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Svítok A, Blahut J, Urbanovský P, Hermann P. Dynamics of Coordinated Phosphonate Group Directly Observed by 17O-NMR in Lanthanide(iii) Complexes of a Mono(ethyl phosphonate) DOTA Analogue. Chemistry 2024; 30:e202400970. [PMID: 38624256 DOI: 10.1002/chem.202400970] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2024] [Revised: 04/15/2024] [Accepted: 04/16/2024] [Indexed: 04/17/2024]
Abstract
Biological phosphates can coordinate metal ions and their complexes are common in living systems. Dynamics of mutual oxygen atom exchange in the tetrahedral group in complexes has not been investigated. Here, we present a direct experimental proof of exchange ("phosphonate rotation") in model Ln(III) complexes of monophosphonate H4dota analogue which alters phosphorus atom chirality of coordinated phosphonate monoester. Combination of macrocycle-based isomerism with P-based chirality leads to several diastereoisomers. (Non)-coordinated oxygen atoms were distinguished through 17O-labelled phosphonate group and their mutual exchange was followed by various NMR techniques and DFT calculations. The process is sterically demanding and occurs through bulky bidentate (κ2-PO2)- coordination and was observed only in twisted-square antiprism (TSA) diastereoisomer of large Ln(III) ions. Its energy demands increase for smaller Ln(III) ions (298ΔG≠(exp./DFT)=51.8/52.1 and 61.0/71.5 kJ mol-1 for La(III) and Eu(III), respectively). These results are helpful in design of such complexes as MRI CA and for protein paramagnetic NMR probes. It demonstrates usefulness of 17O NMR to study solution dynamics in complexes involving phosphorus acid derivatives and it may inspire use of this method to study dynamics of phosphoric acid derivatives (as e. g. phosphorus acid-based inhibitors of metalloenzymes) in different areas of chemistry.
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Affiliation(s)
- Adam Svítok
- Department Department of Inorganic Chemistry, Faculty of Science, Charles University, Hlavova 2030, 12843, Prague 2, Czech Republic
| | - Jan Blahut
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Science, Flemingovo náměstí 2, 16000, Prague 6, Czech Republic
| | - Peter Urbanovský
- Department Department of Inorganic Chemistry, Faculty of Science, Charles University, Hlavova 2030, 12843, Prague 2, Czech Republic
| | - Petr Hermann
- Department Department of Inorganic Chemistry, Faculty of Science, Charles University, Hlavova 2030, 12843, Prague 2, Czech Republic
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Zapolotsky EN, Babailov SP, Kniazeva MV, Strelnikova YV, Ovsyannikov AS, Gubaidullin AT, Solovieva SE, Antipin IS, Fomin ES, Chuikov IP. Synthesis, crystal structure and NMR-study new mononuclear paramagnetic Er (III) complex based on imine derivatives of thiacalix[4]arene. Inorganica Chim Acta 2023. [DOI: 10.1016/j.ica.2022.121267] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Babailov SP, Stabnikov PA, Zapolotsky EN. 1H NMR STUDY OF MIXED-LIGAND LANTHANIDE COMPLEXES: KINETICS OF INTERMOLECULAR DYNAMICS IN PRASEODYMIUM DIPIVALOYLMETHANATE COMPLEXES WITH 18-CROWN-6. J STRUCT CHEM+ 2022. [DOI: 10.1134/s002247662211021x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Zapolotsky EN, Babailov SP, Fomin ES. STUDY OF THE STRUCTURE AND PARAMAGNETIC PROPERTIES OF THE [Dy(H2O)n(CyDTA)]– COMPLEX IN AN AQUEOUS SOLUTION USING NMR DATA. J STRUCT CHEM+ 2022. [DOI: 10.1134/s0022476622110142] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Zapolotsky E, Pershina E, Babailov S. NMR estimation of the activation energy of conformational dynamics in the [Dy(DOTA)]− complex: Energetic manifestation of the gadolinium break. Polyhedron 2022. [DOI: 10.1016/j.poly.2022.116071] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Zapolotsky EN, Babailov SP. NMR thermosensor properties of lanthanide complexes with diethylenetriamine-N,N,N′,N″,N″-pentaacetic acid [Ln(H2O)(DTPA)]2− (Ln = Pr, Dy, Ho, Yb). Russ Chem Bull 2022. [DOI: 10.1007/s11172-022-3642-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Zapolotsky EN, Babailov SP. Conformational Dynamics and Thermosensory Properties of [Ln(H2O)n(EDTA)]– (Ln = Pr, Eu, Tb, Ho, Er, Tm) Complexes in Aqueous Solutions According to NMR Data. RUSS J INORG CHEM+ 2022. [DOI: 10.1134/s0036023622601064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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[Co(DTPA)]3− complex in gelatin gel as a highly sensitive shifting NMR/MRI temperature probe. J INCL PHENOM MACRO 2022. [DOI: 10.1007/s10847-022-01151-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Zapolotsky EN, Babailov SP, Chuykov IP, Kokovkin VV, Shakirova OG. SPIN CROSSOVER AND TEMPERATURE SENSITIVITY OF PARAMAGNETIC NMR CHEMICAL SHIFTS IN AN AQUEOUS SOLUTION OF THE IRON(II) NAPHTHALENESULFONATE COMPLEX WITH TRIS(PYRAZOL-1-YL)METHANE [Fe(HC(Pz)3)2](C10H7SO3)2. J STRUCT CHEM+ 2022. [DOI: 10.1134/s0022476622060099] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Babailov SP, Polovkova MA, Zapolotsky EN, Kirakosyan GA, Martynov AG, Gorbunova YG. Nuclear magnetic resonance thermosensing properties of holmium(III) and thulium(III) tris(tetra-15-crown-5-phthalocyaninato) complexes. J PORPHYR PHTHALOCYA 2022. [DOI: 10.1142/s1088424622500201] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Temperature dependences of paramagnetic chemical shifts in NMR spectra of lanthanide tris-phthalocyaninates Ln2[(15C5)4Pc]3 (where [(15C5)4Pc][Formula: see text] is 2,3,9,10,16,17,24,25-tetrakis(15-crown-5)phthalocyaninate dianion, Ln = Ho(III), Tm(III)) have been studied in the physiological temperature range (from 303 to 323 K). The observed maximum temperature sensitivity [Formula: see text]/dTturns out to be 0.25 ppm/K for the signals of the thulium complex and 0.16 ppm/K for the holmium complex. By the example of Tm2[(15C5)4Pc]3, it has been shown that the use of temperature sensitivities normalized to signal half-widths ([Formula: see text]CT[Formula: see text]/[Formula: see text] is expedient to judge the applicability of the observed temperature dependences of LISs of analogous lanthanide complexes (Ln = Tb, Dy, Ho, Tm) for determining temperatures. The investigated kinetically and thermodynamically stable Ln2[(15C5)4Pc]3 complexes can be considered promising for the design of thermosensitive NMR probes for determination of the local temperature in nonpolar solutions.
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Affiliation(s)
- Sergey P. Babailov
- Nikolaev Institute of Inorganic Chemistry, Siberian Branch, Russian Academy of Sciences, Av. Lavrentyev 3, Novosibirsk, 630090, Russian Federation
| | - Marina A. Polovkova
- Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Leninskii pr. 31-4, Moscow, 119071, Russian Federation
| | - Evgeny N. Zapolotsky
- Nikolaev Institute of Inorganic Chemistry, Siberian Branch, Russian Academy of Sciences, Av. Lavrentyev 3, Novosibirsk, 630090, Russian Federation
| | - Gayane A. Kirakosyan
- Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Leninskii pr. 31-4, Moscow, 119071, Russian Federation
- Kurnakov Institute of General and Inorganic Chemistry, Russian Academy of Sciences, Leninskii pr. 31, Moscow 119991, Russian Federation
| | - Alexander G. Martynov
- Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Leninskii pr. 31-4, Moscow, 119071, Russian Federation
| | - Yulia G. Gorbunova
- Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Leninskii pr. 31-4, Moscow, 119071, Russian Federation
- Kurnakov Institute of General and Inorganic Chemistry, Russian Academy of Sciences, Leninskii pr. 31, Moscow 119991, Russian Federation
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Babailov S, Zapolotsky E, Kokovkin V, Shakirova O, Mironov I, Chuikov I, Fomin E. Switching of shifting and relaxational NMR-thermosensor properties of iron (II) tris-(pyrazol-1-yl) methane complexes due to spin-crossover. Polyhedron 2022. [DOI: 10.1016/j.poly.2021.115611] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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Zapolotsky EN, Babailov SP. NMR STUDY OF THE TEMPERATURE DEPENDENCE OF PARAMAGNETIC CHEMICAL SHIFTS OF [Co(DTPA)]3–. J STRUCT CHEM+ 2021. [DOI: 10.1134/s002247662111010x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Zapolotsky EN, Qu Y, Babailov SP. Lanthanide complexes with polyaminopolycarboxylates as prospective NMR/MRI diagnostic probes: peculiarities of molecular structure, dynamics and paramagnetic properties. J INCL PHENOM MACRO 2021; 102:1-33. [PMID: 34785985 PMCID: PMC8582344 DOI: 10.1007/s10847-021-01112-3] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2021] [Accepted: 10/05/2021] [Indexed: 11/29/2022]
Abstract
The paramagnetic lanthanide complexes with polyaminopolycarboxylate (PAPC) ligands attract considerable attention from the standpoint of potential applications thereof as relaxation agents used in medical magnetic resonance imaging (MRI) and in luminescent materials, as well as owing to promising use thereof as paramagnetic labels for studying the properties of biopolymers since they exhibit thermodynamic stability, good solubility in aqueous media and moderate toxicity. For the last decades, the NMR methods have been used to determine the physical and chemical properties of paramagnetic Ln compounds. The studies concerning paramagnetic NMR lanthanide-induced shifts (LISs) in dissolved Ln complexes, as well as the analysis of band shape as a function of temperature make it possible to obtain valuable information on the structure, intra- and intermolecular dynamics and paramagnetic properties thereof. This review is devoted solely to the following features: firstly, the processes of intramolecular dynamics of lanthanide complexes with polyamino-polycarboxylate ligands such as DOTA, EDTA and DTPA and their derivatives studied by NMR; secondly, the LISs of lanthanide complexes with EDTA, DOTA, DTPA and some of their derivatives depending on temperature and pH. Moreover, in this review, for the first time, the dependence of the activation energy of molecular dynamics in complexes with polydentate ligands on the atomic number of the lanthanide cation is analyzed and a monotonic change in energy is detected, which is due to the effect of lanthanide contraction. It should be noted that this phenomenon is quite general and may also appear in the future in many other series of lanthanide complexes with both other multidentate ligands and with bidentate and monodentate ligands. In the future, it is possible to predict the dependence of the properties of certain lanthanide complexes on the ionic radius of the lanthanide cation based on the approaches presented in the review. In this review, we have also presented the dynamic NMR as the main research method widely used to analyze the processes of molecular dynamics, and the structural studies based on the NMR relaxation spectroscopy and LIS analysis.
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Affiliation(s)
- Eugeny N. Zapolotsky
- A.V. Nikolaev Institute of Inorganic Chemistry, Siberian Branch of the Russian Academy of Sciences, Av. Lavrentyev 3, Novosibirsk, Russia 630090
| | - Yanyang Qu
- Institute of Chemical Materials, CAEP, P. O. Box 919-311, Mianyang, 621900 Sichun China
| | - Sergey P. Babailov
- A.V. Nikolaev Institute of Inorganic Chemistry, Siberian Branch of the Russian Academy of Sciences, Av. Lavrentyev 3, Novosibirsk, Russia 630090
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Babailov SP, Zapolotsky EN. Dy-DOTA complex as promising shifting and relaxational NMR thermo-sensor probe. Inorganica Chim Acta 2021. [DOI: 10.1016/j.ica.2021.120555] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Babailov SP, Zapolotsky EN. ALGORITHM FOR ANALYSING THE NMR SIGNAL SHAPE TO DETERMINE THE ACTIVATION PARAMETERS OF MOLECULAR DYNAMICS OF PARAMAGNETIC LANTHANIDE COMPLEXES: CONFORMATIONAL DYNAMICS IN THULIUM COMPLEXES WITH A DOTA MACROCYCLIC LIGAND. J STRUCT CHEM+ 2021. [DOI: 10.1134/s0022476621070039] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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16
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1H and 19F NMR study of the processes of dissociation of complexes Tm3+ and Ho3+ with ciprofloxacin. J Fluor Chem 2021. [DOI: 10.1016/j.jfluchem.2021.109776] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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17
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Tm-DOTA as responsive relaxation and shift probe for NMR local temperature monitoring at high magnetic fields. Inorganica Chim Acta 2021. [DOI: 10.1016/j.ica.2020.120153] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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Dy-DTPA as supersensitive shifting and relaxational probe for NMR/MRI control of local temperature. Polyhedron 2021. [DOI: 10.1016/j.poly.2020.114908] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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Babailov SP, Zapolotsky EN. A new approach to determining the structure of lanthanide complexes in solution according to the Curie-spin contribution to the paramagnetic spin-spin relaxation rate enhancements: Ho-DOTA. Polyhedron 2020. [DOI: 10.1016/j.poly.2020.114487] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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Selyutina OY, Kononova PA, Babailov SP. Complex of praseodymium with lipid as a NMR temperature sensor and probe of liposome states. NEW J CHEM 2020. [DOI: 10.1039/d0nj03707a] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The goal of the research was to show the limits within which Pr3+ can be used as a linear response probe.
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Affiliation(s)
| | - P. A. Kononova
- Institute of Chemical Kinetics and Combustion
- Novosibirsk
- Russia
| | - S. P. Babailov
- A. V. Nikolaev Institute of Inorganic Chemistry
- The Siberian Branch of the Russian Academy of Sciences
- Novosibirsk
- Russian Federation
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Babailov SP, Zapolotsky EN, Basova TV. Holmium-DOTA as a responsive relaxation paramagnetic probe for NMR/MRI control of local temperature at high magnetic fields. Inorganica Chim Acta 2019. [DOI: 10.1016/j.ica.2019.04.003] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Two types of conformational dynamics and thermo-sensor properties of praseodymium-DOTA by 1H/13C NMR. Inorganica Chim Acta 2019. [DOI: 10.1016/j.ica.2018.10.044] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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Babailov SP, Purtov PA, Fomin ES. Dynamic NMR under nonstationary conditions: Theoretical model, numerical calculation, and potential of application. J Chem Phys 2016; 145:054201. [DOI: 10.1063/1.4959592] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- S. P. Babailov
- A. V. Nikolaevs Institute of Inorganic Chemistry, Siberian Branch, Russian Academy of Sciences, Novosibirsk, Russian Federation
- National Research Tomsk Polytechnic University, Lenin Avenue 30, Tomsk 634050, Russia
| | - P. A. Purtov
- Voevodsky Institute of Chemical Kinetics and Combustion, Siberian Branch of the Russian Academy of Sciences, Insitutskaya 3, 630090 Novosibirsk, Russian Federation
| | - E. S. Fomin
- Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Av. Lavrentyev 10, 630090 Novosibirsk, Russia
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Structure and paramagnetic properties of tris -pivaloyltrifluoracetonate thulium(III) complexes with 18-crown-6 by X-ray analysis and NMR. Polyhedron 2016. [DOI: 10.1016/j.poly.2015.12.014] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Activation energies of intermolecular dynamics in ethylenediaminetetraacetate complexes with lanthanides: An effect of the “gadolinium break”. Inorganica Chim Acta 2016. [DOI: 10.1016/j.ica.2015.10.009] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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Brath U, Swamy SI, Veiga AX, Tung CC, Van Petegem F, Erdélyi M. Paramagnetic Ligand Tagging To Identify Protein Binding Sites. J Am Chem Soc 2015; 137:11391-8. [PMID: 26289584 PMCID: PMC4583072 DOI: 10.1021/jacs.5b06220] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
![]()
Transient
biomolecular interactions are the cornerstones of the
cellular machinery. The identification of the binding sites for low
affinity molecular encounters is essential for the development of
high affinity pharmaceuticals from weakly binding leads but is hindered
by the lack of robust methodologies for characterization of weakly
binding complexes. We introduce a paramagnetic ligand tagging approach
that enables localization of low affinity protein–ligand binding
clefts by detection and analysis of intermolecular protein NMR pseudocontact
shifts, which are invoked by the covalent attachment of a paramagnetic
lanthanoid chelating tag to the ligand of interest. The methodology
is corroborated by identification of the low millimolar volatile anesthetic
interaction site of the calcium sensor protein calmodulin. It presents
an efficient route to binding site localization for low affinity complexes
and is applicable to rapid screening of protein–ligand systems
with varying binding affinity.
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Affiliation(s)
- Ulrika Brath
- Department of Chemistry and Molecular Biology and the Swedish NMR Centre, University of Gothenburg , SE-412 96 Gothenburg, Sweden
| | - Shashikala I Swamy
- Department of Chemistry and Molecular Biology and the Swedish NMR Centre, University of Gothenburg , SE-412 96 Gothenburg, Sweden
| | - Alberte X Veiga
- Department of Chemistry and Molecular Biology and the Swedish NMR Centre, University of Gothenburg , SE-412 96 Gothenburg, Sweden
| | - Ching-Chieh Tung
- Department of Biochemistry and Molecular Biology, University of British Columbia , Vancouver, BC V6T 1Z3, Canada
| | - Filip Van Petegem
- Department of Biochemistry and Molecular Biology, University of British Columbia , Vancouver, BC V6T 1Z3, Canada
| | - Máté Erdélyi
- Department of Chemistry and Molecular Biology and the Swedish NMR Centre, University of Gothenburg , SE-412 96 Gothenburg, Sweden
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