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Dong S, Liu L, Ling NNA, May EF, Johns ML, Robinson N. Toward Quantifying the Chemical Sensitivity of Nuclear Spin Surface Relaxivity in Mesoporous Media. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2024; 40:16160-16171. [PMID: 39045723 DOI: 10.1021/acs.langmuir.4c01245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/25/2024]
Abstract
Low-field nuclear magnetic resonance (NMR) relaxation is a promising non-invasive technique for characterizing solid-liquid interactions within functional porous materials. However, the ability of the solid-liquid interface to enhance adsorbate relaxation rates, known as the surface relaxivity, in the case of different solvents and reagents involved in various chemical processes has yet to be evaluated in a quantitative manner. In this study, we systematically explore the surface relaxation characteristics of 10 liquid adsorbates (cyclohexane, acetone, water, and 7 alcohols, including ethylene glycol) confined within mesoporous silicas with pore sizes between 6 and 50 nm using low-field (12.7 MHz) two-dimensional 1H T1-T2 relaxation measurements. Functional-group-specific relaxation phenomena associated with the alkyl and hydroxyl groups of the confined alcohols are clearly distinguished; we report the dependence of both longitudinal (T1) and transverse (T2) relaxation rates of these 1H-bearing moieties on pore surface-to-volume ratio, facilitating the quantification and assignment of surface relaxivity values to specific functional groups within the same adsorbate molecule for the first time. We further demonstrate that alkyl group transverse surface relaxivities correlate strongly with the alkyl/hydroxyl ratio of the adsorbates assessed, providing evidence for a simple, quantitative relationship between surface relaxivity and interfacial chemistry. Overall, our observations highlight potential pitfalls in the application of NMR relaxation for the evaluation of pore size distributions using hydroxylated probe molecules, and provide motivation for the exploration of nuclear spin relaxation measurements as a route to adsorbate identity within functional porous materials.
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Affiliation(s)
- Shuang Dong
- Department of Chemical Engineering, The University of Western Australia, Perth, Western Australia 6009, Australia
- Key Laboratory of Ocean Energy Utilization and Energy Conservation of Ministry of Education, Dalian University of Technology, Dalian, Liaoning 116024, People's Republic of China
| | - Libin Liu
- Department of Chemical Engineering, The University of Western Australia, Perth, Western Australia 6009, Australia
| | - Nicholas N A Ling
- Department of Chemical Engineering, The University of Western Australia, Perth, Western Australia 6009, Australia
| | - Eric F May
- Department of Chemical Engineering, The University of Western Australia, Perth, Western Australia 6009, Australia
| | - Michael L Johns
- Department of Chemical Engineering, The University of Western Australia, Perth, Western Australia 6009, Australia
| | - Neil Robinson
- Department of Chemical Engineering, The University of Western Australia, Perth, Western Australia 6009, Australia
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2
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Steinrücken E, Weigler M, Kloth S, Vogel M. Complex dynamics of partially freezable confined water revealed by combined experimental and computational studies. J Chem Phys 2024; 161:014706. [PMID: 38949591 DOI: 10.1063/5.0215451] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2024] [Accepted: 06/10/2024] [Indexed: 07/02/2024] Open
Abstract
We investigate water dynamics in mesoporous silica across partial crystallization by combining broadband dielectric spectroscopy (BDS), nuclear magnetic resonance (NMR), and molecular dynamics simulations (MDS). Exploiting the fact that not only BDS but also NMR field-cycling relaxometry and stimulated-echo experiments provide access to dynamical susceptibilities in broad frequency and temperature ranges, we study both the fully liquid state above the melting point Tm and the dynamics of coexisting water and ice phases below this temperature. It is found that partial crystallization leads to a change in the temperature dependence of rotational correlation times τ, which occurs in addition to previously reported dynamical crossovers of confined water and depends on the pore diameter. Furthermore, we observe that dynamical susceptibilities of water are strongly asymmetric in the fully liquid state, whereas they are much broader and nearly symmetric in the partially frozen state. Finally, water in the nonfreezable interfacial layer below Tm does not exhibit a much debated dynamical crossover at ∼220 K. We argue that its dynamics is governed by a static energy landscape, which results from the interaction with the bordering silica and ice surfaces and features a Gaussian-like barrier distribution. Consistently, our MDS analysis of the motional mechanism reveals a hopping motion of water in thin interfacial layers. The rotational correlation times of the confined ice phases follow Arrhenius laws. While the values of τ depend on the pore diameter, freezable water in various types of confinements and mixtures shows similar activation energies of Ea ≈ 0.43 eV.
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Affiliation(s)
- Elisa Steinrücken
- Institute for Condensed Matter Physics, Technische Universität Darmstadt, Hochschulstr. 6, 64289 Darmstadt, Germany
| | - Max Weigler
- Institute for Condensed Matter Physics, Technische Universität Darmstadt, Hochschulstr. 6, 64289 Darmstadt, Germany
| | - Sebastian Kloth
- Institute for Condensed Matter Physics, Technische Universität Darmstadt, Hochschulstr. 6, 64289 Darmstadt, Germany
| | - Michael Vogel
- Institute for Condensed Matter Physics, Technische Universität Darmstadt, Hochschulstr. 6, 64289 Darmstadt, Germany
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3
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Kozinenko VP, Kiryutin AS, Yurkovskaya AV. Exploring weak ligand-protein interactions by relaxometry of long-lived spin order. Phys Chem Chem Phys 2024; 26:15968-15977. [PMID: 38775038 DOI: 10.1039/d4cp00582a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2024]
Abstract
Relaxation times of nuclear spins often serve as a valuable source of information on the dynamics of various biochemical processes. Measuring relaxation as a function of the external magnetic field turned out to be extremely useful for the studies of weak ligand-protein interactions. We demonstrate that observing the relaxation of the long-lived spin order instead of longitudinal magnetization extends the capability of this approach. We studied the field-dependent relaxation of the longitudinal magnetization and the singlet order (SO) of methylene protons in alanine-glycine dipeptide and citrate in the presence of human serum albumin (HSA). As a result, SO relaxation proved to be more sensitive to ligand-protein interaction, providing higher relaxation contrast for various HSA concentrations. To assess the parameters of the binding process in more details, we utilized a simple analytical relaxation model to fit the experimental field dependences for both SO and T1 relaxation. We also tested the validity of our approach in the experiments with trimethylsilylpropanoic acid (TSP) used as a competitor in ligand binding with HSA.
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4
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Małkowska-Kowalczyk M, Żulewska J, Kruk D, Mieloch A. Dynamic water profile in various type of cheese analysed by means of Nuclear Magnetic Resonance relaxometry. J Dairy Sci 2024:S0022-0302(24)00901-9. [PMID: 38851570 DOI: 10.3168/jds.2024-24793] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2024] [Accepted: 05/06/2024] [Indexed: 06/10/2024]
Abstract
The aim of the study was to enquire to which extend 1H spin-lattice Nuclear Magnetic Resonance relaxometry data collected over a broad range of resonance frequencies (from 10kHz to 10MHz) have the potential to be used for assessing quality and authenticity of different categories of cheese. The following cheeses were selected mozzarella (M), processed cheese (C), pizza cheese (P) and pizza cheese with modified fat phase (PC), low-fat cheese (LF) and long ripened cheese (R). The cheeses from different production plants (1,2,3) and various cheese production batches (a, b, c) were used in the study. The samples from each group were subjected to instrumental composition analysis (FoodScan analyzer type 78810, FOSS, Hillerod, Denmark), water activity assessment (AQUA LAB 4TEV analyzer, type S40001855, USA) and determination of the NMRD profiles (SMARtracer FFC relaxometer, Stelar S.r.l, Italy, 2017). The state and dynamics of water present in products as free and bound water largely determines the properties of food products, including cheeses. NMR relaxometry studies of cheese enable to reveal relaxation features characteristic of specific categories of cheese. Consequently, the studies can be treated as a step toward exploiting NMR relaxometry for accessing quality and authenticity of cheese. It was shown that at low resonance frequencies, the lower the moisture, the larger the relaxation rate. The durability and quality of cheeses depend on the presence and condition of water, so it is necessary to find a relationship between the presence, condition and mobility of water in cheeses, to increase and improve the quality and extend the shelf life.
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Affiliation(s)
- Monika Małkowska-Kowalczyk
- Department of Dairy Science and Quality Management, Faculty of Food Science, University of Warmia and Mazury in Olsztyn, Poland.
| | - Justyna Żulewska
- Department of Dairy Science and Quality Management, Faculty of Food Science, University of Warmia and Mazury in Olsztyn, Poland
| | - Danuta Kruk
- Department of Physics and Biophysics, Faculty of Food Science, University of Warmia and Mazury in Olsztyn, Poland
| | - Adrianna Mieloch
- Department of Human Histology and Embryology, Faculty of Medicine, University of Warmia and Mazury in Olsztyn, Poland
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5
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Masiewicz E, Ullah F, Mieloch A, Godlewski J, Kruk D. Dynamical properties of solid and hydrated collagen: Insight from nuclear magnetic resonance relaxometry. J Chem Phys 2024; 160:165101. [PMID: 38656443 DOI: 10.1063/5.0191409] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2023] [Accepted: 03/07/2024] [Indexed: 04/26/2024] Open
Abstract
1H spin-lattice Nuclear Magnetic Resonance relaxometry experiments have been performed for collagen and collagen-based artificial tissues in the frequency range of 10 kHz-20 MHz. The studies were performed for non-hydrated and hydrated materials. The relaxation data have been interpreted as including relaxation contributions originating from 1H-1H and 1H-14N dipole-dipole interactions, the latter leading to Quadrupole Relaxation Enhancement effects. The 1H-1H relaxation contributions have been decomposed into terms associated with dynamical processes on different time scales. A comparison of the parameters for the non-hydrated and hydrated systems has shown that hydration leads to a decrease in the dipolar relaxation constants without significantly affecting the dynamical processes. In the next step, the relaxation data for the hydrated systems were interpreted in terms of a model assuming two-dimensional translational diffusion of water molecules in the vicinity of the macromolecular surfaces and a sub-diffusive motion leading to a power law of the frequency dependencies of the relaxation rates. It was found that the water diffusion process is slowed down by at least two orders of magnitude compared to bulk water diffusion. The frequency dependencies of the relaxation rates in hydrated tissues and hydrated collagen are characterized by different power laws (ωH-β, where ωH denotes the 1H resonance frequency): the first of about 0.4 and the second close to unity.
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Affiliation(s)
- Elzbieta Masiewicz
- Department of Physics and Biophysics, University of Warmia and Mazury in Olsztyn, Oczapowskiego 4, 10-719 Olsztyn, Poland
| | - Farman Ullah
- Department of Physics and Biophysics, University of Warmia and Mazury in Olsztyn, Oczapowskiego 4, 10-719 Olsztyn, Poland
| | - Adrianna Mieloch
- Department of Human Histology and Embryology, University of Warmia and Mazury in Olsztyn, Warszawska 30, 10-082 Olsztyn, Poland
| | - Janusz Godlewski
- Department of Human Histology and Embryology, University of Warmia and Mazury in Olsztyn, Warszawska 30, 10-082 Olsztyn, Poland
| | - Danuta Kruk
- Department of Physics and Biophysics, University of Warmia and Mazury in Olsztyn, Oczapowskiego 4, 10-719 Olsztyn, Poland
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6
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Leal Auccaise AC, Masiewicz E, Kolodziejski K, Kruk D. Dynamic of binary molecular systems-Advantages and limitations of NMR relaxometry. J Chem Phys 2024; 160:144116. [PMID: 38606737 DOI: 10.1063/5.0188257] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Accepted: 03/12/2024] [Indexed: 04/13/2024] Open
Abstract
1H spin-lattice relaxation studies have been performed for binary systems, including glycerol as the first component and alanine, glycine, and aspartic acid (with different levels of deuteration) as the second one. The relaxation studies have been performed in the frequency range from 10 kHz to 10 MHz vs temperature. A theoretical framework, including all relevant 1H-1H and 1H-2H relaxation pathways, has been formulated. The theory has been exploited for a thorough interpretation of a large set of the experimental data. The importance of the 1H-2H relaxation contributions has been discussed, and the possibility of revealing dynamical properties of individual liquid components in binary liquids has been carefully investigated. As far as the dynamical properties of the specific binary liquids, chosen as an example, are considered, it has been shown that in the presence of the second component (alanine, glycine, and aspartic acid), both molecular fractions undergo dynamics similar to that of glycerol in bulk.
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Affiliation(s)
- Adriane Consuelo Leal Auccaise
- Department of Physics and Biophysics, University of Warmia and Mazury in Olsztyn, Oczapowskiego 4, 10-719 Olsztyn, Poland
| | - Elzbieta Masiewicz
- Department of Physics and Biophysics, University of Warmia and Mazury in Olsztyn, Oczapowskiego 4, 10-719 Olsztyn, Poland
| | - Karol Kolodziejski
- Department of Physics and Biophysics, University of Warmia and Mazury in Olsztyn, Oczapowskiego 4, 10-719 Olsztyn, Poland
| | - Danuta Kruk
- Department of Physics and Biophysics, University of Warmia and Mazury in Olsztyn, Oczapowskiego 4, 10-719 Olsztyn, Poland
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7
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Tian Z, Jiang P, Xu R. NMR Relaxation of Gas Adsorbed in Microporous Material. J Phys Chem Lett 2024; 15:3023-3028. [PMID: 38465889 DOI: 10.1021/acs.jpclett.4c00221] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/12/2024]
Abstract
NMR relaxometry has been widely applied to characterize fluid confined in porous media because of its versatility, chemical selectivity, and noninvasive nature. Here we extend its usage to gas adsorbed in microporous materials by establishing a new quantitative model based on the molecular level NMR relaxation mechanism revealed by the molecular simulation of a prototypical adsorption system, CH4 adsorbed in ZIF-8. The model enables new NMR relaxometry-based characterization methods for thermodynamic, dynamic, and structural properties of adsorption systems, as demonstrated and validated by the experiments where the adsorption capacity and self-diffusivity of H2, CH4, and small alcohols adsorbed in ZIF-8 are deduced from the NMR relaxation data. The findings can serve for a better understanding of the composition-structure-properties relationships of a wide range of adsorption systems which is essential for the development and application of new functional microporous materials.
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Affiliation(s)
- Zijian Tian
- Key Laboratory for CO2 Utilization and Reduction Technology of Beijing, Department of Energy and Power Engineering, Tsinghua University, Beijing 100084, China
- Key Laboratory for Thermal Science and Power Engineering of Ministry of Education, Department of Energy and Power Engineering, Tsinghua University, Beijing 100084, China
| | - Peixue Jiang
- Key Laboratory for CO2 Utilization and Reduction Technology of Beijing, Department of Energy and Power Engineering, Tsinghua University, Beijing 100084, China
- Key Laboratory for Thermal Science and Power Engineering of Ministry of Education, Department of Energy and Power Engineering, Tsinghua University, Beijing 100084, China
| | - Ruina Xu
- Key Laboratory for CO2 Utilization and Reduction Technology of Beijing, Department of Energy and Power Engineering, Tsinghua University, Beijing 100084, China
- Key Laboratory for Thermal Science and Power Engineering of Ministry of Education, Department of Energy and Power Engineering, Tsinghua University, Beijing 100084, China
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8
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Stankiewicz A, Kasparek A, Masiewicz E, Kruk D. Diffusion of Water Molecules on the Surface of Silica Nanoparticles─Insights from Nuclear Magnetic Resonance Relaxometry. J Phys Chem B 2024; 128:1535-1543. [PMID: 38295281 PMCID: PMC10875636 DOI: 10.1021/acs.jpcb.3c06451] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Revised: 12/15/2023] [Accepted: 12/15/2023] [Indexed: 02/02/2024]
Abstract
1H spin-lattice nuclear magnetic resonance (NMR) relaxation experiments have been performed for water dispersions of functionalized silica nanoparticles of diameters of 25 and 45 nm. The experiments have been performed in a broad frequency range spanning 3 orders of magnitude, from 10 kHz to 10 MHz, versus temperature, from 313 to 263 K. On the basis of the data, two-dimensional translation diffusion (diffusion close to the nanoparticle surface within a layer of the order of a few diameters of water molecules) has been revealed. The translational correlation times as well as the residence life times on the nanoparticle surface have been determined. It has turned out that the residence lifetime is temperature-independent and is on the order of 5 × 10-6 s for the smaller nanoparticles and by about a factor of 3 longer for the larger ones. The translational correlation time for the case of 25 nm nanoparticles is also temperature-independent and yields about 6 × 10-7 s, while for the dispersion of the larger nanoparticles, the correlation times changed from about 8 × 10-7 s at 313 K to about 1.2 × 10-6 s at 263 K. In addition to the quantitative characterization of the two-dimensional translation diffusion, correlation times associated with bound water molecules have been determined. The studies have also given insights into the population of the bound and diffusing water on the surface water fractions.
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Affiliation(s)
- Aleksandra Stankiewicz
- Department of Physics and
Biophysics, University of Warmia & Mazury
in Olsztyn, Oczapowskiego 4, 10-719 Olsztyn, Poland
| | - Adam Kasparek
- Department of Physics and
Biophysics, University of Warmia & Mazury
in Olsztyn, Oczapowskiego 4, 10-719 Olsztyn, Poland
| | - Elzbieta Masiewicz
- Department of Physics and
Biophysics, University of Warmia & Mazury
in Olsztyn, Oczapowskiego 4, 10-719 Olsztyn, Poland
| | - Danuta Kruk
- Department of Physics and
Biophysics, University of Warmia & Mazury
in Olsztyn, Oczapowskiego 4, 10-719 Olsztyn, Poland
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9
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Vuong MDL, Horbenko Y, Frégnaux M, Christodoulou I, Martineau-Corcos C, Levitz P, Rollet AL, Gref R, Haouas M. Degradation and Erosion of Metal-Organic Frameworks: Comparative Study of a NanoMIL-100 Drug Delivery System. ACS APPLIED MATERIALS & INTERFACES 2024; 16:2086-2100. [PMID: 38166380 DOI: 10.1021/acsami.3c14301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/04/2024]
Abstract
To make a drug work better, the active substance can be incorporated into a vehicle for optimal protection and control of the drug delivery time and space. For making the drug carrier, the porous metal-organic framework (MOF) can offer high drug-loading capacity and various designs for effective drug delivery performance, biocompatibility, and biodegradability. Nevertheless, its degradation process is complex and not easily predictable, and the toxicity concern related to the MOF degradation products remains a challenge for their clinical translation. Here, we describe an in-depth molecular and nanoscale degradation mechanism of aluminum- and iron-based nanoMIL-100 materials exposed to phosphate-buffered saline. Using a combination of analytical tools, including X-ray photoelectron spectroscopy, nuclear magnetic resonance spectroscopy, small-angle X-ray scattering, and electron microscopy, we demonstrate qualitatively and quantitatively the formation of a new coordination bond between metal(III) and phosphate, trimesate release, and correlation between these two processes. Moreover, the extent of material erosion, i.e., bulk or surface erosion, was examined from the transformation of nanoparticles' surface, morphology, and interaction with water. Similar analyses show the impact of drug loading and surface coating on nanoMIL-100 degradation and drug release as a function of the metal-ligand binding strength. Our results indicate how the chemistry of nanoMIL-100(Al) and nanoMIL-100(Fe) drug carriers affects their degradation behaviors in a simulated physiological medium. This difference in behavior between the two nanoMIL-100s enables us to better correlate the nanoscale and atomic-scale mechanisms of the observed phenomena, thus validating the presented multiscale approach.
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Affiliation(s)
- Mai Dang Le Vuong
- Institut Lavoisier de Versailles (ILV), Université Paris-Saclay, UVSQ, CNRS, 78000 Versailles, France
- Institut des Sciences Moléculaires d'Orsay (ISMO), Université Paris-Saclay, CNRS, 91405 Orsay, France
- PHysicochimie des Electrolytes, Nanosystèmes InterfaciauX (PHENIX), Sorbonne Université, CNRS, 75252 Paris, France
| | - Yuliia Horbenko
- Institut Lavoisier de Versailles (ILV), Université Paris-Saclay, UVSQ, CNRS, 78000 Versailles, France
| | - Mathieu Frégnaux
- Institut Lavoisier de Versailles (ILV), Université Paris-Saclay, UVSQ, CNRS, 78000 Versailles, France
| | - Ioanna Christodoulou
- Institut des Sciences Moléculaires d'Orsay (ISMO), Université Paris-Saclay, CNRS, 91405 Orsay, France
| | | | - Pierre Levitz
- PHysicochimie des Electrolytes, Nanosystèmes InterfaciauX (PHENIX), Sorbonne Université, CNRS, 75252 Paris, France
| | - Anne-Laure Rollet
- PHysicochimie des Electrolytes, Nanosystèmes InterfaciauX (PHENIX), Sorbonne Université, CNRS, 75252 Paris, France
| | - Ruxandra Gref
- Institut des Sciences Moléculaires d'Orsay (ISMO), Université Paris-Saclay, CNRS, 91405 Orsay, France
| | - Mohamed Haouas
- Institut Lavoisier de Versailles (ILV), Université Paris-Saclay, UVSQ, CNRS, 78000 Versailles, France
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10
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Umut E, Beira MJ, Oztop MH, Sahiner N, Sebastião PJ, Kruk D. Water Dynamics in Dextran-Based Hydrogel Micro/Nanoparticles Studied by NMR Diffusometry and Relaxometry. J Phys Chem B 2023; 127:8950-8960. [PMID: 37812396 DOI: 10.1021/acs.jpcb.3c04452] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/10/2023]
Abstract
Water dynamics in mesoporous dextran hydrogel micro/nanoparticles was investigated by means of nuclear magnetic resonance (NMR) techniques. High-resolution 1H NMR spectra and pulsed field gradient (PFG) NMR diffusometry measurements obtained on swollen state dextran micro/nanogel revealed the existence of different fractions of water molecules based on their interaction with the gel matrix. In addition to the translational diffusion of bulk water, two more diffusion processes characterized with self-diffusion coefficients 1 and 2 orders of magnitude smaller than that of bulk water were identified. 1H spin-lattice relaxation dispersion profiles obtained for a broad range of Larmor frequencies using fast field cycling (FFC) and conventional NMR relaxometry techniques allowed us to further clarify the mechanisms of molecular motion. According to the water proton pool fractions and associated self-diffusion coefficients, it is shown that the relaxation contribution associated with reorientation-mediated translational motions (RMTDs) dominates the relaxation dispersion observed at intermediate frequencies. At very low frequencies, the spin-lattice relaxation rate is dominated by the slow solid-gel dynamics probed by the water molecules interacting with the pores' surface hydroxyl groups due to the rapid chemical exchange between surface hydroxyl groups and free water. The correlation time for the thumbling-like motion of the dextran gel was found to be in the submillisecond range. The values of the self-diffusion and coherence lengths associated with motion of water molecules interacting with the solid-gel particles are consistent with the particle size and pore size distributions obtained for the studied dextran gels.
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Affiliation(s)
- Evrim Umut
- Department of Medical Imaging Techniques, School of Healthcare, Dokuz Eylul University, 35330 Izmir, Turkey
- BioIzmir - Health Technologies Development and Accelerator Research Center, 35330 Izmir, Turkey
| | - Maria Jardim Beira
- CeFEMA - Center of Physics and Engineering of Advanced Materials and Department of Physics, Instituto Superior Técnico, Universidade de Lisboa, 1049-001 Lisbon, Portugal
| | - Mecit Halil Oztop
- Department of Food Engineering, Middle East Technical University, 06800 Ankara, Turkey
| | - Nurettin Sahiner
- Department of Chemistry, Çanakkale Onsekiz Mart University, 17020 Çanakkale, Turkey
- Department of Ophthalmology, Morsani College of Medicine, University of South Florida, 12901 B. Downs Blv., MDC 21, Tampa, Florida 33612, United States
| | - Pedro José Sebastião
- CeFEMA - Center of Physics and Engineering of Advanced Materials and Department of Physics, Instituto Superior Técnico, Universidade de Lisboa, 1049-001 Lisbon, Portugal
| | - Danuta Kruk
- NanoBioMedical Centre, Adam Mickiewicz University, Wszechnicy Piastowskiej 3, 61-614 Poznan, Poland
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11
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Gravelle S, Beyer D, Brito M, Schlaich A, Holm C. Assessing the Validity of NMR Relaxation Rates Obtained from Coarse-Grained Simulations of PEG-Water Mixtures. J Phys Chem B 2023. [PMID: 37327109 DOI: 10.1021/acs.jpcb.3c01646] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
NMR relaxometry is a powerful and well-established experimental approach for characterizing dynamic processes in soft matter systems. All-atom (AA) resolved simulations are typically employed to gain further microscopic insights while reproducing the relaxation rates R1. However, such approaches are limited to time and length scales that prevent to model systems such as long polymer chains or hydrogels. Coarse graining (CG) can overcome this barrier at the cost of losing atomistic details that impede the calculation of NMR relaxation rates. Here, we address this issue by performing a systematic characterization of dipolar relaxation rates R1 on a PEG-H2O mixture at two different levels of details: AA and CG. Remarkably, we show that NMR relaxation rates R1 obtained at the CG level obey the same trends when compared to AA calculations but with a systematic offset. This offset is due to, on the one hand, the lack of an intramonomer component and, on the other hand, the inexact positioning of the spin carriers. We show that the offset can be corrected for quantitatively by reconstructing a posteriori the atomistic details for the CG trajectories.
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Affiliation(s)
- Simon Gravelle
- Institute for Computational Physics, University of Stuttgart, D-70569 Stuttgart, Germany
| | - David Beyer
- Institute for Computational Physics, University of Stuttgart, D-70569 Stuttgart, Germany
| | - Mariano Brito
- Institute for Computational Physics, University of Stuttgart, D-70569 Stuttgart, Germany
| | - Alexander Schlaich
- Institute for Computational Physics, University of Stuttgart, D-70569 Stuttgart, Germany
- Stuttgart Center for Simulation Science (SC SimTech), University of Stuttgart, D-70569 Stuttgart, Germany
| | - Christian Holm
- Institute for Computational Physics, University of Stuttgart, D-70569 Stuttgart, Germany
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12
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Gravelle S, Haber-Pohlmeier S, Mattea C, Stapf S, Holm C, Schlaich A. NMR Investigation of Water in Salt Crusts: Insights from Experiments and Molecular Simulations. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2023. [PMID: 37207369 DOI: 10.1021/acs.langmuir.3c00036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
The evaporation of water from bare soil is often accompanied by the formation of a layer of crystallized salt, a process that must be understood in order to address the issue of soil salinization. Here, we use nuclear magnetic relaxation dispersion measurements to better understand the dynamic properties of water within two types of salt crusts: sodium chloride (NaCl) and sodium sulfate (Na2SO4). Our experimental results display a stronger dispersion of the relaxation time T1 with frequency for the case of sodium sulfate as compared to sodium chloride salt crusts. To gain insight into these results, we perform molecular dynamics simulations of salt solutions confined within slit nanopores made of either NaCl or Na2SO4. We find a strong dependence of the value of the relaxation time T1 on pore size and salt concentration. Our simulations reveal the complex interplay between the adsorption of ions at the solid surface, the structure of water near the interface, and the dispersion of T1 at low frequency, which we attribute to adsorption-desorption events.
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Affiliation(s)
- Simon Gravelle
- Institute for Computational Physics, University of Stuttgart, D-70569 Stuttgart, Germany
| | - Sabina Haber-Pohlmeier
- Institut für Wasser und Umweltsystemmodellierung, University of Stuttgart, D-70569 Stuttgart, Germany
| | - Carlos Mattea
- Institute of Physics, Technische Universität Ilmenau, Ilmenau 98693, Germany
| | - Siegfried Stapf
- Institute of Physics, Technische Universität Ilmenau, Ilmenau 98693, Germany
| | - Christian Holm
- Institute for Computational Physics, University of Stuttgart, D-70569 Stuttgart, Germany
| | - Alexander Schlaich
- Institute for Computational Physics, University of Stuttgart, D-70569 Stuttgart, Germany
- Stuttgart Center for Simulation Science (SC SimTech), University of Stuttgart, 70569 Stuttgart, Germany
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13
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Guseva S, Schnapka V, Adamski W, Maurin D, Ruigrok RWH, Salvi N, Blackledge M. Liquid-Liquid Phase Separation Modifies the Dynamic Properties of Intrinsically Disordered Proteins. J Am Chem Soc 2023; 145:10548-10563. [PMID: 37146977 DOI: 10.1021/jacs.2c13647] [Citation(s) in RCA: 12] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Liquid-liquid phase separation of flexible biomolecules has been identified as a ubiquitous phenomenon underlying the formation of membraneless organelles that harbor a multitude of essential cellular processes. We use nuclear magnetic resonance (NMR) spectroscopy to compare the dynamic properties of an intrinsically disordered protein (measles virus NTAIL) in the dilute and dense phases at atomic resolution. By measuring 15N NMR relaxation at different magnetic field strengths, we are able to characterize the dynamics of the protein in dilute and crowded conditions and to compare the amplitude and timescale of the different motional modes to those present in the membraneless organelle. Although the local backbone conformational sampling appears to be largely retained, dynamics occurring on all detectable timescales, including librational, backbone dihedral angle dynamics and segmental, chainlike motions, are considerably slowed down. Their relative amplitudes are also drastically modified, with slower, chain-like motions dominating the dynamic profile. In order to provide additional mechanistic insight, we performed extensive molecular dynamics simulations of the protein under self-crowding conditions at concentrations comparable to those found in the dense liquid phase. Simulation broadly reproduces the impact of formation of the condensed phase on both the free energy landscape and the kinetic interconversion between states. In particular, the experimentally observed reduction in the amplitude of the fastest component of backbone dynamics correlates with higher levels of intermolecular contacts or entanglement observed in simulations, reducing the conformational space available to this mode under strongly self-crowding conditions.
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Affiliation(s)
- Serafima Guseva
- Institut de Biologie Structurale, Université Grenoble Alpes-CEA-CNRS, 71, Avenue des Martyrs, 38000 Grenoble, France
| | - Vincent Schnapka
- Institut de Biologie Structurale, Université Grenoble Alpes-CEA-CNRS, 71, Avenue des Martyrs, 38000 Grenoble, France
| | - Wiktor Adamski
- Institut de Biologie Structurale, Université Grenoble Alpes-CEA-CNRS, 71, Avenue des Martyrs, 38000 Grenoble, France
| | - Damien Maurin
- Institut de Biologie Structurale, Université Grenoble Alpes-CEA-CNRS, 71, Avenue des Martyrs, 38000 Grenoble, France
| | - Rob W H Ruigrok
- Institut de Biologie Structurale, Université Grenoble Alpes-CEA-CNRS, 71, Avenue des Martyrs, 38000 Grenoble, France
| | - Nicola Salvi
- Institut de Biologie Structurale, Université Grenoble Alpes-CEA-CNRS, 71, Avenue des Martyrs, 38000 Grenoble, France
| | - Martin Blackledge
- Institut de Biologie Structurale, Université Grenoble Alpes-CEA-CNRS, 71, Avenue des Martyrs, 38000 Grenoble, France
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14
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Steinrücken E, Weigler M, Schiller V, Vogel M. Dynamical Susceptibilities of Confined Water from Room Temperature to the Glass Transition. J Phys Chem Lett 2023; 14:4104-4112. [PMID: 37126094 DOI: 10.1021/acs.jpclett.3c00580] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
We confine water to narrow silica pores, where crystallization is suppressed, and determine the dynamical susceptibilities of the liquid from room temperature down to the glass transition by combining broadband dielectric spectroscopy (BDS) with 1H and 2H nuclear magnetic resonance (NMR), in particular, by establishing NMR field-cycling relaxometry. For the correlation times, derivative analysis reveals Vogel-Fulcher-Tammann and Arrhenius regimes at T ≥ 215 K and T ≤ 160 K, respectively, which are separated by a broad crossover region. The continuous transition in the temperature dependence is accompanied by a gradual change from asymmetric high-temperature shapes of the dynamical susceptibilities to symmetric low-temperature ones and by a steady decrease of the dielectric relaxation strength. In the Arrhenius regime (Ea = 0.48 eV) at T ≤ 160 K, 2D 2H NMR spectra reveal quasi-isotropic water reorientation. We rationalize these results in terms of a crossover to an interface-affected, noncooperative relaxation involving both rotational and translational motions.
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Affiliation(s)
- Elisa Steinrücken
- Institute for Condensed Matter Physics, Technische Universität Darmstadt, Hochschulstraße 6, 64289 Darmstadt, Germany
| | - Max Weigler
- Institute for Condensed Matter Physics, Technische Universität Darmstadt, Hochschulstraße 6, 64289 Darmstadt, Germany
| | - Verena Schiller
- Institute for Condensed Matter Physics, Technische Universität Darmstadt, Hochschulstraße 6, 64289 Darmstadt, Germany
| | - Michael Vogel
- Institute for Condensed Matter Physics, Technische Universität Darmstadt, Hochschulstraße 6, 64289 Darmstadt, Germany
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15
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Robinson N, Nasharuddin R, Fridjonsson EO, Johns ML. NMR Surface Relaxivity in a Time-Dependent Porous System. PHYSICAL REVIEW LETTERS 2023; 130:126204. [PMID: 37027882 DOI: 10.1103/physrevlett.130.126204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Accepted: 02/21/2023] [Indexed: 06/19/2023]
Abstract
We demonstrate an unexpected decay-recovery behavior in the time-dependent ^{1}H NMR relaxation times of water confined within a hydrating porous material. Our observations are rationalized by considering the combined effects of decreasing material pore size and evolving interfacial chemistry, which facilitate a transition between surface-limited and diffusion-limited relaxation regimes. Such behavior necessitates the realization of temporally evolving surface relaxivity, highlighting potential caveats in the classical interpretation of NMR relaxation data obtained from complex porous systems.
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Affiliation(s)
- Neil Robinson
- Department of Chemical Engineering, The University of Western Australia, 35 Stirling Highway, Perth, Western Australia 6009, Australia
| | - Razyq Nasharuddin
- Department of Chemical Engineering, The University of Western Australia, 35 Stirling Highway, Perth, Western Australia 6009, Australia
| | - Einar O Fridjonsson
- Department of Chemical Engineering, The University of Western Australia, 35 Stirling Highway, Perth, Western Australia 6009, Australia
| | - Michael L Johns
- Department of Chemical Engineering, The University of Western Australia, 35 Stirling Highway, Perth, Western Australia 6009, Australia
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16
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Molecular Dynamics of Jelly Candies by Means of Nuclear Magnetic Resonance Relaxometry. Molecules 2023; 28:molecules28052230. [PMID: 36903475 PMCID: PMC10005792 DOI: 10.3390/molecules28052230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2022] [Revised: 02/12/2023] [Accepted: 02/16/2023] [Indexed: 03/04/2023] Open
Abstract
1H spin-lattice Nuclear Magnetic Resonance relaxation studies have been performed for different kinds of Haribo jelly and Vidal jelly in a very broad frequency range from about 10 kHz to 10 MHz to obtain insight into the dynamic and structural properties of jelly candies on the molecular level. This extensive data set has been thoroughly analyzed revealing three dynamic processes, referred to as slow, intermediate and fast dynamics occurring on the timescale of 10-6 s, 10-7 s and 10-8 s, respectively. The parameters have been compared for different kinds of jelly for the purpose of revealing their characteristic dynamic and structural properties as well as to enquire into how increasing temperature affects these properties. It has been shown that dynamic processes in different kinds of Haribo jelly are similar (this can be treated as a sign of their quality and authenticity) and that the fraction of confined water molecules is reduced with increasing temperature. Two groups of Vidal jelly have been identified. For the first one, the parameters (dipolar relaxation constants and correlation times) match those for Haribo jelly. For the second group including cherry jelly, considerable differences in the parameters characterizing their dynamic properties have been revealed.
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17
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Water Dynamics in Highly Concentrated Protein Systems-Insight from Nuclear Magnetic Resonance Relaxometry. Int J Mol Sci 2023; 24:ijms24044093. [PMID: 36835511 PMCID: PMC9963861 DOI: 10.3390/ijms24044093] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2022] [Revised: 02/07/2023] [Accepted: 02/10/2023] [Indexed: 02/22/2023] Open
Abstract
1H spin-lattice relaxation experiments have been performed for water-Bovine Serum Albumin (BSA) mixtures, including 20%wt and 40%wt of BSA. The experiments have been carried out in a frequency range encompassing three orders of magnitude, from 10 kHz to 10 MHz, versus temperature. The relaxation data have been thoroughly analyzed in terms of several relaxation models with the purpose of revealing the mechanisms of water motion. For this purpose, four relaxation models have been used: the data have been decomposed into relaxation contributions expressed in terms of Lorentzian spectral densities, then three-dimensional translation diffusion has been assumed, next two-dimensional surface diffusion has been considered, and eventually, a model of surface diffusion mediated by acts of adsorption to the surface has been employed. In this way, it has been demonstrated that the last concept is the most plausible. Parameters describing the dynamics in a quantitative manner have been determined and discussed.
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18
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Ortiz Restrepo SA, Adams A. Fast quantification of water content in glycols by compact 1H NMR spectroscopy. Talanta 2023; 253:123973. [PMID: 36206628 DOI: 10.1016/j.talanta.2022.123973] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Revised: 09/23/2022] [Accepted: 09/24/2022] [Indexed: 12/13/2022]
Abstract
Glycols are key chemicals for many applications in different fields of activities. Being highly hydroscopic, glycols contain usually water. The presence of water, even in tiny amounts, can affect their chemical and physical properties. Therefore, the accurate determination of water content is essential for any intended applications. In this context, a novel method using low-field Nuclear Magnetic Resonance (NMR) spectroscopy is introduced. The proposed approach offers a straightforward, fast, low-cost, and versatile solution for water quantification in glycols without the need for reagents or calibration data. It is demonstrated by quantifying the water concentration up to 11 wt% in aqueous ethylene glycol (EG) and triethylene glycol (TEG) mixtures with the help of lineshape analysis of the corresponding proton spectra. The limit of detection, achieved within 1 min of measuring time, was 0.05 wt% for water in EG and 0.15 wt% in TEG. The excellent agreement between the NMR results and those from the Karl-Fischer titration indicates that the proposed NMR-based approach has a great potential to be used as an alternative to the Karl-Fischer method. In addition, it is expected that the same methodology can be applied for water quantification in more complex glycolic solutions and other mixtures.
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Affiliation(s)
| | - Alina Adams
- Institut für Technische und Makromolekulare Chemie, RWTH Aachen University, Templergraben 55, Aachen, 52056, Germany.
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19
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Maillet B, Sidi-Boulenouar R, Coussot P. Dynamic NMR Relaxometry as a Simple Tool for Measuring Liquid Transfers and Characterizing Surface and Structure Evolution in Porous Media. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2022; 38:15009-15025. [PMID: 36468708 DOI: 10.1021/acs.langmuir.2c01918] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Porous media containing voids which can be filled with gas and/or liquids are ubiquitous in our everyday life: soils, wood, bricks, concrete, sponges, and textiles. It is of major interest to identify how a liquid, pushing another fluid or transporting particles, ions, or nutriments, can penetrate or be extracted from the porous medium. High-resolution X-ray microtomography, neutron imaging, and magnetic resonance imaging are techniques allowing us to obtain, in a nondestructive way, a view of the internal processes in nontransparent porous media. Here we review the possibilities of a simple though powerful technique which provides various direct quantitative information on the liquid distribution inside the porous structure and its variations over time due to fluid transport and/or phase changes. It relies on the analysis of the details of the NMR (nuclear magnetic resonance) relaxation of the proton spins of the liquid molecules and its evolution during some process such as the imbibition, drying, or phase change of the sample. This rather cheap technique then allows us to distinguish how the liquid is distributed in the different pore sizes or pore types and how this evolves over time; since the NMR relaxation time depends on the fraction of time spent by the molecule along the solid surface, this technique can also be used to determine the specific surface of some pore classes in the material. The principles of the technique and its contribution to the physical understanding of the processes are illustrated through examples: imbibition, drying or fluid transfers in a nanoporous silica glass, large pores dispersed in a fine polymeric porous matrix, a pile of cellulose fibers partially saturated with bound water, a softwood, and a simple porous inclusion in a cement paste. We thus show the efficiency of the technique to quantify the transfers with a good temporal resolution.
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Affiliation(s)
- Benjamin Maillet
- Laboratoire Navier (Ecole des Ponts Paris Tech-Université Gustave Eiffel-CNRS), 77420Champs-sur-Marne, France
| | - Rahima Sidi-Boulenouar
- Laboratoire Navier (Ecole des Ponts Paris Tech-Université Gustave Eiffel-CNRS), 77420Champs-sur-Marne, France
| | - Philippe Coussot
- Laboratoire Navier (Ecole des Ponts Paris Tech-Université Gustave Eiffel-CNRS), 77420Champs-sur-Marne, France
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20
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Gao T, Korb JP, Lukšič M, Mériguet G, Malikova N, Rollet AL. Ion influence on surface water dynamics and proton exchange at protein surfaces - A unified model for transverse and longitudinal NMR relaxation dispersion. J Mol Liq 2022; 367:120451. [PMID: 37790165 PMCID: PMC10544814 DOI: 10.1016/j.molliq.2022.120451] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Abstract
In all biologically relevant media, proteins interact in the presence of surrounding ions, and such interactions are water-mediated. Water molecules play a crucial role in the restructuring of proteins in solution and indeed in their biological activity. Surface water dynamics and proton exchange at protein surfaces is investigated here using NMR relaxometry, for two well-known globular proteins, lysozyme and bovine serum albumin, with particular attention to the role of surface ions. We present a unified model of surface water dynamics and proton exchange, accounting simultaneously for the observed longitudinal and transverse relaxation rates. The most notable effect of salt (0.1 M) concerns the slow surface water dynamics, related to rare water molecules embedded in energy wells on the protein surface. This response is protein-specific. On the other hand, the proton exchange time between labile protein-protons and water-protons at the protein surface seems to be very similar for the two proteins and is insensitive to the addition of salts at the concentration studied.
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Affiliation(s)
- Tadeja Gao
- Sorbonne Université/CNRS, Laboratoire Physico-Chimie des Électrolytes et Nano-Systèmes Interfaciaux (PHENIX), 4 place Jussieu, Paris, France
- Faculty of Chemistry and Chemical Technology, University of Ljubljana, Večna pot 113, Ljubljana SI-1000, Slovenia
| | - Jean-Pierre Korb
- Sorbonne Université/CNRS, Laboratoire Physico-Chimie des Électrolytes et Nano-Systèmes Interfaciaux (PHENIX), 4 place Jussieu, Paris, France
| | - Miha Lukšič
- Faculty of Chemistry and Chemical Technology, University of Ljubljana, Večna pot 113, Ljubljana SI-1000, Slovenia
| | - Guillaume Mériguet
- Sorbonne Université/CNRS, Laboratoire Physico-Chimie des Électrolytes et Nano-Systèmes Interfaciaux (PHENIX), 4 place Jussieu, Paris, France
| | - Natalie Malikova
- Sorbonne Université/CNRS, Laboratoire Physico-Chimie des Électrolytes et Nano-Systèmes Interfaciaux (PHENIX), 4 place Jussieu, Paris, France
| | - Anne-Laure Rollet
- Sorbonne Université/CNRS, Laboratoire Physico-Chimie des Électrolytes et Nano-Systèmes Interfaciaux (PHENIX), 4 place Jussieu, Paris, France
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21
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Gizatullin B, Mattea C, Shikhov I, Arns C, Stapf S. Modeling Molecular Interactions with Wetting and Non-Wetting Rock Surfaces by Combining Electron Paramagnetic Resonance and NMR Relaxometry. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2022; 38:11033-11053. [PMID: 36047994 DOI: 10.1021/acs.langmuir.2c01681] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Three types of natural rocks─Bentheimer and Berea sandstones, as well as Liège Chalk─have been aged by immersion in a bitumen solution for extended periods of time in two steps, changing the surface conditions from water-wet to oil-wet. NMR relaxation dispersion measurements were carried out on water and oil constituents, with saturated and aromatic molecules considered individually. In order to separate the different relaxation mechanisms discussed in the literature, 1H and 19F relaxation times were compared to 2H for fully deuterated liquids: while 2H relaxes predominantly by quadrupolar coupling, which is an intramolecular process, the remaining nuclei relax by dipolar coupling, which potentially consists of intra- and intermolecular contributions. The wettability change becomes evident in an increase of relaxation rates for oil and a corresponding decrease for water. However, this expected behavior dominates only for the spin-lattice relaxation rate R1 at very low field strengths and for the spin-spin relaxation rate R2, while high-field longitudinal relaxation shows a much weaker or even reverse trend. This is attributed in part to a change of radical concentration on the pore surface upon coverage of the native rock surface by bitumen as well as by the change of surface chemistry and roughness. EPR and DNP measurements quantify the change of volume vs surface radical concentration in the rocks, and an improved understanding of the role of relaxation via paramagnetic centers is obtained. By means of comparing different fluids and nuclei in combination with a defined wettability change of natural rocks, a refined model for molecular dynamics in conjunction with NMR relaxation dispersion is proposed.
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Affiliation(s)
- Bulat Gizatullin
- FG Technische Physik II/Polymerphysik, Technische Universität Ilmenau, D-98684 Ilmenau, Germany
| | - Carlos Mattea
- FG Technische Physik II/Polymerphysik, Technische Universität Ilmenau, D-98684 Ilmenau, Germany
| | - Igor Shikhov
- School of Minerals and Energy Resources Engineering, Univ. of New South Wales, Sydney, NSW 2052, Australia
| | - Christoph Arns
- School of Minerals and Energy Resources Engineering, Univ. of New South Wales, Sydney, NSW 2052, Australia
| | - Siegfried Stapf
- FG Technische Physik II/Polymerphysik, Technische Universität Ilmenau, D-98684 Ilmenau, Germany
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22
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Kruk D, Masiewicz E, Kołodziejski K, Markiewicz R, Jurga S. Relative Cation-Anion Diffusion in Alkyltriethylammonium-Based Ionic Liquids. Int J Mol Sci 2022; 23:ijms23115994. [PMID: 35682674 PMCID: PMC9181216 DOI: 10.3390/ijms23115994] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Revised: 05/11/2022] [Accepted: 05/14/2022] [Indexed: 02/04/2023] Open
Abstract
19F Nuclear Magnetic Resonance spin-lattice relaxation experiments have been performed for a series of ionic liquids including the same anion, bis(trifluoromethanesulfonyl)imide, and cations with alkyl chains of different lengths: triethylhexylammonium, triethyloctylammonium, decyltriethylammonium, dodecyltriethylammonium, decyltriethylammonium, and hexadecyltriethylammonium. The experiments have been carried out in a frequency range of 10 kHz to 10 MHz versus temperature. A thorough analysis of the relaxation data has led to the determination of the cation–anion as a relative translation diffusion coefficient. The diffusion coefficients have been compared with the corresponding cation–cation and anion–anion diffusion coefficients, revealing a correlation in the relative translation movement of the anion and the triethylhexylammonium, triethyloctylammonium, decyltriethylammonium, and dodecyltriethylammonium cations, whereas the relative translation diffusion between the anion and the cations with the longer alkyl chains, decyltriethylammonium and hexadecyltriethylammonium, remains rather uncorrelated (correlated to a much lesser extent).
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Affiliation(s)
- Danuta Kruk
- Department of Physics and Biophysics, University of Warmia & Mazury in Olsztyn, Oczapowskiego 4, 10-719 Olsztyn, Poland; (E.M.); (K.K.)
- Correspondence:
| | - Elżbieta Masiewicz
- Department of Physics and Biophysics, University of Warmia & Mazury in Olsztyn, Oczapowskiego 4, 10-719 Olsztyn, Poland; (E.M.); (K.K.)
| | - Karol Kołodziejski
- Department of Physics and Biophysics, University of Warmia & Mazury in Olsztyn, Oczapowskiego 4, 10-719 Olsztyn, Poland; (E.M.); (K.K.)
| | - Roksana Markiewicz
- NanoBioMedical Centre, Adam Mickiewicz University, Wszechnicy Piastowskiej 3, 61-614 Poznan, Poland; (R.M.); (S.J.)
| | - Stefan Jurga
- NanoBioMedical Centre, Adam Mickiewicz University, Wszechnicy Piastowskiej 3, 61-614 Poznan, Poland; (R.M.); (S.J.)
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23
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Camacho-Zarco AR, Schnapka V, Guseva S, Abyzov A, Adamski W, Milles S, Jensen MR, Zidek L, Salvi N, Blackledge M. NMR Provides Unique Insight into the Functional Dynamics and Interactions of Intrinsically Disordered Proteins. Chem Rev 2022; 122:9331-9356. [PMID: 35446534 PMCID: PMC9136928 DOI: 10.1021/acs.chemrev.1c01023] [Citation(s) in RCA: 45] [Impact Index Per Article: 22.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
![]()
Intrinsically disordered
proteins are ubiquitous throughout all
known proteomes, playing essential roles in all aspects of cellular
and extracellular biochemistry. To understand their function, it is
necessary to determine their structural and dynamic behavior and to
describe the physical chemistry of their interaction trajectories.
Nuclear magnetic resonance is perfectly adapted to this task, providing
ensemble averaged structural and dynamic parameters that report on
each assigned resonance in the molecule, unveiling otherwise inaccessible
insight into the reaction kinetics and thermodynamics that are essential
for function. In this review, we describe recent applications of NMR-based
approaches to understanding the conformational energy landscape, the
nature and time scales of local and long-range dynamics and how they
depend on the environment, even in the cell. Finally, we illustrate
the ability of NMR to uncover the mechanistic basis of functional
disordered molecular assemblies that are important for human health.
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Affiliation(s)
| | - Vincent Schnapka
- Université Grenoble Alpes, CEA, CNRS, IBS, 38000 Grenoble, France
| | - Serafima Guseva
- Université Grenoble Alpes, CEA, CNRS, IBS, 38000 Grenoble, France
| | - Anton Abyzov
- Université Grenoble Alpes, CEA, CNRS, IBS, 38000 Grenoble, France
| | - Wiktor Adamski
- Université Grenoble Alpes, CEA, CNRS, IBS, 38000 Grenoble, France
| | - Sigrid Milles
- Université Grenoble Alpes, CEA, CNRS, IBS, 38000 Grenoble, France
| | | | - Lukas Zidek
- National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, 82500 Brno, Czech Republic.,Central European Institute of Technology, Masaryk University, Kamenice 5, 82500 Brno, Czech Republic
| | - Nicola Salvi
- Université Grenoble Alpes, CEA, CNRS, IBS, 38000 Grenoble, France
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24
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Damodaran K. Recent advances in NMR spectroscopy of ionic liquids. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2022; 129:1-27. [PMID: 35292132 DOI: 10.1016/j.pnmrs.2021.12.001] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2021] [Revised: 12/17/2021] [Accepted: 12/28/2021] [Indexed: 06/14/2023]
Abstract
This review presents recent developments in the application of NMR spectroscopic techniques in the study of ionic liquids. NMR has been the primary tool not only for the structural characterization of ionic liquids, but also for the study of dynamics. The presence of a host of NMR active nuclei in ionic liquids permits widespread use of multinuclear NMR experiments. Chemical shifts and multinuclear coupling constants are used routinely for the structure elucidation of ionic liquids and of products formed by their covalent interactions with other materials. Also, the availability of a multitude of NMR techniques has facilitated the study of dynamical processes in them. These include the use of NOESY to study inter-ionic interactions, pulsed-field gradient techniques for probing transport properties, and relaxation measurements to elucidate rotational dynamics. This review will focus on the application of each of these techniques to investigate ionic liquids.
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Affiliation(s)
- Krishnan Damodaran
- Department of Chemistry, University of Pittsburgh, Pittsburgh, PA 15260, United States.
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25
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Li Y, Wang GJ. How to produce confidence intervals instead of confidence tricks: Representative sampling for molecular simulations of fluid self-diffusion under nanoscale confinement. J Chem Phys 2022; 156:114113. [DOI: 10.1063/5.0081707] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Ergodicity (or at least the tantalizing promise of it) is a core animating principle of molecular-dynamics (MD) simulations: Put simply, sample for long enough (in time), and you will make representative visits to states of a system all throughout phase space, consistent with the desired statistical ensemble. However, one is not guaranteed a priori that the chosen window of sampling in a production run is sufficiently long to avoid problematically non-ergodic observations; one is also not guaranteed that successive measurements of an observable are statistically independent of each other. In this paper, we investigate several particularly striking and troublesome examples of statistical correlations in MD simulations of nanoconfined fluids, which have profound implications on the quantification of uncertainty for transport phenomena in these systems. In particular, we show that these correlations can lead to confidence intervals on the fluid self-diffusion coefficient that are dramatically overconfident and estimates of this transport quantity that are simply inaccurate. We propose a simple approach—based on the thermally accelerated decorrelation of fluid positions and momenta—that ameliorates these issues and improves our confidence in MD measurements of nanoconfined fluid transport properties. We demonstrate that the formation of faithful confidence intervals for measurements of self-diffusion under nanoscale confinement typically requires at least 20 statistically independent samples, and potentially more depending on the sampling technique used.
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Affiliation(s)
- Yuanhao Li
- Department of Civil and Environmental Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, USA
| | - Gerald J. Wang
- Department of Civil and Environmental Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, USA
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26
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Kruk D, Masiewicz E, Budny J, Stankiewicz A, Lotarska S, Oztop M, Wieczorek Z. Diffusion in oils versus their viscosity – Insight from Nuclear Magnetic Resonance relaxometry. J FOOD ENG 2022. [DOI: 10.1016/j.jfoodeng.2021.110848] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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27
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Kruk D, Masiewicz E, Budny J, Kolodziejski K, Zulewska J, Wieczorek Z. Relationship between macroscopic properties of honey and molecular dynamics – temperature effects. J FOOD ENG 2022. [DOI: 10.1016/j.jfoodeng.2021.110782] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Relationship between Translational and Rotational Dynamics of Alkyltriethylammonium-Based Ionic Liquids. Int J Mol Sci 2022; 23:ijms23031688. [PMID: 35163609 PMCID: PMC8836145 DOI: 10.3390/ijms23031688] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2021] [Revised: 01/22/2022] [Accepted: 01/26/2022] [Indexed: 02/05/2023] Open
Abstract
1H spin-lattice relaxation experiments have been performed for a series of ionic liquids including bis(trifluoromethanesulfonyl)imide anion and cations of a varying alkyl chain length: triethylhexylammonium, triethyloctylammonium, decyltriethylammonium, dodecyltriethylammonium, triethyltetradecylammonium, and hexadecyltriethylammonium. The relaxation studies were carried out in abroad frequency range covering three orders of magnitude, from 10 kHz to 10 MHz, versus temperature. On the basis of a thorough, quantitative analysis of this reach data set, parameters characterizing the relative, cation-cation, translation diffusion (relative diffusion coefficients and translational correlation times), and rotational motion of the cation (rotational correlation times) were determined. Relationships between these quantities and their dependence on the alkyl chain length were discussed in comparison to analogous properties of molecular liquids. It was shown, among other findings, that the ratio between the translational and rotational correlation times is smaller than for molecular liquids and considerably dependent on temperature. Moreover, a comparison of relative and self-diffusion coefficients indicate correlated translational dynamics of the cations.
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Yang K, Sadeghi Pouya E, Liu L, Li M, Yang X, Robinson N, May EF, Johns ML. Low‐Field NMR Relaxation Analysis of High‐Pressure Ethane Adsorption in Mesoporous Silicas. Chemphyschem 2022; 23:e202100794. [DOI: 10.1002/cphc.202100794] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2021] [Revised: 12/20/2021] [Indexed: 12/11/2022]
Affiliation(s)
- Kaishuo Yang
- Department of Chemical Engineering The University of Western Australia 35 Stirling Highway (M050) Perth WA 6009 Australia
| | - Ehsan Sadeghi Pouya
- Department of Chemical Engineering The University of Western Australia 35 Stirling Highway (M050) Perth WA 6009 Australia
| | - Libin Liu
- Department of Chemical Engineering The University of Western Australia 35 Stirling Highway (M050) Perth WA 6009 Australia
| | - Ming Li
- Department of Chemical Engineering The University of Western Australia 35 Stirling Highway (M050) Perth WA 6009 Australia
| | - Xiaoxian Yang
- Department of Chemical Engineering The University of Western Australia 35 Stirling Highway (M050) Perth WA 6009 Australia
| | - Neil Robinson
- Department of Chemical Engineering The University of Western Australia 35 Stirling Highway (M050) Perth WA 6009 Australia
| | - Eric F. May
- Department of Chemical Engineering The University of Western Australia 35 Stirling Highway (M050) Perth WA 6009 Australia
| | - Michael L. Johns
- Department of Chemical Engineering The University of Western Australia 35 Stirling Highway (M050) Perth WA 6009 Australia
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Silletta EV, Velasco MI, Monti GA, Acosta RH. Comparison of experimental times in T 1-D and D-T 2 correlation experiments in single-sided NMR. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2022; 334:107112. [PMID: 34864390 DOI: 10.1016/j.jmr.2021.107112] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2021] [Revised: 11/16/2021] [Accepted: 11/22/2021] [Indexed: 06/13/2023]
Abstract
Diffusion-relaxation correlation experiments in nuclear magnetic resonance are a powerful technique for the characterization of fluid dynamics in confined geometries or soft matter, in which relaxation may be either spin-spin (T2) or spin-lattice (T1). The general approach is to acquire a set of bidimensional data in which diffusion is codified by the evolution of the magnetization with either Hahn or stimulated echoes (STE) in the presence of a constant magnetic field gradient. While T2 is codified by a Carr-Purcell-Meiboom-Gil (CPMG) sequence, T1 is either encoded by saturation or inversion-recovery methods. In this work, we analyse the measurement time of diffusion-relaxation times in single-sided NMR and show that T1-D acquisition is always shorter than D-T2. Depending on the hardware characteristics, this time reduction can be up to an order of magnitude. We present analytical calculations and examples in model porous media saturated with water and in a dairy product.
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Affiliation(s)
- Emilia V Silletta
- Universidad Nacional de Córdoba, Facultad de Matemática, Astronomía, Física y Computación, Córdoba, Argentina; CONICET, Instituto de Física Enrique Gaviola (IFEG), Córdoba, Argentina
| | - Manuel I Velasco
- Universidad Nacional de Córdoba, Facultad de Matemática, Astronomía, Física y Computación, Córdoba, Argentina; CONICET, Instituto de Física Enrique Gaviola (IFEG), Córdoba, Argentina
| | - Gustavo A Monti
- Universidad Nacional de Córdoba, Facultad de Matemática, Astronomía, Física y Computación, Córdoba, Argentina; CONICET, Instituto de Física Enrique Gaviola (IFEG), Córdoba, Argentina
| | - Rodolfo H Acosta
- Universidad Nacional de Córdoba, Facultad de Matemática, Astronomía, Física y Computación, Córdoba, Argentina; CONICET, Instituto de Física Enrique Gaviola (IFEG), Córdoba, Argentina.
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Robinson N, May EF, Johns ML. Low-Field Functional Group Resolved Nuclear Spin Relaxation in Mesoporous Silica. ACS APPLIED MATERIALS & INTERFACES 2021; 13:54476-54485. [PMID: 34743514 DOI: 10.1021/acsami.1c13934] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Solid-fluid interactions underpin the efficacy of functional porous materials across a diverse array of chemical reaction and separation processes. However, detailed characterization of interfacial phenomena within such systems is hampered by their optically opaque nature. Motivated by the need to bridge this capability gap, we report low-magnetic-field two-dimensional (2D) 1H nuclear spin relaxation measurements as a noninvasive probe of adsorbate identity and interfacial dynamics, exploring the relaxation characteristics exhibited by liquid hydrocarbon adsorbates confined to a model mesoporous silica. For the first time, we demonstrate the capacity of this approach in distinguishing functional group-specific relaxation phenomena across a diverse range of alcohols and carboxylic acids employed as solvents, reagents, and liquid hydrogen carriers, with distinct relaxation responses assigned to the alkyl and hydroxyl moieties of each confined liquid. Uniquely, this relaxation behavior is shown to correlate with adsorbate acidity, with the observed relationship rationalized on the basis of surface-adsorbate proton-exchange dynamics. Our results demonstrate that nuclear spin relaxation provides a molecular-level perspective on sorbent/sorbate interactions, motivating the exploration of such measurements as a unique probe of adsorbate identity within optically opaque porous media.
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Affiliation(s)
- Neil Robinson
- Department of Chemical Engineering, University of Western Australia, 35 Stirling Highway, Perth, WA 6009, Australia
| | - Eric F May
- Department of Chemical Engineering, University of Western Australia, 35 Stirling Highway, Perth, WA 6009, Australia
| | - Michael L Johns
- Department of Chemical Engineering, University of Western Australia, 35 Stirling Highway, Perth, WA 6009, Australia
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Robinson N, Nasharuddin R, Luo G, Fourie A, Fridjonsson EO, Johns ML. Pore Structure Evolution of Cemented Paste Backfill Observed with Two-Dimensional NMR Relaxation Correlation Measurements. Ind Eng Chem Res 2021. [DOI: 10.1021/acs.iecr.1c01819] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Neil Robinson
- Department of Chemical Engineering, The University of Western Australia, 35 Stirling Highway, Perth, Western Australia 6009, Australia
| | - Razyq Nasharuddin
- Department of Chemical Engineering, The University of Western Australia, 35 Stirling Highway, Perth, Western Australia 6009, Australia
| | - Ganhua Luo
- Department of Civil, Environment and Mining Engineering, The University of Western Australia, 35 Stirling Highway, Perth, Western Australia 6009, Australia
| | - Andy Fourie
- Department of Civil, Environment and Mining Engineering, The University of Western Australia, 35 Stirling Highway, Perth, Western Australia 6009, Australia
| | - Einar O. Fridjonsson
- Department of Chemical Engineering, The University of Western Australia, 35 Stirling Highway, Perth, Western Australia 6009, Australia
| | - Michael L. Johns
- Department of Chemical Engineering, The University of Western Australia, 35 Stirling Highway, Perth, Western Australia 6009, Australia
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Kruk D, Masiewicz E, Lotarska S, Markiewicz R, Jurga S. Correlated Dynamics in Ionic Liquids by Means of NMR Relaxometry: Butyltriethylammonium bis(Trifluoromethanesulfonyl)imide as an Example. Int J Mol Sci 2021; 22:ijms22179117. [PMID: 34502026 PMCID: PMC8431572 DOI: 10.3390/ijms22179117] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Revised: 08/13/2021] [Accepted: 08/16/2021] [Indexed: 11/27/2022] Open
Abstract
1H and 19F spin-lattice relaxation experiments have been performed for butyltriethylammonium bis(trifluoromethanesulfonyl)imide in the temperature range from 258 to 298 K and the frequency range from 10 kHz to 10 MHz. The results have thoroughly been analysed in terms of a relaxation model taking into account relaxation pathways associated with 1H–1H, 19F–19F and 1H–19F dipole–dipole interactions, rendering relative translational diffusion coefficients for the pairs of ions: cation–cation, anion–anion and cation–anion, as well as the rotational correlation time of the cation. The relevance of the 1H–19F relaxation contribution to the 1H and 19F relaxation has been demonstrated. A comparison of the diffusion coefficients has revealed correlation effects in the relative cation–anion translational movement. It has also turned out that the translational movement of the anions is faster than of cations, especially at high temperatures. Moreover, the relative cation–cation diffusion coefficients have been compared with self-diffusion coefficients obtained by means of NMR (Nuclear Magnetic Resonance) gradient diffusometry. The comparison indicates correlation effects in the relative cation–cation translational dynamics—the effects become more pronounced with decreasing temperature.
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Affiliation(s)
- Danuta Kruk
- Department of Physics and Biophysics, University of Warmia and Mazury in Olsztyn, Oczapowskiego 4, 10-719 Olsztyn, Poland; (E.M.); (S.L.)
- NanoBioMedical Centre, Adam Mickiewicz University, Wszechnicy Piastowskiej 3, 61-614 Poznan, Poland; (R.M.); (S.J.)
- Correspondence:
| | - Elzbieta Masiewicz
- Department of Physics and Biophysics, University of Warmia and Mazury in Olsztyn, Oczapowskiego 4, 10-719 Olsztyn, Poland; (E.M.); (S.L.)
| | - Sylwia Lotarska
- Department of Physics and Biophysics, University of Warmia and Mazury in Olsztyn, Oczapowskiego 4, 10-719 Olsztyn, Poland; (E.M.); (S.L.)
| | - Roksana Markiewicz
- NanoBioMedical Centre, Adam Mickiewicz University, Wszechnicy Piastowskiej 3, 61-614 Poznan, Poland; (R.M.); (S.J.)
| | - Stefan Jurga
- NanoBioMedical Centre, Adam Mickiewicz University, Wszechnicy Piastowskiej 3, 61-614 Poznan, Poland; (R.M.); (S.J.)
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Janc T, Korb JP, Lukšič M, Vlachy V, Bryant RG, Mériguet G, Malikova N, Rollet AL. Multiscale Water Dynamics on Protein Surfaces: Protein-Specific Response to Surface Ions. J Phys Chem B 2021; 125:8673-8681. [PMID: 34342225 DOI: 10.1021/acs.jpcb.1c02513] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Proteins function in crowded aqueous environments, interacting with a diverse range of compounds, and among them, dissolved ions. These interactions are water-mediated. In the present study, we combine field-dependent NMR relaxation (NMRD) and theory to probe water dynamics on the surface of proteins in concentrated aqueous solutions of hen egg-white lysozyme (LZM) and bovine serum albumin (BSA). The experiments reveal that the presence of salts (NaCl or NaI) leads to an opposite ion-specific response for the two proteins: an addition of salt to LZM solutions increases water relaxation rates with respect to the salt-free case, while for BSA solutions, a decrease is observed. The magnitude of the change depends on the ion identity. The developed model accounts for the non-Lorentzian shape of the NMRD profiles and reproduces the experimental data over four decades in Larmor frequency (10 kHz to 110 MHz). It is applicable up to high protein concentrations. The model incorporates the observed ion-specific effects via changes in the protein surface roughness, represented by the surface fractal dimension, and the accompanying changes in the surface water residence times. The response is protein-specific, linked to geometrical aspects of the individual protein surfaces, and goes beyond protein-independent Hofmeister-style ordering of ions.
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Affiliation(s)
- Tadeja Janc
- Laboratoire PHENIX, CNRS, Sorbonne Université, Paris 75252, France.,Faculty of Chemistry and Chemical Technology, University of Ljubljana, 1000 Ljubljana, Slovenia
| | - Jean-Pierre Korb
- Laboratoire PHENIX, CNRS, Sorbonne Université, Paris 75252, France
| | - Miha Lukšič
- Faculty of Chemistry and Chemical Technology, University of Ljubljana, 1000 Ljubljana, Slovenia
| | - Vojko Vlachy
- Faculty of Chemistry and Chemical Technology, University of Ljubljana, 1000 Ljubljana, Slovenia
| | - Robert G Bryant
- Chemistry Department, University of Virginia, Charlottesville, Virginia 22904, United States
| | | | - Natalie Malikova
- Laboratoire PHENIX, CNRS, Sorbonne Université, Paris 75252, France
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Umeobi HI, Li Q, Xu L, Tan Y, Onyekwena CC. Flow and structural analysis of sedimentary rocks by core flooding and nuclear magnetic resonance: A review. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2021; 92:071501. [PMID: 34340457 DOI: 10.1063/5.0036673] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2020] [Accepted: 06/28/2021] [Indexed: 06/13/2023]
Abstract
Fluid flow analyses and investigations of associated structural variations in rock formations are important due to the complex nature of rocks and the high heterogeneity that exists within fluid-rock systems. Variations in fluid-rock parameters need to be ascertained over time with continuous or cyclic fluid injection into subsurface rocks for enhanced oil recovery and other subsurface applications. This Review introduces the use of the core flooding-nuclear magnetic resonance (NMR) technique for analysis of combined fluid flow and structural features in subsurface fluid-rock systems. It presents a summary of the results realized by various researchers in this area of study. The influence of several conditions, such as geochemical interactions, wettability, inherent heterogeneities in fluid flow and rock properties, and variations in these parameters, is analyzed. We investigate NMR measurements for both single fluid phase saturation and multiphase saturation. Additionally, the processes for identifying and distinguishing different fluid phases are emphasized in this study. Furthermore, capillary pressure and its influence on fluid-rock parameters are also discussed. Although this study emphasizes subsurface rocks and enhanced oil recovery, the experimental combination is also extended to core flooding using several other injection fluids and porous media. Finally, research gaps pertaining to core flooding-NMR systems regarding fluid flow, structural changes, fluid-rock systems, and instrumentation are pointed out. Transient flow analysis involving structural variations is suggested for future work in this regard.
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Affiliation(s)
- Happiness Ijeoma Umeobi
- State Key Laboratory of Geomechanics and Geotechnical Engineering, Institute of Rock and Soil Mechanics, Chinese Academy of Sciences, Wuhan 430071, China
| | - Qi Li
- State Key Laboratory of Geomechanics and Geotechnical Engineering, Institute of Rock and Soil Mechanics, Chinese Academy of Sciences, Wuhan 430071, China
| | - Liang Xu
- State Key Laboratory of Geomechanics and Geotechnical Engineering, Institute of Rock and Soil Mechanics, Chinese Academy of Sciences, Wuhan 430071, China
| | - Yongsheng Tan
- State Key Laboratory of Geomechanics and Geotechnical Engineering, Institute of Rock and Soil Mechanics, Chinese Academy of Sciences, Wuhan 430071, China
| | - Chikezie Chimere Onyekwena
- State Key Laboratory of Geomechanics and Geotechnical Engineering, Institute of Rock and Soil Mechanics, Chinese Academy of Sciences, Wuhan 430071, China
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Fast-field-cycling ultralow-field nuclear magnetic relaxation dispersion. Nat Commun 2021; 12:4041. [PMID: 34193862 PMCID: PMC8245537 DOI: 10.1038/s41467-021-24248-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Accepted: 06/07/2021] [Indexed: 12/03/2022] Open
Abstract
Optically pumped magnetometers (OPMs) based on alkali-atom vapors are ultra-sensitive devices for dc and low-frequency ac magnetic measurements. Here, in combination with fast-field-cycling hardware and high-resolution spectroscopic detection, we demonstrate applicability of OPMs in quantifying nuclear magnetic relaxation phenomena. Relaxation rate dispersion across the nT to mT field range enables quantitative investigation of extremely slow molecular motion correlations in the liquid state, with time constants > 1 ms, and insight into the corresponding relaxation mechanisms. The 10-20 fT/\documentclass[12pt]{minimal}
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\begin{document}$$\sqrt{{\rm{H}}}{\rm{z}}$$\end{document}Hz sensitivity of an OPM between 10 Hz and 5.5 kHz 1H Larmor frequency suffices to detect magnetic resonance signals from ~ 0.1 mL liquid volumes imbibed in simple mesoporous materials, or inside metal tubing, following nuclear spin prepolarization adjacent to the OPM. High-resolution spectroscopic detection can resolve inter-nucleus spin-spin couplings, further widening the scope of application to chemical systems. Expected limits of the technique regarding measurement of relaxation rates above 100 s−1 are discussed. Nuclear spin polarization and relaxation can be studied using nuclear magnetic resonance (NMR). Here the authors demonstrate a combination of fast-field cycling and optical magnetometry techniques, to realize a NMR sensor that operates in the region of very low frequency and high relaxation rate.
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Wang Z, Pisano S, Ghini V, Kadeřávek P, Zachrdla M, Pelupessy P, Kazmierczak M, Marquardsen T, Tyburn JM, Bouvignies G, Parigi G, Luchinat C, Ferrage F. Detection of Metabolite-Protein Interactions in Complex Biological Samples by High-Resolution Relaxometry: Toward Interactomics by NMR. J Am Chem Soc 2021; 143:9393-9404. [PMID: 34133154 DOI: 10.1021/jacs.1c01388] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Metabolomics, the systematic investigation of metabolites in biological fluids, cells, or tissues, reveals essential information about metabolism and diseases. Metabolites have functional roles in a myriad of biological processes, as substrates and products of enzymatic reactions but also as cofactors and regulators of large numbers of biochemical mechanisms. These functions involve interactions of metabolites with macromolecules. Yet, methods to systematically investigate these interactions are still scarce to date. In particular, there is a need for techniques suited to identify and characterize weak metabolite-macromolecule interactions directly in complex media such as biological fluids. Here, we introduce a method to investigate weak interactions between metabolites and macromolecules in biological fluids. Our approach is based on high-resolution NMR relaxometry and does not require any invasive procedure or separation step. We show that we can detect interactions between small and large molecules in human blood serum and quantify the size of the complex. Our work opens the way for investigations of metabolite (or other small molecules)-protein interactions in biological fluids for interactomics or pharmaceutical applications.
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Affiliation(s)
- Ziqing Wang
- Laboratoire des Biomolécules, LBM, Département de chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France
| | - Simone Pisano
- Laboratoire des Biomolécules, LBM, Département de chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France
| | - Veronica Ghini
- Consorzio Interuniversitario Risonanze Magnetiche Metallo Proteine (CIRMMP), via Sacconi 6, Sesto Fiorentino, 50019 Italy
| | - Pavel Kadeřávek
- Laboratoire des Biomolécules, LBM, Département de chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France
| | - Milan Zachrdla
- Laboratoire des Biomolécules, LBM, Département de chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France
| | - Philippe Pelupessy
- Laboratoire des Biomolécules, LBM, Département de chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France
| | - Morgan Kazmierczak
- Laboratoire des Biomolécules, LBM, Département de chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France
| | | | - Jean-Max Tyburn
- Bruker BioSpin, 34 rue de l'Industrie BP 10002, 67166 Cedex Wissembourg, France
| | - Guillaume Bouvignies
- Laboratoire des Biomolécules, LBM, Département de chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France
| | - Giacomo Parigi
- Consorzio Interuniversitario Risonanze Magnetiche Metallo Proteine (CIRMMP), via Sacconi 6, Sesto Fiorentino, 50019 Italy
- Magnetic Resonance Center (CERM), University of Florence, via Sacconi 6, Sesto Fiorentino 50019, Italy
- Department of Chemistry "Ugo Schiff", University of Florence, via della Lastruccia 3, Sesto Fiorentino 50019, Italy
| | - Claudio Luchinat
- Consorzio Interuniversitario Risonanze Magnetiche Metallo Proteine (CIRMMP), via Sacconi 6, Sesto Fiorentino, 50019 Italy
- Magnetic Resonance Center (CERM), University of Florence, via Sacconi 6, Sesto Fiorentino 50019, Italy
- Department of Chemistry "Ugo Schiff", University of Florence, via della Lastruccia 3, Sesto Fiorentino 50019, Italy
| | - Fabien Ferrage
- Laboratoire des Biomolécules, LBM, Département de chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France
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38
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Water and Ion Dynamics in Confined Media: A Multi-Scale Study of the Clay/Water Interface. COLLOIDS AND INTERFACES 2021. [DOI: 10.3390/colloids5020034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
This review details a large panel of experimental studies (Inelastic Neutron Scattering, Quasi-Elastic Neutron Scattering, Nuclear Magnetic Resonance relaxometry, Pulsed-Gradient Spin-Echo attenuation, Nuclear Magnetic Resonance Imaging, macroscopic diffusion experiments) used recently to probe, over a large distribution of characteristic times (from pico-second up to days), the dynamical properties of water molecules and neutralizing cations diffusing within clay/water interfacial media. The purpose of this review is not to describe these various experimental methods in detail but, rather, to investigate the specific dynamical information obtained by each of them concerning these clay/water interfacial media. In addition, this review also illustrates the various numerical methods (quantum Density Functional Theory, classical Molecular Dynamics, Brownian Dynamics, macroscopic differential equations) used to interpret these various experimental data by analyzing the corresponding multi-scale dynamical processes. The purpose of this multi-scale study is to perform a bottom-up analysis of the dynamical properties of confined ions and water molecules, by using complementary experimental and numerical studies covering a broad range of diffusion times (between pico-seconds up to days) and corresponding diffusion lengths (between Angstroms and centimeters). In the context of such a bottom-up approach, the numerical modeling of the dynamical properties of the diffusing probes is based on experimental or numerical investigations performed on a smaller scale, thus avoiding the use of empirical or fitted parameters.
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Bödenler M, Maier O, Stollberger R, Broche LM, Ross PJ, MacLeod M, Scharfetter H. Joint multi-field T 1 quantification for fast field-cycling MRI. Magn Reson Med 2021; 86:2049-2063. [PMID: 34110028 PMCID: PMC8362152 DOI: 10.1002/mrm.28857] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2021] [Revised: 04/23/2021] [Accepted: 05/06/2021] [Indexed: 12/13/2022]
Abstract
Purpose Recent developments in hardware design enable the use of fast field‐cycling (FFC) techniques in MRI to exploit the different relaxation rates at very low field strength, achieving novel contrast. The method opens new avenues for in vivo characterizations of pathologies but at the expense of longer acquisition times. To mitigate this, we propose a model‐based reconstruction method that fully exploits the high information redundancy offered by FFC methods. Methods The proposed model‐based approach uses joint spatial information from all fields by means of a Frobenius ‐ total generalized variation regularization. The algorithm was tested on brain stroke images, both simulated and acquired from FFC patients scans using an FFC spin echo sequences. The results are compared to three non‐linear least squares fits with progressively increasing complexity. Results The proposed method shows excellent abilities to remove noise while maintaining sharp image features with large signal‐to‐noise ratio gains at low‐field images, clearly outperforming the reference approach. Especially patient data show huge improvements in visual appearance over all fields. Conclusion The proposed reconstruction technique largely improves FFC image quality, further pushing this new technology toward clinical standards.
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Affiliation(s)
- Markus Bödenler
- Institute of Medical EngineeringGraz University of TechnologyGrazAustria
- Institute of eHealthUniversity of Applied Sciences FH JOANNEUMGrazAustria
| | - Oliver Maier
- Institute of Medical EngineeringGraz University of TechnologyGrazAustria
| | - Rudolf Stollberger
- Institute of Medical EngineeringGraz University of TechnologyGrazAustria
- BioTechMed‐GrazGrazAustria
| | - Lionel M. Broche
- Aberdeen Biomedical Imaging CentreUniversity of AberdeenForesterhill, AberdeenUK
| | - P. James Ross
- Aberdeen Biomedical Imaging CentreUniversity of AberdeenForesterhill, AberdeenUK
| | - Mary‐Joan MacLeod
- Institute of Medical SciencesUniversity of AberdeenForesterhill, AberdeenUK
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Gizatullin B, Gafurov M, Murzakhanov F, Vakhin A, Mattea C, Stapf S. Molecular Dynamics and Proton Hyperpolarization via Synthetic and Crude Oil Porphyrin Complexes in Solid and Solution States. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2021; 37:6783-6791. [PMID: 34041909 DOI: 10.1021/acs.langmuir.1c00882] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The use of vanadyl porphyrins either in synthetic compounds or naturally occurring in asphaltenes is investigated as a source of proton hyperpolarization via dynamic nuclear polarization (DNP) in nuclear magnetic resonance (NMR) experiments. The features of dynamics and location of the vanadyl VO2+ complex in aggregates within the oil asphaltene molecules are studied by means of DNP, electron paramagnetic resonance (EPR), and NMR field cycling relaxometry. Both the solid effect and Overhauser DNP were observed for the asphaltene solution in benzene, as well as in the solution and solid states for synthetic compounds. By comparison with a solution of synthetic vanadyl porphyrins, it is shown that vanadyl porphyrins in asphaltene aggregates are localized outside of the interface of the asphaltene aggregates and more exposed to the maltene molecules than "free" carbon-centered radicals associated with the core of asphaltene molecules. The perceptible contribution of scalar interaction is observed in solutions for both synthetic and asphaltene vanadyl porphyrins.
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Affiliation(s)
- Bulat Gizatullin
- Institute of Physics, Technische Universität Ilmenau, Ilmenau 98693, Germany
| | - Marat Gafurov
- Kazan Federal University, Kremlevskaya, 18, Kazan 420008, Russia
| | | | - Alexey Vakhin
- Kazan Federal University, Kremlevskaya, 18, Kazan 420008, Russia
| | - Carlos Mattea
- Institute of Physics, Technische Universität Ilmenau, Ilmenau 98693, Germany
| | - Siegfried Stapf
- Institute of Physics, Technische Universität Ilmenau, Ilmenau 98693, Germany
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Screening Metal-Organic Frameworks for Separation of Binary Solvent Mixtures by Compact NMR Relaxometry. Molecules 2021; 26:molecules26123481. [PMID: 34201035 PMCID: PMC8228364 DOI: 10.3390/molecules26123481] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Revised: 06/04/2021] [Accepted: 06/05/2021] [Indexed: 01/18/2023] Open
Abstract
Metal–organic frameworks (MOFs) have great potential as an efficient alternative to current separation and purification procedures of a large variety of solvent mixtures—a critical process in many applications. Due to the huge number of existing MOFs, it is of key importance to identify high-throughput analytical tools, which can be used for their screening and performance ranking. In this context, the present work introduces a simple, fast, and inexpensive approach by compact low-field proton nuclear magnetic resonance (NMR) relaxometry to investigate the efficiency of MOF materials for the separation of a binary solvent mixture. The mass proportions of two solvents within a particular solvent mixture can be quantified before and after separation with the help of a priori established correlation curves relating the effective transverse relaxation times T2eff and the mass proportions of the two solvents. The new method is applied to test the separation efficiency of powdered UiO-66(Zr) for various solvent mixtures, including linear and cyclic alkanes and benzene derivate, under static conditions at room temperature. Its reliability is demonstrated by comparison with results from 1H liquid-state NMR spectroscopy.
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Parigi G, Ravera E, Fragai M, Luchinat C. Unveiling protein dynamics in solution with field-cycling NMR relaxometry. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2021; 124-125:85-98. [PMID: 34479712 DOI: 10.1016/j.pnmrs.2021.05.001] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2021] [Revised: 05/04/2021] [Accepted: 05/04/2021] [Indexed: 06/13/2023]
Abstract
Field-cycling NMR relaxometry is a well-established technique that can give information on molecular structure and dynamics of biological systems. It provides the nuclear relaxation rates as a function of the applied magnetic field, starting from fields as low as ~ 10-4 T up to about 1-3 T. The profiles so collected, called nuclear magnetic relaxation dispersion (NMRD) profiles, can be extended to include the relaxation rates at the largest fields achievable with high resolution NMR spectrometers. By exploiting this wide range of frequencies, the NMRD profiles can provide information on motions occurring on time scales from 10-6 to 10-9 s. 1H NMRD measurements have proved very useful also for the characterization of paramagnetic proteins, because they can help characterise a number of parameters including the number, distance and residence time of water molecules coordinated to the paramagnetic center, the reorientation correlation times and the electron spin relaxation time, and the electronic structure at the metal site.
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Affiliation(s)
- Giacomo Parigi
- Magnetic Resonance Center (CERM) University of Florence, via Sacconi 6, Sesto Fiorentino, Italy; Department of Chemistry, "Ugo Schiff", University of Florence, via della Lastruccia 3, Sesto Fiorentino, Italy; Consorzio Interuniversitario Risonanze Magnetiche di Metalloproteine (CIRMMP), via Sacconi 6, Sesto Fiorentino, Italy.
| | - Enrico Ravera
- Magnetic Resonance Center (CERM) University of Florence, via Sacconi 6, Sesto Fiorentino, Italy; Department of Chemistry, "Ugo Schiff", University of Florence, via della Lastruccia 3, Sesto Fiorentino, Italy; Consorzio Interuniversitario Risonanze Magnetiche di Metalloproteine (CIRMMP), via Sacconi 6, Sesto Fiorentino, Italy
| | - Marco Fragai
- Magnetic Resonance Center (CERM) University of Florence, via Sacconi 6, Sesto Fiorentino, Italy; Department of Chemistry, "Ugo Schiff", University of Florence, via della Lastruccia 3, Sesto Fiorentino, Italy; Consorzio Interuniversitario Risonanze Magnetiche di Metalloproteine (CIRMMP), via Sacconi 6, Sesto Fiorentino, Italy
| | - Claudio Luchinat
- Magnetic Resonance Center (CERM) University of Florence, via Sacconi 6, Sesto Fiorentino, Italy; Department of Chemistry, "Ugo Schiff", University of Florence, via della Lastruccia 3, Sesto Fiorentino, Italy; Consorzio Interuniversitario Risonanze Magnetiche di Metalloproteine (CIRMMP), via Sacconi 6, Sesto Fiorentino, Italy
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43
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Kruk D, Florek – Wojciechowska M, Masiewicz E, Oztop M, Ploch-Jankowska A, Duda P, Wilczynski S. Water mobility in cheese by means of Nuclear Magnetic Resonance relaxometry. J FOOD ENG 2021. [DOI: 10.1016/j.jfoodeng.2021.110483] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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Anedda R, Pardu A, Korb JP, Curti E. Effect of the manufacturing process on Fiore Sardo PDO cheese microstructure by multi-frequency NMR relaxometry. Food Res Int 2021; 140:110079. [PMID: 33648298 DOI: 10.1016/j.foodres.2020.110079] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2020] [Revised: 12/16/2020] [Accepted: 12/23/2020] [Indexed: 10/22/2022]
Abstract
The quality of Fiore Sardo cheese, a traditional Italian dairy product, was analyzed by means of Multi-frequency Nuclear Magnetic (NMR) relaxometry. Specifically, ten cheese wheels were purchased from different production chains, either industrial (N = 5) or artisanal (N = 5) samples. The former came from large scale productions and the latter were produced by shepherds in small quantities and in very small dairy factories. A preliminary interlaboratory proficiency testing of Time Domain - NMR (TD-NMR, 20 MHz) relaxometry by five laboratories, consistently showed that product quality is significantly different in terms of molecular mobility according to their production chain (i.e. industrial or artisanal). More detailed information about cheese microstructure was obtained by Multi-frequency Fast Field Cycling NMR (FFC-NMR) at lower magnetic fields (0.01-10 MHz). According to the interpretative model adopted to describe FFC-NMR data, industrially processed cheeses showed a higher para-casein hydration, higher protein protons to water protons ratio and a higher disorder (lower fractal dimension df) than artisanal products. It is suggested that differences between artisanal and industrial cheeses generate from the processing steps preceding cheese maturation, and are clearly reflected in the visual appearance of cheeses. This study shows that NMR relaxometry techniques can successfully discriminate Fiore Sardo cheese from different production chains, and paves the way for their implementation in quality control practices of dairy products.
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Affiliation(s)
- R Anedda
- Porto Conte Ricerche s.r.l., S.P. 55 Porto Conte-Capo Caccia, Km 8.400 Loc. Tramariglio, Alghero, SS, Italy.
| | - A Pardu
- Porto Conte Ricerche s.r.l., S.P. 55 Porto Conte-Capo Caccia, Km 8.400 Loc. Tramariglio, Alghero, SS, Italy
| | - J-P Korb
- Sorbonne Université, CNRS, Laboratoire PHysico-chimie des Electrolytes et Nanosystèmes InterfaciauX, PHENIX, F-75005 Paris, France
| | - E Curti
- Porto Conte Ricerche s.r.l., S.P. 55 Porto Conte-Capo Caccia, Km 8.400 Loc. Tramariglio, Alghero, SS, Italy
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46
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Håkansson P. Relaxometry models compared with Bayesian techniques: ganglioside micelle example. Phys Chem Chem Phys 2021; 23:2637-2648. [PMID: 33476345 DOI: 10.1039/d0cp04750c] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this work a methodology to perform Bayesian model-comparison is developed and exemplified in the analysis of nuclear magnetic relaxation dispersion (NMRD) experiments of water in a ganglioside micelle system. NMRD is a powerful tool to probe slow dynamics in complex liquids. There are many interesting systems that can be studied with NMRD, such as ionic and lyotropic liquids or electrolytes. However, to progress in the understanding of the studied systems, relatively detailed theoretical NMRD-models are required. To improve the models, they need to be carefully compared, in addition to physico-chemical considerations of molecular and spin dynamics. The comparison is performed by computing the Bayesian evidence in terms of a thermodynamic integral solved with Markov chain Monte Carlo. The result leads to a conclusion of two micelle water-pools, and rules out both less and more parameters, i.e., one and three pools. On the other hand, if only the quality of the fits is considered (i.e., mean square deviation or χ2) a three water-pool model is the best. The latter can be expected since with more adjustable parameters a better fit is more likely. Bayesian evidence is needed to rank the uncertainty of the models, and in order to explain the outcome a notation of Ockham-entropy is defined. The two approximate selection tools, Akaike and Baysian information criterions, may lead to wrong conclusions compared to the full integration. This methodology is expected to be one of several important tools in NMRD model development; however, it is completely general and should find awakened use in many research areas.
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Affiliation(s)
- Pär Håkansson
- NMR Research Unit, University of Oulu, P.O. Box 3000, 90014 Oulu, Finland.
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Masiewicz E, Ashcroft GP, Boddie D, Dundas SR, Kruk D, Broche LM. Towards applying NMR relaxometry as a diagnostic tool for bone and soft tissue sarcomas: a pilot study. Sci Rep 2020; 10:14207. [PMID: 32848198 PMCID: PMC7449965 DOI: 10.1038/s41598-020-71067-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2020] [Accepted: 07/22/2020] [Indexed: 01/26/2023] Open
Abstract
This work explores what Fast Field-Cycling Nuclear Magnetic Resonance (FFC-NMR) relaxometry brings for the study of sarcoma to guide future in vivo analyses of patients. We present the results of an ex vivo pilot study involving 10 cases of biopsy-proven sarcoma and we propose a quantitative method to analyse 1H NMR relaxation dispersion profiles based on a model-free approach describing the main dynamical processes in the tissues and assessing the amplitude of the Quadrupole Relaxation Enhancement effects due to 14N. This approach showed five distinct groups of dispersion profiles indicating five discrete categories of sarcoma, with differences attributable to microstructure and rigidity. Data from tissues surrounding sarcomas indicated very significant variations with the proximity to tumour, which may be attributed to varying water content but also to tissue remodelling processes due to the sarcoma. This pilot study illustrates the potential of FFC relaxometry for the detection and characterisation of sarcoma.
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Affiliation(s)
- Elzbieta Masiewicz
- Department of Physics and Biophysics, Faculty of Mathematics and Computer Science, University of Warmia and Mazury in Olsztyn, Słoneczna 54, 10-710, Olsztyn, Poland
- Faculty of Food Sciences, University of Warmia and Mazury in Olsztyn, Michała Oczapowskiego 4, 10-719, Olsztyn, Poland
| | - George P Ashcroft
- Department of Orthopaedics, School of Medicine, Medical Sciences and Nutrition, University of Aberdeen, Foresterhill, Aberdeen, AB25 2ZD, Scotland, UK
| | - David Boddie
- Department of Orthopaedics, School of Medicine, Medical Sciences and Nutrition, University of Aberdeen, Foresterhill, Aberdeen, AB25 2ZD, Scotland, UK
| | - Sinclair R Dundas
- Department of Pathology, School of Medicine, Medical Sciences and Nutrition, University of Aberdeen, Foresterhill, Aberdeen, AB25 2ZD, Scotland, UK
| | - Danuta Kruk
- Department of Physics and Biophysics, Faculty of Mathematics and Computer Science, University of Warmia and Mazury in Olsztyn, Słoneczna 54, 10-710, Olsztyn, Poland
| | - Lionel M Broche
- Bio-Medical Physics, School of Medicine, Medical Sciences and Nutrition, University of Aberdeen, Foresterhill, Aberdeen, AB25 2ZD, Scotland, UK.
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Fanost A, Jaber M, de Viguerie L, Korb JP, Levitz PE, Michot LJ, Mériguet G, Rollet AL. Green earth pigments dispersions: Water dynamics at the interfaces. J Colloid Interface Sci 2020; 581:644-655. [PMID: 32814188 DOI: 10.1016/j.jcis.2020.07.085] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2020] [Revised: 07/16/2020] [Accepted: 07/17/2020] [Indexed: 10/23/2022]
Abstract
HYPOTHESIS The objective is to elucidate the multiscale dynamics of water within natural mixtures of minerals, green earth pigments that are mainly composed of phyllosilicates containing large amount of iron. In particular, the interaction of water with the different kinds of surfaces has to be probed. One issue is to examine the influence of surface type, basal or edge, on the dispersion quality. EXPERIMENT The study was carried out using 1H variable field NMR relaxometry on various green earth pigment dispersions and concentrations. To analyse the data, a new analytical model was developed for natural phyllosilicates containing large amount of paramagnetic centres. FINDING The proposed theoretical framework is able to fit the experimental data for various samples using few parameters. It allows to determining water diffusion and residence times in complex phyllosilicate dispersions. Furthermore, it makes it possible to differentiate the contribution of the basal and edge surfaces and their respective surface area in interaction with water. Moreover, NMR relaxation profile reveals to be highly sensitive to the structural aspect of the phyllosilicates and to the accessibility of water to iron, hence allowing to discriminate clearly between two very similar phyllosilicates (glauconite and celadonite) that are difficult to distinguish by standard structural methods.
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Affiliation(s)
- Agathe Fanost
- Sorbonne Université, CNRS, laboratoire PHysico-chimie des Electrolytes et Nanosystèmes InterfaciauX, PHENIX, F-75005 Paris, France; Sorbonne Université, CNRS, laboratoire d'Archéologie Moléculaire et Structurale, LAMS, F-75005 Paris, France
| | - Maguy Jaber
- Sorbonne Université, CNRS, laboratoire d'Archéologie Moléculaire et Structurale, LAMS, F-75005 Paris, France
| | - Laurence de Viguerie
- Sorbonne Université, CNRS, laboratoire d'Archéologie Moléculaire et Structurale, LAMS, F-75005 Paris, France
| | - Jean-Pierre Korb
- Sorbonne Université, CNRS, laboratoire PHysico-chimie des Electrolytes et Nanosystèmes InterfaciauX, PHENIX, F-75005 Paris, France
| | - Pierre E Levitz
- Sorbonne Université, CNRS, laboratoire PHysico-chimie des Electrolytes et Nanosystèmes InterfaciauX, PHENIX, F-75005 Paris, France
| | - Laurent J Michot
- Sorbonne Université, CNRS, laboratoire PHysico-chimie des Electrolytes et Nanosystèmes InterfaciauX, PHENIX, F-75005 Paris, France
| | - Guillaume Mériguet
- Sorbonne Université, CNRS, laboratoire PHysico-chimie des Electrolytes et Nanosystèmes InterfaciauX, PHENIX, F-75005 Paris, France
| | - Anne-Laure Rollet
- Sorbonne Université, CNRS, laboratoire PHysico-chimie des Electrolytes et Nanosystèmes InterfaciauX, PHENIX, F-75005 Paris, France.
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49
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Nuclear Magnetic Resonance with Fast Field-Cycling Setup: A Valid Tool for Soil Quality Investigation. AGRONOMY-BASEL 2020. [DOI: 10.3390/agronomy10071040] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Nuclear magnetic resonance (NMR) techniques are largely employed in several fields. As an example, NMR spectroscopy is used to provide structural and conformational information on pure systems, while affording quantitative evaluation on the number of nuclei in a given chemical environment. When dealing with relaxation, NMR allows understanding of molecular dynamics, i.e., the time evolution of molecular motions. The analysis of relaxation times conducted on complex liquid–liquid and solid–liquid mixtures is directly related to the nature of the interactions among the components of the mixture. In the present review paper, the peculiarities of low resolution fast field-cycling (FFC) NMR relaxometry in soil science are reported. In particular, the general aspects of the typical FFC NMR relaxometry experiment are firstly provided. Afterwards, a discussion on the main mathematical models to be used to “read” and interpret experimental data on soils is given. Following this, an overview on the main results in soil science is supplied. Finally, new FFC NMR-based hypotheses on nutrient dynamics in soils are described
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50
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Porion P, Delville A. A Multi-Scale Study of Water Dynamics under Confinement, Exploiting Numerical Simulations in Relation to NMR Relaxometry, PGSE and NMR Micro-Imaging Experiments: An Application to the Clay/Water Interface. Int J Mol Sci 2020; 21:E4697. [PMID: 32630160 PMCID: PMC7369841 DOI: 10.3390/ijms21134697] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2020] [Revised: 06/19/2020] [Accepted: 06/22/2020] [Indexed: 11/17/2022] Open
Abstract
Water mobility within the porous network of dense clay sediments was investigated over a broad dynamical range by using 2H nuclear magnetic resonance spectroscopy. Multi-quanta 2H NMR spectroscopy and relaxation measurements were first performed to identify the contributions of the various relaxation mechanisms monitoring the time evolution of the nuclear magnetisation of the confined heavy water. Secondly, multi-quanta spin-locking NMR relaxation measurements were then performed over a broad frequency domain, probing the mobility of the confined water molecules on a time-scale varying between microseconds and milliseconds. Thirdly, 1H NMR pulsed-gradient spin-echo attenuation experiments were performed to quantify water mobility on a time-scale limited by the NMR transverse relaxation time of the confined NMR probe, typically a few milliseconds. Fourthly, the long living quantum state of the magnetisation of quadrupolar nuclei was exploited to probe a two-time correlation function at a time-scale reaching one second. Finally, magnetic resonance imaging measurements allow probing the same dynamical process on time-scales varying between seconds and several hours. In that context, multi-scale modelling is required to interpret these NMR measurements and extract information on the influences of the structural properties of the porous network on the apparent mobility of the diffusing water molecules. That dual experimental and numerical approach appears generalizable to a large variety of porous networks, including zeolites, micelles and synthetic or biological membranes.
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Affiliation(s)
- Patrice Porion
- Interfaces, Confinement, Matériaux et Nanostructures (ICMN), UMR 7374, CNRS and Université d’Orléans, 1b rue de la Férollerie, CS 40059, CEDEX 2, F-45071 Orléans, France
| | - Alfred Delville
- Interfaces, Confinement, Matériaux et Nanostructures (ICMN), UMR 7374, CNRS and Université d’Orléans, 1b rue de la Férollerie, CS 40059, CEDEX 2, F-45071 Orléans, France
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