inner endosperm cells in cooked rice were reduced. Several metabolites involved in rice sensory quality were also altered, and a related pathway was proposed. Collectively, these results suggest that germination rate could serve as a potential indicator to track the changes in rice quality.
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Affiliation(s)
- Dong-Shin Kim
- Institute of Animal Medicine, Gyeongsang National University, 501 Jinjudaero, Jinju, Gyeongsang, Republic of Korea
| | - Qui Woung Kim
- Korea Food Research Institute, Research Group of Consumer Safety, 245 Nongsaengmyeong-ro, Iseo-myeon, Wanju-Gun, Jeollabuk-do 55365, Republic of Korea
| | - Hoon Kim
- Korea Food Research Institute, Research Group of Consumer Safety, 245 Nongsaengmyeong-ro, Iseo-myeon, Wanju-Gun, Jeollabuk-do 55365, Republic of Korea.
| | - Hyun-Jin Kim
- Institute of Animal Medicine, Gyeongsang National University, 501 Jinjudaero, Jinju, Gyeongsang, Republic of Korea; Division of Applied Life Sciences (BK21 Four), Department of Food Science & Technology, and Institute of Agriculture and Life Science, Gyeongsang National University, 501 Jinjudaero, Jinju, Gyeongsang, Republic of Korea.
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8
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Li BB, Zhang SB, Lv YY, Wei S, Hu YS. Reactive oxygen species-induced protein carbonylation promotes deterioration of physiological activity of wheat seeds. PLoS One 2022; 17:e0263553. [PMID: 35358205 PMCID: PMC8970375 DOI: 10.1371/journal.pone.0263553] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2022] [Accepted: 03/09/2022] [Indexed: 11/18/2022] Open
Abstract
During the seed aging process, reactive oxygen species (ROS) can induce the carbonylation of proteins, which changes their functional properties and affects seed vigor. However, the impact and regulatory mechanisms of protein carbonylation on wheat seed vigor are still unclear. In this study, we investigated the changes in wheat seed vigor, carbonyl protein content, ROS content and embryo cell structure during an artificial aging process, and we analyzed the correlation between protein carbonylation and seed vigor. During the artificial wheat-seed aging process, the activity levels of antioxidant enzymes and the contents of non-enzyme antioxidants decreased, leading to the accumulation of ROS and an increase in the carbonyl protein content, which ultimately led to a decrease in seed vigor, and there was a significant negative correlation between seed vigor and carbonyl protein content. Moreover, transmission electron microscopy showed that the contents of protein bodies in the embryo cells decreased remarkably. We postulate that during the wheat seed aging process, an imbalance in ROS production and elimination in embryo cells leads to the carbonylation of proteins, which plays a negative role in wheat seed vigor.
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Affiliation(s)
- Bang-Bang Li
- College of Biological Engineering, Henan University of Technology, Zhengzhou, 450001, China
| | - Shuai-Bing Zhang
- College of Biological Engineering, Henan University of Technology, Zhengzhou, 450001, China
| | - Yang-Yong Lv
- College of Biological Engineering, Henan University of Technology, Zhengzhou, 450001, China
| | - Shan Wei
- College of Biological Engineering, Henan University of Technology, Zhengzhou, 450001, China
| | - Yuan-Sen Hu
- College of Biological Engineering, Henan University of Technology, Zhengzhou, 450001, China
- * E-mail:
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9
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Chen X, Börner A, Xin X, Nagel M, He J, Li J, Li N, Lu X, Yin G. Comparative Proteomics at the Critical Node of Vigor Loss in Wheat Seeds Differing in Storability. FRONTIERS IN PLANT SCIENCE 2021; 12:707184. [PMID: 34527008 PMCID: PMC8435634 DOI: 10.3389/fpls.2021.707184] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/17/2021] [Accepted: 08/10/2021] [Indexed: 06/13/2023]
Abstract
The critical node (CN, 85% germination) of seed viability is an important threshold for seed regeneration decisions after long-term conservation. Dependent on the germplasm, the storage period until CN is reached varies and information on the divergence of the proteomic profiles is limited. Therefore, the study aims to identify key proteins and mechanisms relevant for a long plateau phase and a late CN during artificial seed aging of wheat. Seeds of the storage-tolerant genotype (ST) TRI 23248, and the storage-sensitive genotype (SS) TRI 10230 were exposed to artificial ageing (AA) and extracted embryos of imbibed seeds were analyzed using an iTRAQ-based proteomic technique. ST and SS required AA for 24 and 18 days to reach the CN, respectively. Fifty-seven and 165 differentially abundant proteins (DAPs) were observed in the control and aged groups, respectively. Interestingly, a higher activity in metabolic processes, protein synthesis, transcription, cell growth/division, and signal transduction were already found in imbibed embryos of control ST seeds. After AA, 132 and 64 DAPs were accumulated in imbibed embryos of both aged ST and SS seeds, respectively, which were mainly associated with cell defense, rescue, and metabolism. Moreover, 78 DAPs of ST appeared before CN and were mainly enriched in biological pathways related to the maintenance of redox and carbon homeostasis and they presented a stronger protein translation ability. In contrast, in SS, only 3 DAPs appeared before CN and were enriched only in the structural constituents of the cytoskeleton. In conclusion, a longer span of plateau phase might be obtained in seeds when proteins indicate an intense stress response before CN and include the effective maintenance of cellular homeostasis, and avoidance of excess accumulation of cytotoxic compounds. Although key proteins, inherent factors and the precise regulatory mechanisms need to be further investigated, the found proteins may also have functional potential roles during long-term seed conservation.
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Affiliation(s)
- Xiuling Chen
- National Crop Genebank, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China
- Applied Technology Research and Development Center for Sericulture and Special Local Products of Hebei Universities, Institute of Sericulture, Chengde Medical University, Chengde, China
| | - Andreas Börner
- Department of Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
| | - Xia Xin
- National Crop Genebank, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Manuela Nagel
- Department of Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
| | - Juanjuan He
- National Crop Genebank, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Jisheng Li
- Applied Technology Research and Development Center for Sericulture and Special Local Products of Hebei Universities, Institute of Sericulture, Chengde Medical University, Chengde, China
| | - Na Li
- Applied Technology Research and Development Center for Sericulture and Special Local Products of Hebei Universities, Institute of Sericulture, Chengde Medical University, Chengde, China
| | - Xinxiong Lu
- National Crop Genebank, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Guangkun Yin
- National Crop Genebank, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China
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10
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Biochemical aspects of seeds from Cannabis sativa L. plants grown in a mountain environment. Sci Rep 2021; 11:3927. [PMID: 33594196 PMCID: PMC7887209 DOI: 10.1038/s41598-021-83290-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2020] [Accepted: 01/22/2021] [Indexed: 01/31/2023] Open
Abstract
Cannabis sativa L. (hemp) is a versatile plant which can adapt to various environmental conditions. Hempseeds provide high quality lipids, mainly represented by polyunsaturated acids, and highly digestible proteins rich of essential aminoacids. Hempseed composition can vary according to plant genotype, but other factors such as agronomic and climatic conditions can affect the presence of nutraceutic compounds. In this research, seeds from two cultivars of C. sativa (Futura 75 and Finola) grown in a mountain environment of the Italian Alps were analyzed. The main purpose of this study was to investigate changes in the protein profile of seeds obtained from such environments, using two methods (sequential and total proteins) for protein extraction and two analytical approaches SDS-PAGE and 2D-gel electrophoresis, followed by protein identification by mass spectrometry. The fatty acids profile and carotenoids content were also analysed. Mountain environments mainly affected fatty acid and protein profiles of Finola seeds. These changes were not predictable by the sole comparison of certified seeds from Futura 75 and Finola cultivars. The fatty acid profile confirmed a high PUFA content in both cultivars from mountain area, while protein analysis revealed a decrease in the protein content of Finola seeds from the experimental fields.
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Yan H, Mao P. Comparative Time-Course Physiological Responses and Proteomic Analysis of Melatonin Priming on Promoting Germination in Aged Oat ( Avena sativa L.) Seeds. Int J Mol Sci 2021; 22:ijms22020811. [PMID: 33467472 PMCID: PMC7830126 DOI: 10.3390/ijms22020811] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Revised: 01/05/2021] [Accepted: 01/12/2021] [Indexed: 01/25/2023] Open
Abstract
Melatonin priming is an effective strategy to improve the germination of aged oat (Avena sativa L.) seeds, but the mechanism involved in its time-course responses has remained largely unknown. In the present study, the phenotypic differences, ultrastructural changes, physiological characteristics, and proteomic profiles were examined in aged and melatonin-primed seed (with 10 μM melatonin treatment for 12, 24, and 36 h). Thus, 36 h priming (T36) had a better remediation effect on aged seeds, reflecting in the improved germinability and seedlings, relatively intact cell ultrastructures, and enhanced antioxidant capacity. Proteomic analysis revealed 201 differentially abundant proteins between aged and T36 seeds, of which 96 were up-accumulated. In melatonin-primed seeds, the restoration of membrane integrity by improved antioxidant capacity, which was affected by the stimulation of jasmonic acid synthesis via up-accumulation of 12-oxo-phytodienoic acid reductase, might be a candidate mechanism. Moreover, the relatively intact ultrastructures enabled amino acid metabolism and phenylpropanoid biosynthesis, which were closely associated with energy generation through intermediates of pyruvate, phosphoenolpyruvate, fumarate, and α-ketoglutarate, thus providing energy, active amino acids, and secondary metabolites necessary for germination improvement of aged seeds. These findings clarify the time-course related pathways associated with melatonin priming on promoting the germination of aged oat seeds.
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Affiliation(s)
- Huifang Yan
- Forage Seed Laboratory, China Agricultural University, Beijing 100193, China;
- Grassland Agri-Husbandry Research Center, College of Grassland Science, Qingdao Agricultural University, Qingdao 266109, China
| | - Peisheng Mao
- Forage Seed Laboratory, China Agricultural University, Beijing 100193, China;
- Correspondence: ; Tel.: +86-010-62733311
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12
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Huang B, Gan L, Chen D, Zhang Y, Zhang Y, Liu X, Chen S, Wei Z, Tong L, Song Z, Zhang X, Cai D, Zhang C, He Y. Integration of small RNA, degradome and proteome sequencing in Oryza sativa reveals a delayed senescence network in tetraploid rice seed. PLoS One 2020; 15:e0242260. [PMID: 33186373 PMCID: PMC7665819 DOI: 10.1371/journal.pone.0242260] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2020] [Accepted: 10/29/2020] [Indexed: 12/14/2022] Open
Abstract
Seed of rice is an important strategic resource for ensuring the security of China's staple food. Seed deterioration as a result of senescence is a major problem during seed storage, which can cause major economic losses. Screening among accessions in rice germplasm resources for traits such as slow senescence and increased seed longevity during storage is, therefore, of great significance. However, studies on delayed senescence in rice have been based mostly on diploid rice seed to date. Despite better tolerance have been verified by the artificial aging treatment for polyploid rice seed, the delayed senescence properties and delayed senescence related regulatory mechanisms of polyploid rice seed are rarely reported, due to the lack of polyploid rice materials with high seed set. High-throughput sequencing was applied to systematically investigate variations in small RNAs, the degradome, and the proteome between tetraploid and diploid rice seeds. Degradome sequencing analysis of microRNAs showed that expression of miR-164d, which regulates genes encoding antioxidant enzymes, was changed significantly, resulting in decreased miRNA-mediated cleavage of target genes in tetraploid rice. Comparisons of the expression levels of small RNAs (sRNAs) in the tetraploid and diploid libraries revealed that 12 sRNAs changed significantly, consistent with the findings from degradome sequencing. Furthermore, proteomics also showed that antioxidant enzymes were up-regulated in tetraploid rice seeds, relative to diploids.
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Affiliation(s)
- Baosheng Huang
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, China
- Shandong Provincial Key Laboratory of Storage and Transportation Technology of Agricultural Products, Jinan, China
| | - Lu Gan
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, China
| | - Dongjie Chen
- Shandong Provincial Key Laboratory of Storage and Transportation Technology of Agricultural Products, Jinan, China
| | - Yachun Zhang
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, China
| | - Yujie Zhang
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, China
| | - Xiangli Liu
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, China
| | - Si Chen
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, China
| | - Zhisong Wei
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, China
| | - Liqi Tong
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, China
| | - Zhaojian Song
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, China
- Wuhan Polyploid Biology Technology Co. Ltd, Wuhan, China
| | - Xianhua Zhang
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, China
- Wuhan Polyploid Biology Technology Co. Ltd, Wuhan, China
| | - Detian Cai
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, China
- Wuhan Polyploid Biology Technology Co. Ltd, Wuhan, China
| | - Changfeng Zhang
- Shandong Provincial Key Laboratory of Storage and Transportation Technology of Agricultural Products, Jinan, China
- * E-mail: (YH); (CZ)
| | - Yuchi He
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, China
- Wuhan Polyploid Biology Technology Co. Ltd, Wuhan, China
- * E-mail: (YH); (CZ)
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13
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Li L, Wang F, Li X, Peng Y, Zhang H, Hey S, Wang G, Wang J, Gu R. Comparative analysis of the accelerated aged seed transcriptome profiles of two maize chromosome segment substitution lines. PLoS One 2019; 14:e0216977. [PMID: 31710606 PMCID: PMC6844465 DOI: 10.1371/journal.pone.0216977] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2019] [Accepted: 10/24/2019] [Indexed: 12/12/2022] Open
Abstract
Seed longevity is one of the most essential characteristics of seed quality. Two chromosome segment substitution lines, I178 and X178, which show significant differences in seed longevity, were subjected to transcriptome sequencing before and after five days of accelerated aging (AA) treatments. Compared to the non-aging treatment, 286 and 220 differentially expressed genes (DEGs) were identified after 5 days of aging treatment in I178 and X178, respectively. Of these DEGs, 98 were detected in both I178 and X178, which were enriched in Gene Ontology (GO) terms of the cellular component of the nuclear part, intracellular part, organelle and membrane. Only 86 commonly downregulated genes were enriched in GO terms of the carbohydrate derivative catabolic process. Additionally, transcriptome analysis of alternative splicing (AS) events in I178 and X178 showed that 63.6% of transcript isoforms occurred AS in all samples, and only 1.6% of transcript isoforms contained 169 genes that exhibited aging-specific AS arising after aging treatment. Combined with the reported QTL mapping result, 7 DEGs exhibited AS after aging treatment, and 13 DEGs in mapping interval were potential candidates that were directly or indirectly related to seed longevity.
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Affiliation(s)
- Li Li
- Seed Science and Technology Research Center, Beijing Innovation Center for Seed Technology (MOA), Beijing Key Laboratory for Crop Genetic Improvement, College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Feng Wang
- Seed Science and Technology Research Center, Beijing Innovation Center for Seed Technology (MOA), Beijing Key Laboratory for Crop Genetic Improvement, College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Xuhui Li
- Seed Science and Technology Research Center, Beijing Innovation Center for Seed Technology (MOA), Beijing Key Laboratory for Crop Genetic Improvement, College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Yixuan Peng
- Seed Science and Technology Research Center, Beijing Innovation Center for Seed Technology (MOA), Beijing Key Laboratory for Crop Genetic Improvement, College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Hongwei Zhang
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Stefan Hey
- Department of Agronomy, Iowa State University, Ames, Iowa, United States of America
| | - Guoying Wang
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Jianhua Wang
- Seed Science and Technology Research Center, Beijing Innovation Center for Seed Technology (MOA), Beijing Key Laboratory for Crop Genetic Improvement, College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
- * E-mail: (JW); (RG)
| | - Riliang Gu
- Seed Science and Technology Research Center, Beijing Innovation Center for Seed Technology (MOA), Beijing Key Laboratory for Crop Genetic Improvement, College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
- * E-mail: (JW); (RG)
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Li X, Liu S, Yuan G, Zhao P, Yang W, Jia J, Cheng L, Qi D, Chen S, Liu G. Comparative transcriptome analysis provides insights into the distinct germination in sheepgrass (Leymus chinensis) during seed development. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2019; 139:446-458. [PMID: 30999132 DOI: 10.1016/j.plaphy.2019.04.007] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2019] [Revised: 04/05/2019] [Accepted: 04/07/2019] [Indexed: 05/12/2023]
Abstract
Sheepgrass (Leymus chinensis ((Trin.) Tzvel)) is an important perennial forage grass that is widely distributed in the Eurasia steppe. The seed germination percentage show significant variation among the different germplasm in sheepgrass. However, the underlying molecular mechanisms of distinct germination during seed development are still mostly unknown. Here, we performed comparative transcriptomic analyses of high seed germination percentage (H) and low seed germination percentage (L) at 14, 28, and 42 days after pollination. After comparing 3 consecutive development stages, 9255, 5366, and 4306 genes were found to be significantly differently expressed between H and L. Pathway analysis indicated that transcripts related to starch and sucrose metabolism, phenylpropanoid biosynthesis, plant hormone signal transduction, amino sugar and nucleotide sugar metabolism, and photosynthesis were significantly changed between the two germplasm at three stages. ABA and GA metabolism- and signaling transduction-related genes were differentially expressed between two germplasm at development stages, suggesting that the reduced signaling of GA and ABA is likely to be related to seed germination and dormancy in sheepgrass. We also identified 81 transcription factor (TF) families, and some TFs genes such as NAC48, NAC78, WRKY80, ZnFP, C3H14 and ILR3 were significantly differential expressed in two germplasm. Our results provide insights into seed development, germination and dormancy in sheepgrass at the transcriptional level.
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Affiliation(s)
- Xiaoxia Li
- Key Laboratory of Plant Resources, Institute of Botany, The Chinese Academy of Sciences, Beijing, China
| | - Shu Liu
- Key Laboratory of Plant Resources, Institute of Botany, The Chinese Academy of Sciences, Beijing, China; University of Chinese Academy of Sciences, Beijing, China
| | - Guangxiao Yuan
- Key Laboratory of Plant Resources, Institute of Botany, The Chinese Academy of Sciences, Beijing, China
| | - Pincang Zhao
- College of Management Science and Engineering, Hebei University of Economics and Business, Shijiazhuang, China
| | - Weiguang Yang
- Key Laboratory of Plant Resources, Institute of Botany, The Chinese Academy of Sciences, Beijing, China; University of Chinese Academy of Sciences, Beijing, China; Institute of Animal Science of Heilongjiang Province, Heilongjiang, Qiqihar, China
| | - Junting Jia
- Agro-biological Gene Research Center, Guangdong Academy of Agricultural Sciences, Guangzhou, China
| | - Liqin Cheng
- Key Laboratory of Plant Resources, Institute of Botany, The Chinese Academy of Sciences, Beijing, China
| | - Dongmei Qi
- Key Laboratory of Plant Resources, Institute of Botany, The Chinese Academy of Sciences, Beijing, China
| | - Shuangyan Chen
- Key Laboratory of Plant Resources, Institute of Botany, The Chinese Academy of Sciences, Beijing, China.
| | - Gongshe Liu
- Key Laboratory of Plant Resources, Institute of Botany, The Chinese Academy of Sciences, Beijing, China.
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15
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Lv Y, Tian P, Zhang S, Wang J, Hu Y. Dynamic proteomic changes in soft wheat seeds during accelerated ageing. PeerJ 2018; 6:e5874. [PMID: 30405971 PMCID: PMC6216954 DOI: 10.7717/peerj.5874] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2018] [Accepted: 09/30/2018] [Indexed: 11/20/2022] Open
Abstract
Previous research demonstrated that soft wheat cultivars have better post-harvest storage tolerance than harder cultivars during accelerated ageing. To better understand this phenomenon, a tandem mass tag-based quantitative proteomic analysis of soft wheat seeds was performed at different storage times during accelerated ageing (germination ratios of 97%, 45%, 28%, and 6%). A total of 1,010 proteins were differentially regulated, of which 519 and 491 were up- and downregulated, respectively. Most of the differentially expressed proteins were predicted to be involved in nutrient reservoir, enzyme activity and regulation, energy and metabolism, and response to stimulus functions, consistent with processes occurring in hard wheat during artificial ageing. Notably, defense-associated proteins including wheatwin-2, pathogenesis-related proteins protecting against fungal invasion, and glutathione S-transferase and glutathione synthetase participating in reactive oxygen species (ROS) detoxification, were upregulated compared to levels in hard wheat during accelerated ageing. These upregulated proteins might be responsible for the superior post-harvest storage-tolerance of soft wheat cultivars during accelerated ageing compared with hard wheat. Although accelerated ageing could not fully mimic natural ageing, our findings provided novel dynamic proteomic insight into soft wheat seeds during seed deterioration.
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Affiliation(s)
- Yangyong Lv
- College of Biological Engineering, Henan University of Technology, Zhengzhou, China
| | - Pingping Tian
- College of Biological Engineering, Henan University of Technology, Zhengzhou, China
| | - Shuaibing Zhang
- College of Biological Engineering, Henan University of Technology, Zhengzhou, China
| | - Jinshui Wang
- College of Biological Engineering, Henan University of Technology, Zhengzhou, China
| | - Yuansen Hu
- College of Biological Engineering, Henan University of Technology, Zhengzhou, China
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