Transcriptome analysis reveals the molecular mechanism of boron deficiency tolerance in leaves of boron-efficient Beta vulgaris seedlings

Integrative analysis of the transcriptome and proteome reveals the molecular responses of tobacco to boron deficiency

BACKGROUND

Boron (B) is an essential micronutrient for plants. Inappropriate B supply detrimentally affects the productivity of numerous crops. Understanding of the molecular responses of plants to different B supply levels would be of significance in crop improvement and cultivation practices to deal with the problem.

RESULTS

We conducted a comprehensive analysis of the transcriptome and proteome of tobacco seedlings to investigate the expression changes of genes/proteins in response to different B supply levels, with a particular focus on B deficiency. The global gene and protein expression profiles revealed the potential mechanisms involved in the responses of tobacco to B deficiency, including up-regulation of the NIP5;1-BORs module, complex regulation of genes/proteins related to cell wall metabolism, and up-regulation of the antioxidant machinery.

CONCLUSION

Our results demonstrated that B deficiency caused severe morphological and physiological disorders in tobacco seedlings, and revealed dynamic expression changes of tobacco genes/proteins in response to different B supply levels, especially to B deficiency, thus offering valuable insights into the molecular responses of tobacco to B deficiency.

Genome-wide transcriptome profiling of mulberry (Morus alba) response to boron deficiency and toxicity reveal candidate genes associated with boron tolerance in leaves

Mulberry (Morus alba) is an essential plant with countless economic benefits; however, its growth and metabolic processes are hampered by boron (B) stresses. Very little research has been performed to elucidate boron tolerance and detoxification mechanisms in this species. The M. alba cultivar, Yu-711, was exposed to five different concentrations of boric acid (H3BO3), including deficient (T1; 0 mM) moderate B deficiency (T2; 0.02 mM), sufficient (CK; 0.1 mM) and toxic (T3 and T4; 0.5 and 1 mM) levels for 18 days of growth in pots experiment. Transcriptome analysis of B deficiency and toxicity treatments was performed on mulberry leaves. The transcriptome data reveal that a total of 6114 genes were differentially expressed (DEGs), of which 3830 were up-regulated and 2284 were down-regulated. A comparative analysis between treatment groups CK-vs-T1 (deficiency) and CK-vs-T4 (toxicity) indicates that 590 and 1383 genes were down-regulated in both deficiency and B toxicity, respectively. The results show that 206 genes were differentially expressed in all treatments. B deficiency and toxicity significantly altered the expression of the key aquaporins (PIP2-1, PIP2-7, PIP2-4 and NIP3-1) and high-affinity boron transporter genes (BOR1 and BOR7). In addition, boron stress also altered the expression of antioxidants and photosynthesis-related genes. B stresses were found to alter several transcription factors including ERF1B, which is associated with the regulation of boron uptake and the synthesis and signaling of phytohormones. Unravelling the mechanisms of B tolerance and detoxification is important and would give us further insight into how B stresses affect mulberry plants.

Physiological and molecular mechanisms of Acacia melanoxylon stem in response to boron deficiency

Boron is an essential micronutrient for plant growth as it participates in cell wall integrity. The growth and development of Acacia melanoxylon stem can be adversely affected by a lack of boron. To explore the mechanism of boron deficiency in A. melanoxylon stem, the changes in morphological attributes, physiological, endogenous hormone levels, and the cell structure and component contents were examined. In addition, the molecular mechanism of shortened internodes resulting from boron deficiency was elucidated through transcriptome analysis. The results showed that boron deficiency resulted in decreased height, shortened internodes, and reduced root length and surface area, corresponding with decreased boron content in the roots, stems, and leaves of A. melanoxylon. In shortened internodes of stems, oxidative damage, and disordered hormone homeostasis were induced, the cell wall was thickened, hemicellulose and water-soluble pectin contents decreased, while the cellulose content increased under boron deficiency. Furthermore, plenty of genes associated with cell wall metabolism and structural components, including GAUTs, CESAs, IRXs, EXPs, TBLs, and XTHs were downregulated under boron deficiency. Alterations of gene expression in hormone signaling pathways comprising IAA, GA, CTK, ET, ABA, and JA were observed under boron deficiency. TFs, homologous to HD1s, NAC10, NAC73, MYB46s, MYB58, and ERF92s were found to interact with genes related to cell wall metabolism, and the structural components were identified. We established a regulatory mechanism network of boron deficiency-induced shortened internodes in A. melanoxylon based on the above results. This research provides a theoretical basis for understanding the response mechanism of woody plants to boron deficiency.

Insights into physiological and molecular mechanisms underlying efficient utilization of boron in different boron efficient Beta vulgaris L. varieties

Boron (B) deficiency and consequent limitation of plant yield and quality, particularly of sugar beet (Beta vulgaris L.) has emerged as a maior problem,which is exacerbating due to cultivar dependent variability in B deficiency tolerance. Pertinently, the current study was designed to elucidate the physiological and molecular mechanisms of B deficiency tolerance of sugar beet varieties KWS1197 (B-efficient variety) and KWS0143 (B-inefficient variety). A hydroponic experiment was conducted employing two B levels B0.1 (0.1 μM L^-1 H₃BO₃, deficiency) and B50 (50 μM L^-1 H₃BO₃, adequacy). Boron deficiency greatly inhibited root elongation and dry matter accumulation; however, formation of lateral roots stimulated and average root diameter was increased. Results exhibited that by up-regulating the expression of NIP5-1, NIP6-1, and BOR2, and suppressing the expression of BOR4, cultivar KWS1197, in contrast to KWS0143, managed to transfer sufficient amount of B to the aboveground plant parts, facilitating its effective absorption and utilization. Accumulation of malondialdehyde (MDA) and reactive oxygen species (ROS) was also mellowed in KWS1197, as well as the oxidative damage to root cells via preservation of the antioxidant enzyme system. Additionally, the expression of essential enzymes for biosynthesis of phytohormone (PYR/PYL) and lignin (COMT, POX, and CCoAOMT) were found to be highly up-regulated in KWS1197. Deductively, through effective B absorption and transportation, balanced nutrient accumulation, and an activated antioxidant enzyme system, B-efficient cultivars may cope with B deficiency while retaining a superior cellular structure to enable root development.

Transcriptome Analysis in Pyrus betulaefolia Roots in Response to Short-Term Boron Deficiency

Boron (B) deficiency stress is frequently observed in pear orchards and causes a considerable loss of productivity and fruit quality. Pyrus betulaefolia is one of the most important rootstocks that has been widely used in pear production. The present study confirmed that the boron form of different tissues showed various changes, and the free boron content was significantly decreased under the short-term B deficiency condition. Moreover, the ABA and JA content also significantly accumulated in the root after short-term B deficiency treatment. A comprehensive transcriptome analysis of 24 h B deficiency treatment P. betulaefolia root was performed in this study. Transcriptome results revealed a total of 1230 up-regulated and 642 down-regulated differentially expressed genes (DEGs), respectively. B deficiency significantly increased the expression of the key aquaporin gene NIP5-1. In addition, B deficiency also increased the expression of ABA (ZEP and NCED) and JA (LOX, AOS and OPR) synthesis genes. Several MYB, WRKY, bHLH and ERF transcription factors were induced by B deficiency stress, which may relate to the regulation of B uptake and plant hormone synthesis. Overall, these findings suggested that P. betulaefolia root had adaptive responses to short-term B deficiency stress by improved boron absorption ability and hormone (JA and ABA) synthesis. The transcriptome analysis provided further information for understanding the mechanism of the pear rootstock responses to B deficiency stress.

Effect of boron deficiency on the photosynthetic performance of sugar beet cultivars with contrasting boron efficiencies

Boron (B) deficiency severely affects the quality of sugar beet production, and the employment of nutrient-efficient varieties for cultivation is a crucial way to solve environmental and resource-based problems. However, the aspect of leaf photosynthetic performance among B-efficient sugar beet cultivars remains uncertain. The B deficient and B-sufficient treatments were conducted in the experiment using KWS1197 (B-efficient) and KWS0143 (B-inefficient) sugar beet cultivars as study materials. The objective of the present study was to determine the impacts of B deficiency on leaf phenotype, photosynthetic capacity, chloroplast structure, and photochemical efficiency of the contrasting B-efficiency sugar beet cultivars. The results indicated that the growth of sugar beet leaves were dramatically restricted, the net photosynthetic rate was significantly decreased, and the energy flux, quantum yield, and flux ratio of PSII reaction centers were adversely affected under B deficiency. Compared to the KWS0143 cultivar, the average leaf area ratio of the KWS1197 cultivar experienced less impact, and its leaf mass ratio (LMR) increased by 26.82% under B deficiency, whereas for the KWS0143 cultivar, the increase was only 2.50%. Meanwhile, the light energy capture and utilization capacity of PSII reaction centers and the proportion of absorbed light energy used for electron transfer were higher by 3.42% under B deficiency; KWS1197 cultivar managed to alleviate the photo-oxidative damage, which results from excessive absorbed energy (ABS/RC), by increasing the dissipated energy (DI_o/RC). Therefore, in response to B deprivation, the KWS1197 cultivar demonstrated greater adaptability in terms of morphological indices and photosynthetic functions, which not only explains the improved performance but also renders the measured parameters as the key features for varietal selection, providing a theoretical basis for the utilization of efficient sugar beet cultivars in future.

High boron stress leads to sugar beet (Beta vulgaris L.) toxicity by disrupting photosystem Ⅱ

This sugar beet acts as a soil remediator in areas where there are high levels of boron (B) in the soil, since it has a high requirement of boron (B) for growth, and has strong resistance to high B levels. Although B toxicity in different plants has been widely researched, little is known about the response of photosystem II (PSII) activity in sugar beet leaves to B toxicity at present. To clarify the growth and photosynthetic physiological response of sugar beet to B toxicity, the effects of different concentrations of H₃BO₃ (0.05, 1.5, 2.5,3.5 mM) on the growth, photosynthetic characteristics and antioxidant defense system of sugar beet seedlings were investigated by hydroponic experiments. In the present study, high B stress inhibited the growth of sugar beet and significantly decreased the biomass of the plants. There was a remarkable increase in the accumulation of B in the shoots, which affected photosynthesis and decreased the photosynthetic pigments. As B toxicity increased, leaf PSII activities and maximum photochemical efficiency of PSII (F_v/F_m) showed a tendency to decrease; at the same time, the photosynthetic performance index based on absorbed light energy (PI_ABS) decreased as well. Meanwhile, the energy allocation parameters of the PSII reaction center were changed, the light energy utilization capacity and the energy used for electron transfer were reduced and the thermal dissipation was increased at the same time. Furthermore, B toxicity decreased catalase (CAT) activity, increased peroxidase (POD) and superoxide dismutase (SOD) activities, and increased malondialdehyde (MDA) accumulation. According to the results obtained in this study, high B concentrations reduced the rate of photosynthesis and fluorescence, thus weakened antioxidant defense systems, and therefore inhibited the growth of sugar beet plants. Thus, in high B areas, sugar beet possesses excellent tolerance to high B levels and has a high B translocation capacity, so it can be used as a phytoremediation tool. This study provides a basis for the feasibility of sugar beet resistant to high B environments.

Growth, Gas Exchange, and Boron Distribution Characteristics in Two Grape Species Plants under Boron Deficiency Condition

The boron (B) deficiency tolerance capacity of two grape materials, ‘Xishui-4’ (Vitis flexuosa) and ‘Crystal’ (V. vinifera × V. labrusca), were evaluated using a potted experiment in order to identify the B-use efficiency of grape and screen B-efficient grape resources. The sterile lines of two genotypes of grape were used as test materials, and a large number of test-tube seedlings were obtained through rapid propagation. The test-tube seedlings were acclimatization and transplanted, and the tested seedlings were treated with B stress after survival. In this experiment, the materials were cultured in nutrient solution, which contained 0.00 (B0), 0.25 (B1), and 0.50 (control) mg·L−1 B concentrations, and the two genotypes of grape seedlings were cultured in vitro. The results were counted after 60 days of culture. The results showed that the B deficiency significantly reduced the growth parameters such as plant height, leaf area, total root length, and dry biomass of the two genotypes, and the inhibition of ‘Crystal’ growth parameters was greater than that of ‘Xishui-4’. Moreover, the B deficiency also affected photosynthesis of the two genotypes, such as decreased leaf photosynthetic pigments, net photosynthesis rate, transpiration rate, stomatal conductance, intercellular carbon dioxide concentration, and stomatal density. Interestingly, the decrease ranges of ‘Crystal’ were greater than those of ‘Xishui-4’, indicating that ‘Crystal’ photosynthesis was more susceptible to B deficiency. Under the control condition, the concentration and accumulation of B in ‘Crystal’ were significantly higher than those in ‘Xishui-4’. However, under the condition of B deficiency, the B concentration, accumulation amount, accumulation rate, utilization index, and tolerance index of ‘Xishui-4’ were higher than those of ‘Crystal’, and the B transport capacity of ‘Xishui-4’ was more stable, indicating that ‘Xishui-4’ had a better tolerance against B-deficient stress than ‘Crystal’ did. Therefore, ‘Xishui-4’ is a plant with strong adaptability to B deficiency stress, which can be used as B efficient grape resources and a genetic improvement of B efficient grape.