1
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Ren Y, Cheng Z, Cheng L, Liu Y, Li M, Yuan T, Shen Z. Theoretical calculation on degradation mechanism of novel copolyesters under CALB enzyme. J Environ Sci (China) 2025; 149:242-253. [PMID: 39181639 DOI: 10.1016/j.jes.2023.12.018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Revised: 11/13/2023] [Accepted: 12/23/2023] [Indexed: 08/27/2024]
Abstract
Poly(butylene succinate-co-furandicarboxylate) (PBSF) and poly(butylene adipate-co-furandicarboxylate) (PBAF) are novel furandicarboxylic acid-based biodegradable copolyesters with great potential to replace fossil-derived terephthalic acid-based copolyesters such as poly(butylene succinate-co-terephthalate) (PBST) and poly(butylene adipate-co-terephthalate) (PBAT). In this study, quantum chemistry techniques after molecular dynamics simulations are employed to investigate the degradation mechanism of PBSF and PBAF catalyzed by Candida antarctica lipase B (CALB). Computational analysis indicates that the catalytic reaction follows a four-step mechanism resembling the ping-pong bibi mechanism, with the initial two steps being acylation reactions and the subsequent two being hydrolysis reactions. Notably, the first step of the hydrolysis is identified as the rate-determining step. Moreover, by introducing single-point mutations to expand the substrate entrance tunnel, the catalytic distance of the first acylation step decreases. Additionally, energy barrier of the rate-determining step is decreased in the PBSF system by site-directed mutations on key residues increasing hydrophobicity of the enzyme's active site. This study unprecedently show the substrate binding pocket and hydrophobicity of the enzyme's active site have the potential to be engineered to enhance the degradation of copolyesters catalyzed by CALB.
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Affiliation(s)
- Yuanyang Ren
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Zhiwen Cheng
- State Environmental Protection Key Laboratory of Environmental Health Impact Assessment of Emerging Contaminants, Shanghai 200240, China; School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Luwei Cheng
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Yawei Liu
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Mingyue Li
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Tao Yuan
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China; State Environmental Protection Key Laboratory of Environmental Health Impact Assessment of Emerging Contaminants, Shanghai 200240, China.
| | - Zhemin Shen
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China; State Environmental Protection Key Laboratory of Environmental Health Impact Assessment of Emerging Contaminants, Shanghai 200240, China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, China.
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2
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Pan H, Yu T, Zheng Y, Ma H, Shan J, Yi X, Liu Y, Zhan J, Wang W, Zhou H. Isolation, characteristics, and poly(butylene adipate-co-terephthalate) (PBAT) degradation mechanism of a marine bacteria Roseibium aggregatum ZY-1. MARINE POLLUTION BULLETIN 2024; 201:116261. [PMID: 38537567 DOI: 10.1016/j.marpolbul.2024.116261] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2023] [Revised: 03/11/2024] [Accepted: 03/11/2024] [Indexed: 04/07/2024]
Abstract
Marine microorganisms have been reported to degrade microplastics. However, the degradation mechanisms are still poorly understood. In this study, a bacterium Roseibium aggregatum ZY-1 was isolated from seawater, which can degrade poly(butylene adipate-co-terephthalate) (PBAT). The PBAT-PLA(polylactic acid, PLA) films, before and after degradation, were characterized by scanning electron microscope (SEM) and Fourier transform infrared spectrometer (FTIR), the weight loss rate and water contact angle were measured. The results indicate that ZY-1 colonized on PBAT-PLA film, changed the functional groups and decreased water contact angle of PBAT-PLA film. Moreover, liquid chromatography mass spectrometry (LC-MS) analysis reveales that PBAT was degraded into its oligomers (TB, BTB) and monomers (T, A) during 10 days, and adipic acid (A) could be used as a sole carbon source. The whole genome sequencing analyses illustrate the mechanisms and enzymes such as PETase, carboxylesterases, arylesterase (PpEst) and genes like pobA, pcaBCDFGHIJKT, dcaAEIJK, paaGHJ involved in PBAT degradation. Therefore, the R. aggregatum ZY-1 will be a promising candidate of PBAT degradation.
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Affiliation(s)
- Haixia Pan
- Key Laboratory of Industrial Ecology and Environmental Engineering (Ministry of Education), School of Ocean Science and Technology, Panjin Campus, Dalian University of Technology, Panjin, China
| | - Tianyi Yu
- Key Laboratory of Industrial Ecology and Environmental Engineering (Ministry of Education), School of Ocean Science and Technology, Panjin Campus, Dalian University of Technology, Panjin, China
| | - Yuan Zheng
- Key Laboratory of Industrial Ecology and Environmental Engineering (Ministry of Education), School of Ocean Science and Technology, Panjin Campus, Dalian University of Technology, Panjin, China
| | - Huiqing Ma
- Key Laboratory of Industrial Ecology and Environmental Engineering (Ministry of Education), School of Ocean Science and Technology, Panjin Campus, Dalian University of Technology, Panjin, China
| | - Jiajia Shan
- Key Laboratory of Industrial Ecology and Environmental Engineering (Ministry of Education), School of Ocean Science and Technology, Panjin Campus, Dalian University of Technology, Panjin, China
| | - Xianliang Yi
- Key Laboratory of Industrial Ecology and Environmental Engineering (Ministry of Education), School of Ocean Science and Technology, Panjin Campus, Dalian University of Technology, Panjin, China
| | - Yang Liu
- Key Laboratory of Industrial Ecology and Environmental Engineering (Ministry of Education), School of Ocean Science and Technology, Panjin Campus, Dalian University of Technology, Panjin, China
| | - Jingjing Zhan
- Key Laboratory of Industrial Ecology and Environmental Engineering (Ministry of Education), School of Ocean Science and Technology, Panjin Campus, Dalian University of Technology, Panjin, China
| | - Wenyuan Wang
- State Key Laboratory of Coastal and Offshore Engineering, Dalian University of Technology, Dalian 116024, China.
| | - Hao Zhou
- Key Laboratory of Industrial Ecology and Environmental Engineering (Ministry of Education), School of Ocean Science and Technology, Panjin Campus, Dalian University of Technology, Panjin, China.
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3
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Ko Y, Yang Y, Kim D, Lee YH, Ghatge S, Hur HG. Fungal biodegradation of poly(butylene adipate-co-terephthalate)-polylactic acid-thermoplastic starch based commercial bio-plastic film at ambient conditions. CHEMOSPHERE 2024; 353:141554. [PMID: 38430940 DOI: 10.1016/j.chemosphere.2024.141554] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Revised: 02/23/2024] [Accepted: 02/24/2024] [Indexed: 03/05/2024]
Abstract
Microbial biodegradation of commercially available poly(butylene adipate-co-terephthalate)-polylactic acid-thermoplastic starch based bio-plastic has been pursued at high temperatures exceeding 55 °C. Herein, we first reported three newly isolated fungal strains from farmland soil samples of Republic of Korea namely, Pyrenochaetopsis sp. strain K2, Staphylotrichum sp. S2-1, and Humicola sp. strain S2-3 were capable of degrading a commercial bio-plastic film with degradation rates of 9.5, 8.6, and 12.2%, respectively after 3 months incubation at ambient conditions. Scanning electron microscopy (SEM) analyses showed that bio-plastic film was extensively fragmented with severe cracking on the surface structure after incubation with isolated fungal strains. X-ray diffraction (XRD) analysis also revealed that high crystallinity of the commercial bio-plastic film was significantly decreased after degradation by fungal strains. Liquid chromatography-mass spectrometry (LC-MS) analyses of the fungal culture supernatants containing the bio-plastic film showed the peaks for adipic acid, terephthalic acid (TPA), and terephthalate-butylene (TB) as major metabolites, suggesting cleavage of ester bonds and accumulation of TPA. Furthermore, a consortium of fungal strain K2 with TPA degrading bacterium Pigmentiphaga sp. strain P3-2 isolated from the same sampling site exhibited faster degradation rate of the bio-plastic film within 1 month of incubation with achieving complete biodegradation of accumulated TPA. We assume that the extracellular lipase activity presented in the fungal cultures could hydrolyze the ester bonds of PBAT component of bio-plastic film. Taken together, the fungal and bacterial consortium investigated herein could be beneficial for efficient biodegradation of the commercial bio-plastic film at ambient conditions.
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Affiliation(s)
- Yongseok Ko
- School of Earth Sciences and Environmental Engineering, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Republic of Korea
| | - Youri Yang
- Department of Biological Environment, Kangwon National University, 1 Kangwondaehak-gil, Chuncheon, Gangwon State, 24341, Republic of Korea
| | - Dockyu Kim
- Division of Life Sciences, Korea Polar Research Institute, Incheon, 21990, Republic of Korea
| | - Yong Hwan Lee
- GREEN-BIO Co., Ltd, 201, Venture Support Center, 333, Gwangju 61005, Republic of Korea
| | - Sunil Ghatge
- School of Earth Sciences and Environmental Engineering, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Republic of Korea; GREEN-BIO Co., Ltd, 201, Venture Support Center, 333, Gwangju 61005, Republic of Korea.
| | - Hor-Gil Hur
- School of Earth Sciences and Environmental Engineering, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Republic of Korea.
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4
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Han Y, Teng Y, Wang X, Wen D, Gao P, Yan D, Yang N. Biodegradable PBAT microplastics adversely affect pakchoi (Brassica chinensis L.) growth and the rhizosphere ecology: Focusing on rhizosphere microbial community composition, element metabolic potential, and root exudates. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 912:169048. [PMID: 38061654 DOI: 10.1016/j.scitotenv.2023.169048] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Revised: 11/28/2023] [Accepted: 11/30/2023] [Indexed: 01/18/2024]
Abstract
Biodegradable plastics (BPs) have gained increased attention as a promising solution to plastics pollution problem. However, BPs often exhibited limited in situ biodegradation in the soil environment, so they may also release microplastics (MPs) into soils just like conventional non-degradable plastics. Therefore, it is necessary to evaluate the impacts of biodegradable MPs (BMPs) on soil ecosystem. Here, we explored the effects of biodegradable poly(butylene adipate-co-terephthalate) (PBAT) MPs and conventional polyethylene (PE) MPs on soil-plant (pakchoi) system at three doses (0.02 %, 0.2 %, and 2 %, w/w). Results showed that PBAT MPs reduced plant growth in a dose-dependent pattern, while PE MPs exhibited no significant phytotoxicity. High-dose PBAT MPs negatively affected the rhizosphere soil nutrient availability, e.g., decreased available phosphorus and available potassium. Metagenomics analysis revealed that PBAT MPs caused more serious interference with the rhizosphere microbial community composition and function than PE MPs. In particular, compared with PE MPs, PBAT MPs induced greater changes in functional potential of carbon, nitrogen, phosphorus, and sulfur cycles, which may lead to alterations in soil biogeochemical processes and ecological functions. Moreover, untargeted metabolomics showed that PBAT MPs and PE MPs differentially affect plant root exudates. Mantel tests, correlation analysis, and partial least squares path model analysis showed that changes in plant growth and root exudates were significantly correlated with soil properties and rhizosphere microbiome driven by the MPs-rhizosphere interactions. This work improves our knowledge of how biodegradable and conventional non-degradable MPs affect plant growth and the rhizosphere ecology, highlighting that BMPs might pose greater threat to soil ecosystems than non-degradable MPs.
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Affiliation(s)
- Yujuan Han
- Institute of Vegetables, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Ying Teng
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Xiao Wang
- Institute of Vegetables, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Dan Wen
- Institute of Vegetables, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Peixin Gao
- Institute of Plant Protection, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Dong Yan
- Institute of Vegetables, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Ning Yang
- Institute of Vegetables, Shandong Academy of Agricultural Sciences, Jinan 250100, China.
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5
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Tseng WS, Lee MJ, Wu JA, Kuo SL, Chang SL, Huang SJ, Liu CT. Poly(butylene adipate-co-terephthalate) biodegradation by Purpureocillium lilacinum strain BA1S. Appl Microbiol Biotechnol 2023; 107:6057-6070. [PMID: 37526695 DOI: 10.1007/s00253-023-12704-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Revised: 07/18/2023] [Accepted: 07/21/2023] [Indexed: 08/02/2023]
Abstract
Poly(butylene adipate-co-terephthalate) (PBAT), a promising biodegradable aliphatic-aromatic copolyester material, can be applied as an alternative material to reduce the adverse effects of conventional plastics. However, the degradation of PBAT plastics in soil is time-consuming, and effective PBAT-degrading microorganisms have rarely been reported. In this study, the biodegradation properties of PBAT by an elite fungal strain and related mechanisms were elucidated. Four PBAT-degrading fungal strains were isolated from farmland soils, and Purpureocillium lilacinum strain BA1S showed a prominent degradation rate. It decomposed approximately 15 wt.% of the PBAT films 30 days after inoculation. Scanning electron microscopy (SEM), Fourier transform infrared spectroscopy (FTIR), and Liquid chromatography mass spectrometry (LC‒MS) were conducted to analyze the physicochemical properties and composition of the byproducts after biodegradation. In the presence of PBAT, the lipolytic enzyme activities of BA1S were remarkably induced, and its cutinase gene was also significantly upregulated. Of note, the utilization of PBAT in BA1S cells was closely correlated with intracellular cytochrome P450 (CYP) monooxygenase. Furthermore, CreA-mediated carbon catabolite repression was confirmed to be involved in regulating PBAT-degrading hydrolases and affected the degradation efficiency. This study provides new insight into the degradation of PBAT by elite fungal strains and increases knowledge on the mechanism, which can be applied to control the biodegradability of PBAT films in the future. KEY POINTS: • Purpureocillium lilacinum strain BA1S was isolated from farmland soils and degraded PBAT plastic films at a prominent rate. • The lipolytic enzyme activities of strain BA1S were induced during coculture with PBAT, and the cutinase gene was significantly upregulated during PBAT degradation. • CreA-mediated carbon catabolite repression of BA1S plays an essential role in regulating the expression of PBAT-degrading hydrolases.
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Affiliation(s)
- Wei-Sung Tseng
- Institute of Biotechnology, National Taiwan University, R412, No. 81, Chang-Xing St, Taipei, 106, Taiwan
| | - Min-Jia Lee
- Institute of Biotechnology, National Taiwan University, R412, No. 81, Chang-Xing St, Taipei, 106, Taiwan
| | - Jin-An Wu
- Material and Chemical Research Laboratories, Industrial Technology Research Institute, 321 Kuang Fu Rd., Section 2, Hsinchu, Taiwan
| | - Shin-Liang Kuo
- Material and Chemical Research Laboratories, Industrial Technology Research Institute, 321 Kuang Fu Rd., Section 2, Hsinchu, Taiwan
| | - Sheng-Lung Chang
- Material and Chemical Research Laboratories, Industrial Technology Research Institute, 321 Kuang Fu Rd., Section 2, Hsinchu, Taiwan
| | - Shu-Jiuan Huang
- Material and Chemical Research Laboratories, Industrial Technology Research Institute, 321 Kuang Fu Rd., Section 2, Hsinchu, Taiwan
| | - Chi-Te Liu
- Institute of Biotechnology, National Taiwan University, R412, No. 81, Chang-Xing St, Taipei, 106, Taiwan.
- Department of Agricultural Chemistry, National Taiwan University No, 1, Sec. Roosevelt Road, Taipei, 106, Taiwan.
- Agricultural Biotechnology Research Center, Academia Sinica, No.128, Sec.2, Academia Rd., Nankang, Taipei, 115, Taiwan.
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6
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Yang Y, Min J, Xue T, Jiang P, Liu X, Peng R, Huang JW, Qu Y, Li X, Ma N, Tsai FC, Dai L, Zhang Q, Liu Y, Chen CC, Guo RT. Complete bio-degradation of poly(butylene adipate-co-terephthalate) via engineered cutinases. Nat Commun 2023; 14:1645. [PMID: 36964144 PMCID: PMC10039075 DOI: 10.1038/s41467-023-37374-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Accepted: 03/15/2023] [Indexed: 03/26/2023] Open
Abstract
Poly(butylene adipate-co-terephthalate) (PBAT), a polyester made of terephthalic acid (TPA), 1,4-butanediol, and adipic acid, is extensively utilized in plastic production and has accumulated globally as environmental waste. Biodegradation is an attractive strategy to manage PBAT, but an effective PBAT-degrading enzyme is required. Here, we demonstrate that cutinases are highly potent enzymes that can completely decompose PBAT films in 48 h. We further show that the engineered cutinases, by applying a double mutation strategy to render a more flexible substrate-binding pocket exhibit higher decomposition rates. Notably, these variants produce TPA as a major end-product, which is beneficial feature for the future recycling economy. The crystal structures of wild type and double mutation of a cutinase from Thermobifida fusca in complex with a substrate analogue are also solved, elucidating their substrate-binding modes. These structural and biochemical analyses enable us to propose the mechanism of cutinase-mediated PBAT degradation.
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Affiliation(s)
- Yu Yang
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei Hongshan Laboratory, Hubei Collaborative Innovation Center for Green Transformation of Bio-Resources, Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, 430062, Wuhan, People's Republic of China
| | - Jian Min
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei Hongshan Laboratory, Hubei Collaborative Innovation Center for Green Transformation of Bio-Resources, Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, 430062, Wuhan, People's Republic of China
| | - Ting Xue
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei Hongshan Laboratory, Hubei Collaborative Innovation Center for Green Transformation of Bio-Resources, Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, 430062, Wuhan, People's Republic of China
| | - Pengcheng Jiang
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei Hongshan Laboratory, Hubei Collaborative Innovation Center for Green Transformation of Bio-Resources, Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, 430062, Wuhan, People's Republic of China
| | - Xin Liu
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei Hongshan Laboratory, Hubei Collaborative Innovation Center for Green Transformation of Bio-Resources, Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, 430062, Wuhan, People's Republic of China
| | - Rouming Peng
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei Hongshan Laboratory, Hubei Collaborative Innovation Center for Green Transformation of Bio-Resources, Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, 430062, Wuhan, People's Republic of China
| | - Jian-Wen Huang
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei Hongshan Laboratory, Hubei Collaborative Innovation Center for Green Transformation of Bio-Resources, Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, 430062, Wuhan, People's Republic of China
| | - Yingying Qu
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei Hongshan Laboratory, Hubei Collaborative Innovation Center for Green Transformation of Bio-Resources, Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, 430062, Wuhan, People's Republic of China
| | - Xian Li
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei Hongshan Laboratory, Hubei Collaborative Innovation Center for Green Transformation of Bio-Resources, Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, 430062, Wuhan, People's Republic of China
| | - Ning Ma
- Hubei Key Laboratory of Polymer Materials, Key Laboratory for the Green Preparation and Application of Functional Materials (Ministry of Education), Hubei Collaborative Innovation Center for Advanced Organic Chemical Materials, School of Materials Science and Engineering, Hubei University, 430062, Wuhan, People's Republic of China
| | - Fang-Chang Tsai
- Hubei Key Laboratory of Polymer Materials, Key Laboratory for the Green Preparation and Application of Functional Materials (Ministry of Education), Hubei Collaborative Innovation Center for Advanced Organic Chemical Materials, School of Materials Science and Engineering, Hubei University, 430062, Wuhan, People's Republic of China
| | - Longhai Dai
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei Hongshan Laboratory, Hubei Collaborative Innovation Center for Green Transformation of Bio-Resources, Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, 430062, Wuhan, People's Republic of China
| | - Qi Zhang
- State Key Laboratory of Virology, College of Life Sciences, Wuhan University, 430072, Wuhan, People's Republic of China
| | - Yingle Liu
- State Key Laboratory of Virology, College of Life Sciences, Wuhan University, 430072, Wuhan, People's Republic of China.
| | - Chun-Chi Chen
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei Hongshan Laboratory, Hubei Collaborative Innovation Center for Green Transformation of Bio-Resources, Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, 430062, Wuhan, People's Republic of China.
| | - Rey-Ting Guo
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei Hongshan Laboratory, Hubei Collaborative Innovation Center for Green Transformation of Bio-Resources, Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, 430062, Wuhan, People's Republic of China.
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7
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Enzymatic hydrolysis of poly(butylene adipate-co-terephthalate) by Fusarium solani cutinase. Polym Degrad Stab 2023. [DOI: 10.1016/j.polymdegradstab.2023.110335] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/14/2023]
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8
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Xu PY, Liu TY, Huang D, Zhen ZC, Lu B, Li X, Zheng WZ, Zhang ZY, Wang GX, Ji JH. Enhanced degradability of novel PBATCL copolyester: study on the performance in different environment and exploration of mechanism. Eur Polym J 2023. [DOI: 10.1016/j.eurpolymj.2023.111834] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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9
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Wufuer R, Li W, Wang S, Duo J. Isolation and Degradation Characteristics of PBAT Film Degrading Bacteria. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2022; 19:17087. [PMID: 36554967 PMCID: PMC9779299 DOI: 10.3390/ijerph192417087] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/02/2022] [Revised: 12/14/2022] [Accepted: 12/15/2022] [Indexed: 06/17/2023]
Abstract
In recent years, PBAT (polybutylene adipate-co-terephthalate) mulch has become one of the most commonly used biodegradable mulching films. In this paper, five potential strains of PBAT film degrading bacteria were screened from the soil sample using PBAT film as the sole carbon source. A highly efficient PBAT degrading strain JZ1 was isolated by comparing the degradation performance of PBAT mulching film identified as Peribacillus frigoritolerans S2313 by 16S rDNA sequence analysis. The capacity of the strain to degrade PBAT film was optimized by adjusting the cultivation conditions such as nitrogen source, pH, and inoculum volume. After 8 weeks of cultivation, the actual degradation rate of the strain to PBAT mulch film reached 12.45%. SEM (scanning electron microscopy) coupled with EDX (energy dispersive spectroscopy) analysis showed that microbial degradation is an oxidation process and is mainly due to the amorphous regions of the PBAT film. The biodegradation of PBAT film by Peribacillus frigoritolerans may provide a promising method for regulating the degradation progress of PBAT film in the farmlands.
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Affiliation(s)
- Rehemanjiang Wufuer
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China
- Xinjiang Key Laboratory of Environmental Pollution and Bioremediation, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China
| | - Wenfeng Li
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China
- Xinjiang Key Laboratory of Environmental Pollution and Bioremediation, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China
| | - Shuzhi Wang
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China
- Xinjiang Key Laboratory of Environmental Pollution and Bioremediation, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China
| | - Jia Duo
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China
- Xinjiang Key Laboratory of Environmental Pollution and Bioremediation, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China
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10
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Bher A, Mayekar PC, Auras RA, Schvezov CE. Biodegradation of Biodegradable Polymers in Mesophilic Aerobic Environments. Int J Mol Sci 2022; 23:12165. [PMID: 36293023 PMCID: PMC9603655 DOI: 10.3390/ijms232012165] [Citation(s) in RCA: 27] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Revised: 10/03/2022] [Accepted: 10/07/2022] [Indexed: 08/29/2023] Open
Abstract
Finding alternatives to diminish plastic pollution has become one of the main challenges of modern life. A few alternatives have gained potential for a shift toward a more circular and sustainable relationship with plastics. Biodegradable polymers derived from bio- and fossil-based sources have emerged as one feasible alternative to overcome inconveniences associated with the use and disposal of non-biodegradable polymers. The biodegradation process depends on the environment's factors, microorganisms and associated enzymes, and the polymer properties, resulting in a plethora of parameters that create a complex process whereby biodegradation times and rates can vary immensely. This review aims to provide a background and a comprehensive, systematic, and critical overview of this complex process with a special focus on the mesophilic range. Activity toward depolymerization by extracellular enzymes, biofilm effect on the dynamic of the degradation process, CO2 evolution evaluating the extent of biodegradation, and metabolic pathways are discussed. Remarks and perspectives for potential future research are provided with a focus on the current knowledge gaps if the goal is to minimize the persistence of plastics across environments. Innovative approaches such as the addition of specific compounds to trigger depolymerization under particular conditions, biostimulation, bioaugmentation, and the addition of natural and/or modified enzymes are state-of-the-art methods that need faster development. Furthermore, methods must be connected to standards and techniques that fully track the biodegradation process. More transdisciplinary research within areas of polymer chemistry/processing and microbiology/biochemistry is needed.
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Affiliation(s)
- Anibal Bher
- School of Packaging, Michigan State University, East Lansing, MI 48824, USA
- Instituto de Materiales de Misiones, CONICET-UNaM, Posadas 3300, Misiones, Argentina
| | - Pooja C. Mayekar
- School of Packaging, Michigan State University, East Lansing, MI 48824, USA
| | - Rafael A. Auras
- School of Packaging, Michigan State University, East Lansing, MI 48824, USA
| | - Carlos E. Schvezov
- Instituto de Materiales de Misiones, CONICET-UNaM, Posadas 3300, Misiones, Argentina
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Meyer Cifuentes IE, Wu P, Zhao Y, Liu W, Neumann-Schaal M, Pfaff L, Barys J, Li Z, Gao J, Han X, Bornscheuer UT, Wei R, Öztürk B. Molecular and Biochemical Differences of the Tandem and Cold-Adapted PET Hydrolases Ple628 and Ple629, Isolated From a Marine Microbial Consortium. Front Bioeng Biotechnol 2022; 10:930140. [PMID: 35935485 PMCID: PMC9350882 DOI: 10.3389/fbioe.2022.930140] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2022] [Accepted: 05/23/2022] [Indexed: 01/27/2023] Open
Abstract
Polybutylene adipate terephthalate (PBAT) is a biodegradable alternative to polyethylene and can be broadly used in various applications. These polymers can be degraded by hydrolases of terrestrial and aquatic origin. In a previous study, we identified tandem PETase-like hydrolases (Ples) from the marine microbial consortium I1 that were highly expressed when a PBAT blend was supplied as the only carbon source. In this study, the tandem Ples, Ple628 and Ple629, were recombinantly expressed and characterized. Both enzymes are mesophilic and active on a wide range of oligomers. The activities of the Ples differed greatly when model substrates, PBAT-modified polymers or PET nanoparticles were supplied. Ple629 was always more active than Ple628. Crystal structures of Ple628 and Ple629 revealed a structural similarity to other PETases and can be classified as member of the PETases IIa subclass, α/β hydrolase superfamily. Our results show that the predicted functions of Ple628 and Ple629 agree with the bioinformatic predictions, and these enzymes play a significant role in the plastic degradation by the consortium.
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Affiliation(s)
- Ingrid E. Meyer Cifuentes
- Junior Research Group Microbial Biotechnology, Leibniz Institute DSMZ—German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany
| | - Pan Wu
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China
- College of Biotechnology, Tianjin University of Science and Technology, Tianjin, China
| | - Yipei Zhao
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China
- College of Biotechnology, Tianjin University of Science and Technology, Tianjin, China
| | - Weidong Liu
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China
| | - Meina Neumann-Schaal
- Research Group Metabolomics, Leibniz Institute DSMZ—German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany
| | - Lara Pfaff
- Junior Research Group Plastic Biodegradation, Institute of Biochemistry, Department of Biotechnology and Enzyme Catalysis, University of Greifswald, Greifswald, Germany
| | - Justyna Barys
- Junior Research Group Microbial Biotechnology, Leibniz Institute DSMZ—German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany
| | - Zhishuai Li
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China
| | - Jian Gao
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China
| | - Xu Han
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China
| | - Uwe T. Bornscheuer
- Department of Biotechnology and Enzyme Catalysis, Institute of Biochemistry, University of Greifswald, Greifswald, Germany
| | - Ren Wei
- Junior Research Group Plastic Biodegradation, Institute of Biochemistry, Department of Biotechnology and Enzyme Catalysis, University of Greifswald, Greifswald, Germany
| | - Başak Öztürk
- Junior Research Group Microbial Biotechnology, Leibniz Institute DSMZ—German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany
- *Correspondence: Başak Öztürk,
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Fei X, Wang J, Zhang X, Jia Z, Jiang Y, Liu X. Recent Progress on Bio-Based Polyesters Derived from 2,5-Furandicarbonxylic Acid (FDCA). Polymers (Basel) 2022; 14:E625. [PMID: 35160613 PMCID: PMC8838965 DOI: 10.3390/polym14030625] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Revised: 02/02/2022] [Accepted: 02/05/2022] [Indexed: 11/16/2022] Open
Abstract
The big challenge today is the upgrading of sustainable materials to replace miscellaneous ones from petroleum resources. Thus, a generic bio-based building block lays the foundation of the huge bio-market to green economy. 2,5-Furandicarboxylic acid (FDCA), a rigid diacid derived from lignocellulose or fructose, represents a great potential as a contender to terephthalic acid (TPA). Recently, studies on the synthesis, modification, and functionalization of bio-based polyesters based on FDCA have attracted widespread attention. To apply furanic polyesters on engineering plastics, packaging materials, electronics, etc., researchers have extended the properties of basic FDCA-based homo-polyesters by directional copolymerization and composite preparation. This review covers the synthesis and performance of polyesters and composites based on FDCA with emphasis bedded on the thermomechanical, crystallization, barrier properties, and biodegradability. Finally, a summary of what has been achieved and the issues waiting to be addressed of FDCA-based polyester materials are suggested.
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Affiliation(s)
- Xuan Fei
- Ningbo Institute of Materials Technology and Engineering, Chinese Academy of Sciences, 1219 Zhongguan West Road, Zhenhai District, Ningbo 315201, China; (X.F.); (X.Z.); (Z.J.); (Y.J.)
- Key Laboratory of Bio-Based Polymeric Materials Technology and Application of Zhejiang Province, 1219 Zhongguan West Road, Zhenhai District, Ningbo 315201, China
- University of Chinese Academy of Sciences, No.19 A, Yuquan Road, Shijingshan District, Beijing 100049, China
| | - Jinggang Wang
- Ningbo Institute of Materials Technology and Engineering, Chinese Academy of Sciences, 1219 Zhongguan West Road, Zhenhai District, Ningbo 315201, China; (X.F.); (X.Z.); (Z.J.); (Y.J.)
- Key Laboratory of Bio-Based Polymeric Materials Technology and Application of Zhejiang Province, 1219 Zhongguan West Road, Zhenhai District, Ningbo 315201, China
| | - Xiaoqin Zhang
- Ningbo Institute of Materials Technology and Engineering, Chinese Academy of Sciences, 1219 Zhongguan West Road, Zhenhai District, Ningbo 315201, China; (X.F.); (X.Z.); (Z.J.); (Y.J.)
- Key Laboratory of Bio-Based Polymeric Materials Technology and Application of Zhejiang Province, 1219 Zhongguan West Road, Zhenhai District, Ningbo 315201, China
| | - Zhen Jia
- Ningbo Institute of Materials Technology and Engineering, Chinese Academy of Sciences, 1219 Zhongguan West Road, Zhenhai District, Ningbo 315201, China; (X.F.); (X.Z.); (Z.J.); (Y.J.)
- Key Laboratory of Bio-Based Polymeric Materials Technology and Application of Zhejiang Province, 1219 Zhongguan West Road, Zhenhai District, Ningbo 315201, China
| | - Yanhua Jiang
- Ningbo Institute of Materials Technology and Engineering, Chinese Academy of Sciences, 1219 Zhongguan West Road, Zhenhai District, Ningbo 315201, China; (X.F.); (X.Z.); (Z.J.); (Y.J.)
- Key Laboratory of Bio-Based Polymeric Materials Technology and Application of Zhejiang Province, 1219 Zhongguan West Road, Zhenhai District, Ningbo 315201, China
| | - Xiaoqing Liu
- Ningbo Institute of Materials Technology and Engineering, Chinese Academy of Sciences, 1219 Zhongguan West Road, Zhenhai District, Ningbo 315201, China; (X.F.); (X.Z.); (Z.J.); (Y.J.)
- Key Laboratory of Bio-Based Polymeric Materials Technology and Application of Zhejiang Province, 1219 Zhongguan West Road, Zhenhai District, Ningbo 315201, China
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13
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Polymer pollution and its solutions with special emphasis on Poly (butylene adipate terephthalate (PBAT)). Polym Bull (Berl) 2022. [DOI: 10.1007/s00289-021-04065-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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14
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Screening and characterization of novel lipase producing Bacillus species from agricultural soil with high hydrolytic activity against PBAT poly (butylene adipate co terephthalate) co-polyesters. Polym Bull (Berl) 2022. [DOI: 10.1007/s00289-021-03992-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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15
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Pokhrel S, Sigdel A, Lach R, Slouf M, Sirc J, Katiyar V, Bhattarai DR, Adhikari R. Starch-based biodegradable film with poly(butylene adipate- co-terephthalate): preparation, morphology, thermal and biodegradation properties. JOURNAL OF MACROMOLECULAR SCIENCE PART A-PURE AND APPLIED CHEMISTRY 2021. [DOI: 10.1080/10601325.2021.1920838] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- Shanta Pokhrel
- Department of Chemistry, Tri-Chandra Multiple Campus, Tribhuvan University, Kathmandu, Nepal
| | - Amrita Sigdel
- Department of Chemistry, Tri-Chandra Multiple Campus, Tribhuvan University, Kathmandu, Nepal
| | - Ralf Lach
- PolymerService GmbH Merseburg, Merseburg, Germany
| | - Miroslav Slouf
- Institute of Macromolecular Chemistry, Czech Academy of Sciences, Prague, Czech Republic
| | - Jakub Sirc
- Institute of Macromolecular Chemistry, Czech Academy of Sciences, Prague, Czech Republic
| | - Vimal Katiyar
- Department of Chemical Engineering, Indian Institute of Technology (IIT), Guwahati, India
| | - Dhruba Raj Bhattarai
- National Outreach Research Centre, Nepal Agricultural Research Council (NARC), Lalitpur, Nepal
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Jia H, Zhang M, Weng Y, Zhao Y, Li C, Kanwal A. Degradation of poly(butylene adipate-co-terephthalate) by Stenotrophomonas sp. YCJ1 isolated from farmland soil. J Environ Sci (China) 2021; 103:50-58. [PMID: 33743918 DOI: 10.1016/j.jes.2020.10.001] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Revised: 10/02/2020] [Accepted: 10/03/2020] [Indexed: 06/12/2023]
Abstract
In recent years, poly (butylene adipate-co-terephthalate) (PBAT) has been widely used. However, PBAT-degrading bacteria have rarely been reported. PBAT-degrading bacteria were isolated from farmland soil and identified. The effects of growth factors on the degradation of PBAT and the lipase activity of PBAT-degrading bacteria were assessed. The degradation mechanism was analyzed using scanning electron microscopy, attenuated total reflection Fourier transform infrared spectroscopy, proton nuclear magnetic resonance, X-ray diffraction, and liquid chromatography-mass spectrometry. The results showed that Stenotrophomonas sp. YCJ1 had a significant degrading effect on PBAT. Under certain conditions, the strain could secrete 10.53 U/mL of lipase activity and degrade 10.14 wt.% of PBAT films. The strain secreted lipase to catalyze the degradation of the ester bonds in PBAT, resulting in the production of degradation products such as terephthalic acid, 1,4-butanediol, and adipic acid. Furthermore, the degradation products could participate in the metabolism of YCJ1 as carbon sources to facilitate complete degradation of PBAT, indicating that the strain has potential value for the bioremediation of PBAT in the environment.
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Affiliation(s)
- Hao Jia
- School of Environmental Science and Engineering, Shaanxi University of Science and Technology, Xi'an 170021, China
| | - Min Zhang
- School of Environmental Science and Engineering, Shaanxi University of Science and Technology, Xi'an 170021, China.
| | - Yunxuan Weng
- Beijing Key Laboratory of Plastics Health and Safety Quality Evaluation Technology, Beijing Technology and Business University, Beijing 100048, China
| | - Yao Zhao
- School of Environmental Science and Engineering, Shaanxi University of Science and Technology, Xi'an 170021, China
| | - Chengtao Li
- School of Environmental Science and Engineering, Shaanxi University of Science and Technology, Xi'an 170021, China
| | - Aqsa Kanwal
- School of Environmental Science and Engineering, Shaanxi University of Science and Technology, Xi'an 170021, China
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17
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Han Y, Teng Y, Wang X, Ren W, Wang X, Luo Y, Zhang H, Christie P. Soil Type Driven Change in Microbial Community Affects Poly(butylene adipate- co-terephthalate) Degradation Potential. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2021; 55:4648-4657. [PMID: 33761242 DOI: 10.1021/acs.est.0c04850] [Citation(s) in RCA: 46] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
Biodegradable mulch films have been developed as a suitable alternative to conventional nondegradable polyethylene films. However, the key factors controlling the degradation speed of biodegradable mulch films in soils remain unclear. Here, we linked changes in the soil microbiome with the degradation rate of a promising biodegradable material poly(butylene adipate-co-terephthalate) (PBAT) in four soil types, a lou soil (LS), a fluvo-aquic soil (CS), a black soil (BS), and a red soil (RS), equivalent to Inceptisols (the first two soils), Mollisols, and Ultisols, using soil microcosms. The PBAT degradation rate differed with the soil type, with PBAT mineralization levels of 16, 9, 0.3, and 0.9% in LS, CS, BS, and RS, respectively, after 120 days. Metagenomic analysis showed that the microbial community in LS was more responsive to PBAT than the other three soils. PBAT hydrolase genes were significantly enriched in LS but were not significantly stimulated by PBAT in CS, BS, or RS. Several members of Proteobacteria were identified as novel potential degraders, and their enrichment extent was significantly positively correlated with PBAT degradation capacity. Overall, our results suggest that soil environments harbored a range of PBAT-degrading bacteria and the enrichment of potential degraders drives the fate of PBAT in the soils.
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Affiliation(s)
- Yujuan Han
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Ying Teng
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Xia Wang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
- University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Wenjie Ren
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Xiaomi Wang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Yongming Luo
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Huimin Zhang
- Shanghai Majorbio Bio-Pharm Technology Co., Ltd., Shanghai 201318, China
| | - Peter Christie
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
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18
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Soulenthone P, Tachibana Y, Suzuki M, Mizuno T, Ohta Y, Kasuya KI. Characterization of a poly(butylene adipate-co-terephthalate) hydrolase from the mesophilic actinobacteria Rhodococcus fascians. Polym Degrad Stab 2021. [DOI: 10.1016/j.polymdegradstab.2021.109481] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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19
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Development of microwave-assisted extraction and dispersive liquid–liquid microextraction followed by gas chromatography–mass spectrometry for the determination of organic additives in biodegradable mulch films. Microchem J 2021. [DOI: 10.1016/j.microc.2020.105722] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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20
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Characterization of a mesophilic actinobacteria that degrades poly(butylene adipate-co-terephthalate). Polym Degrad Stab 2020. [DOI: 10.1016/j.polymdegradstab.2020.109335] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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21
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Šerá J, Kadlečková M, Fayyazbakhsh A, Kučabová V, Koutný M. Occurrence and Analysis of Thermophilic Poly(butylene adipate-co-terephthalate)-Degrading Microorganisms in Temperate Zone Soils. Int J Mol Sci 2020; 21:ijms21217857. [PMID: 33113973 PMCID: PMC7660229 DOI: 10.3390/ijms21217857] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2020] [Revised: 10/16/2020] [Accepted: 10/20/2020] [Indexed: 11/16/2022] Open
Abstract
The ubiquity and character of thermophilic poly(butylene adipate-co-terephthalate) (PBAT)-degrading microorganisms in soils were investigated and compared to the process in an industrial composting plant. PBAT degraders were sought in 41 temperate zone soils. No mesophilic degraders were found by the employed method, but roughly 102 colony-forming units (CFUs) of thermophilic degraders per gram of soil were found in nine soils, and after an enrichment procedure, the PBAT-degrading consortia were isolated from 30 out of 41 soils. Thermophilic actinomycetes, Thermobispora bispora in particular, together with bacilli proved to be the key constituents of the isolated and characterized PBAT-degrading consortia, with bacilli comprising from about 30% to over 90% of the retrieved sequences. It was also shown that only consortia containing both constituents were able to decompose PBAT. For comparison, a PBAT film together with two types of PBAT/starch films were subjected to biodegradation in compost and the degrading microorganisms were analyzed. Bacilli and actinobacteria were again the most common species identified on pure PBAT film, especially at the beginning of biodegradation. Later, the composition of the consortia on all three tested materials became very similar and more diverse. Since waste containing PBAT-based materials is often intended to end up in composting plants, this study increases our confidence that thermophilic PBAT degraders are rather broadly present in the environment and the degradation of the material during the composting process should not be limited by the absence of specific microorganisms.
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Affiliation(s)
- Jana Šerá
- Department of Environmental Protection Engineering, Faculty of Technology, Tomas Bata University in Zlín, T. G. Masaryka Square 5555, 760 01 Zlín, Czech Republic; (J.Š.); (V.K.); (M.K.)
| | - Markéta Kadlečková
- Department of Physics and Materials Engineering, Faculty of Technology, Tomas Bata University in Zlín, T. G. Masaryka Square 5555, 760 01 Zlín, Czech Republic;
| | - Ahmad Fayyazbakhsh
- Department of Environmental Protection Engineering, Faculty of Technology, Tomas Bata University in Zlín, T. G. Masaryka Square 5555, 760 01 Zlín, Czech Republic; (J.Š.); (V.K.); (M.K.)
- Correspondence: ; Tel.: +420-776847-055
| | - Veronika Kučabová
- Department of Environmental Protection Engineering, Faculty of Technology, Tomas Bata University in Zlín, T. G. Masaryka Square 5555, 760 01 Zlín, Czech Republic; (J.Š.); (V.K.); (M.K.)
| | - Marek Koutný
- Department of Environmental Protection Engineering, Faculty of Technology, Tomas Bata University in Zlín, T. G. Masaryka Square 5555, 760 01 Zlín, Czech Republic; (J.Š.); (V.K.); (M.K.)
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Hirota Y, Hayashi K, Kawanishi T, Takiguchi N. Effect of pH on Hydrolysis of Biodegradable Polyethylene Terephthalate. JOURNAL OF CHEMICAL ENGINEERING OF JAPAN 2020. [DOI: 10.1252/jcej.19we182] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Yasushi Hirota
- Graduate School of Natural Science and Technology, Kanazawa University
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23
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Tesei D, Quartinello F, Guebitz GM, Ribitsch D, Nöbauer K, Razzazi-Fazeli E, Sterflinger K. Shotgun proteomics reveals putative polyesterases in the secretome of the rock-inhabiting fungus Knufia chersonesos. Sci Rep 2020; 10:9770. [PMID: 32555357 PMCID: PMC7299934 DOI: 10.1038/s41598-020-66256-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2020] [Accepted: 05/15/2020] [Indexed: 11/09/2022] Open
Abstract
Knufia chersonesos is an ascomycotal representative of black fungi, a morphological group of polyextremotolerant melanotic fungi, whose ability to resort to recalcitrant carbon sources makes it an interesting candidate for degradation purposes. A secretome screening towards polyesterases was carried out for the fungus and its non-melanized mutant, grown in presence of the synthetic copolyester Polybutylene adipate terephthalate (PBAT) as additional or sole carbon source, and resulted in the identification of 37 esterolytic and lipolytic enzymes across the established cultivation conditions. Quantitative proteomics allowed to unveil 9 proteins being constitutively expressed at all conditions and 7 which were instead detected as up-regulated by PBAT exposure. Protein functional analysis and structure prediction indicated similarity of these enzymes to microbial polyesterases of known biotechnological use such as MHETase from Ideonella sakaiensis and CalA from Candida albicans. For both strains, PBAT hydrolysis was recorded at all cultivation conditions and primarily the corresponding monomers were released, which suggests degradation to the polymer's smallest building block. The work presented here aims to demonstrate how investigations of the secretome can provide new insights into the eco-physiology of polymer degrading fungi and ultimately aid the identification of novel enzymes with potential application in polymer processing, recycling and degradation.
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Affiliation(s)
- Donatella Tesei
- Institute of Microbiology and Microbial Biotechnology, University of Natural Resources and Life Sciences, Muthgasse 18, 1190, Vienna, Austria.
| | - Felice Quartinello
- Institute of Environmental Biotechnology, University of Natural Resources and Life Sciences, Konrad Lorenz Strasse 20, 3430, Tulln, Austria
| | - Georg M Guebitz
- Institute of Environmental Biotechnology, University of Natural Resources and Life Sciences, Konrad Lorenz Strasse 20, 3430, Tulln, Austria
- Austrian Centre of Industrial Biotechnology, Konrad Lorenz Strasse 20, 3430, Tulln, Austria
| | - Doris Ribitsch
- Institute of Environmental Biotechnology, University of Natural Resources and Life Sciences, Konrad Lorenz Strasse 20, 3430, Tulln, Austria
- Austrian Centre of Industrial Biotechnology, Konrad Lorenz Strasse 20, 3430, Tulln, Austria
| | - Katharina Nöbauer
- VetCore Facility for Research, University of Veterinary Medicine, Veterinärplatz 1, 1210, Vienna, Austria
| | - Ebrahim Razzazi-Fazeli
- VetCore Facility for Research, University of Veterinary Medicine, Veterinärplatz 1, 1210, Vienna, Austria
| | - Katja Sterflinger
- Institute of Microbiology and Microbial Biotechnology, University of Natural Resources and Life Sciences, Muthgasse 18, 1190, Vienna, Austria
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Biodegradation of Poly(3-hydroxybutyrate) and Poly(3-hydroxybutyrate-co-3-hydroxyvalerate) by Newly Isolated Penicillium oxalicum SS2 in Soil Microcosms and Partial Characterization of Extracellular Depolymerase. Curr Microbiol 2020; 77:1622-1636. [DOI: 10.1007/s00284-020-01968-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2019] [Accepted: 03/25/2020] [Indexed: 11/25/2022]
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Sander M. Biodegradation of Polymeric Mulch Films in Agricultural Soils: Concepts, Knowledge Gaps, and Future Research Directions. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2019; 53:2304-2315. [PMID: 30698422 DOI: 10.1021/acs.est.8b05208] [Citation(s) in RCA: 95] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
The agricultural use of conventional, polyethylene-based mulch films leads to the accumulation of remnant film pieces in agricultural soils with negative impacts for soil productivity and ecology. A viable strategy to overcome this accumulation is to replace conventional with biodegradable mulch films composed of polymers designed to be degraded by soil microorganisms. However, understanding polymer biodegradation in soils remains a significant challenge due to its dependence on polymer properties, soil characteristics, and prevailing environmental conditions. This perspective aims to advance our understanding of the three fundamental steps underlying biodegradation of mulch films in agricultural soils: colonization of the polymer film surfaces by soil microorganisms, depolymerization of the polymer films by extracellular microbial hydrolases, and subsequent microbial assimilation and utilization of the hydrolysis products for energy production and biomass formation. The perspective synthesizes the current conceptual understanding of these steps and highlights existing knowledge gaps. The discussion addresses future research and analytical advancements required to overcome the knowledge gaps and to identify the key polymer properties and soil characteristics governing mulch film biodegradation in agricultural soils.
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Affiliation(s)
- Michael Sander
- Institute of Biogeochemistry and Pollutant Dynamics , ETH Zurich , 8092 Zurich , Switzerland
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26
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Aarthy M, Puhazhselvan P, Aparna R, George AS, Gowthaman MK, Ayyadurai N, Masaki K, Nakajima-Kambe T, Kamini NR. Growth associated degradation of aliphatic-aromatic copolyesters by Cryptococcus sp. MTCC 5455. Polym Degrad Stab 2018. [DOI: 10.1016/j.polymdegradstab.2018.03.021] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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27
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Tachibana Y, Yamahata M, Ichihara H, Kasuya KI. Biodegradability of polyesters comprising a bio-based monomer derived from furfural. Polym Degrad Stab 2017. [DOI: 10.1016/j.polymdegradstab.2017.10.001] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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28
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Nikolić MA, Gauthier E, Colwell JM, Halley P, Bottle SE, Laycock B, Truss R. The challenges in lifetime prediction of oxodegradable polyolefin and biodegradable polymer films. Polym Degrad Stab 2017. [DOI: 10.1016/j.polymdegradstab.2017.07.018] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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29
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Enzymatic degradation of poly-butylene succinate-co-adipate film in rice husks by yeast Pseudozyma antarctica in indoor conditions. J Biosci Bioeng 2017; 125:199-204. [PMID: 28958643 DOI: 10.1016/j.jbiosc.2017.08.017] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2017] [Revised: 08/16/2017] [Accepted: 08/24/2017] [Indexed: 11/22/2022]
Abstract
Agricultural mulch films made from biodegradable polymers (BP) have been used to decrease the burden of plastic waste recovery and recycling. However, their degradations depend largely on environmental conditions and sometimes do not proceed as desired. Yeast strains of Pseudozyma antarctica often isolated from rice husks were found to secrete an esterase to degrade BP films. Poly-butylene succinate-co-adipate (PBSA) films buried in unsterilized rice husks with 60% (w/w) moisture degraded rapidly compared to that buried in field soil. The type strain of P. antarctica JCM 10317 added as cell suspension onto sterilized rice husks with PBSA film grew rapidly forming filamentous growth on the surface of rice husks and films. BP-degrading enzyme secreted by the growing cells was adsorbed on the surface of film and decomposed the film. Addition of rice husk-derived P. antarctica strains also showed BP film degradation activity in sterilized rice husks. In the light of these findings, we suggest that techniques for disposal of used BPs which combine plastics with unutilized residual plant materials piled at the side of agricultural fields be developed.
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Baba T, Tachibana Y, Suda S, Kasuya KI. Evaluation of environmental degradability based on the number of methylene units in poly(butylene n-alkylenedionate). Polym Degrad Stab 2017. [DOI: 10.1016/j.polymdegradstab.2017.02.007] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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31
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Muroi F, Tachibana Y, Soulenthone P, Yamamoto K, Mizuno T, Sakurai T, Kobayashi Y, Kasuya KI. Characterization of a poly(butylene adipate- co -terephthalate) hydrolase from the aerobic mesophilic bacterium Bacillus pumilus. Polym Degrad Stab 2017. [DOI: 10.1016/j.polymdegradstab.2017.01.006] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Šerá J, Stloukal P, Jančová P, Verney V, Pekařová S, Koutný M. Accelerated Biodegradation of Agriculture Film Based on Aromatic-Aliphatic Copolyester in Soil under Mesophilic Conditions. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2016; 64:5653-5661. [PMID: 27367168 DOI: 10.1021/acs.jafc.6b01786] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
A study was conducted on the biodegradation of aromatic-aliphatic copolyester-based agricultural film in soil at 25 °C. The polymer is known to be biodegradable under composting conditions although rather recalcitrant under mesophilic conditions. The material investigated comprised of the copolyester filled with approximately 25% of starch containing biodegradable plasticizers, and its behavior was compared to the corresponding material without the filler. Mineralization followed by CO2 production merely reached the point of about 6% after 100 days of incubation in the pure copolyester film, whereas the value of around 53% was recorded for the filled copolyester film, which exceeded the readily biodegradable starch filler content in the material by more than 20% and could be accounted for biodegradation of the copolyester. It was suggested that the accelerated copolyester biodegradation in the starch-filled material was most likely explained by the increase in the active surface area of the material available for the microbial attack after biodegradation of the filler. The results were supported by changes in molecular weight distributions of the copolyester and observations made by several microscopic techniques. These findings encourage further development of biodegradable agricultural films based on this material.
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Affiliation(s)
| | | | | | - Vincent Verney
- Institut de Chimie de Clermont-Ferrand (ICCF), UMR 6296, Blaise Pascal University , 63177 Aubière, France
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Muroi F, Tachibana Y, Kobayashi Y, Sakurai T, Kasuya KI. Influences of poly(butylene adipate-co-terephthalate) on soil microbiota and plant growth. Polym Degrad Stab 2016. [DOI: 10.1016/j.polymdegradstab.2016.05.018] [Citation(s) in RCA: 42] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Moon J, Kim MY, Kim BM, Lee JC, Choi MC, Kim JR. Estimation of the Microbial Degradation of Biodegradable Polymer, Poly(lactic acid) (PLA) with a Specific Gas Production Rate. Macromol Res 2016. [DOI: 10.1007/s13233-016-4060-2] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Perz V, Bleymaier K, Sinkel C, Kueper U, Bonnekessel M, Ribitsch D, Guebitz GM. Substrate specificities of cutinases on aliphatic–aromatic polyesters and on their model substrates. N Biotechnol 2016; 33:295-304. [DOI: 10.1016/j.nbt.2015.11.004] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2015] [Revised: 10/30/2015] [Accepted: 11/06/2015] [Indexed: 01/25/2023]
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Hsieh WC, Chen GC, Sung CC, Kasuya KI, Tachibana Y, Chen CH, Chen M, Ling TR, Chang CP. Thermolability, enzymatic degradation and aminolysis of solution-grown single crystals of novel poly(ethylene succinate-co-5mol% trimethylene succinate)s. JOURNAL OF POLYMER RESEARCH 2015. [DOI: 10.1007/s10965-015-0857-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Wang H, Wei D, Zheng A, Xiao H. Soil burial biodegradation of antimicrobial biodegradable PBAT films. Polym Degrad Stab 2015. [DOI: 10.1016/j.polymdegradstab.2015.03.007] [Citation(s) in RCA: 74] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Yamamoto-Tamura K, Hiradate S, Watanabe T, Koitabashi M, Sameshima-Yamashita Y, Yarimizu T, Kitamoto H. Contribution of soil esterase to biodegradation of aliphatic polyester agricultural mulch film in cultivated soils. AMB Express 2015; 5:10. [PMID: 25852987 PMCID: PMC4384995 DOI: 10.1186/s13568-014-0088-x] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2014] [Accepted: 12/20/2014] [Indexed: 11/10/2022] Open
Abstract
The relationship between degradation speed of soil-buried biodegradable polyester film in a farmland and the characteristics of the predominant polyester-degrading soil microorganisms and enzymes were investigated to determine the BP-degrading ability of cultivated soils through characterization of the basal microbial activities and their transition in soils during BP film degradation. Degradation of poly(butylene succinate-co-adipate) (PBSA) film was evaluated in soil samples from different cultivated fields in Japan for 4 weeks. Both the degradation speed of the PBSA film and the esterase activity were found to be correlated with the ratio of colonies that produced clear zone on fungal minimum medium-agarose plate with emulsified PBSA to the total number colonies counted. Time-dependent change in viable counts of the PBSA-degrading fungi and esterase activities were monitored in soils where buried films showed the most and the least degree of degradation. During the degradation of PBSA film, the viable counts of the PBSA-degrading fungi and the esterase activities in soils, which adhered to the PBSA film, increased with time. The soil, where the film was degraded the fastest, recorded large PBSA-degrading fungal population and showed high esterase activity compared with the other soil samples throughout the incubation period. Meanwhile, esterase activity and viable counts of PBSA-degrading fungi were found to be stable in soils without PBSA film. These results suggest that the higher the distribution ratio of native PBSA-degrading fungi in the soil, the faster the film degradation is. This could be due to the rapid accumulation of secreted esterases in these soils.
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Brodhagen M, Peyron M, Miles C, Inglis DA. Biodegradable plastic agricultural mulches and key features of microbial degradation. Appl Microbiol Biotechnol 2014; 99:1039-56. [DOI: 10.1007/s00253-014-6267-5] [Citation(s) in RCA: 88] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2014] [Accepted: 11/27/2014] [Indexed: 10/24/2022]
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Shah AA, Kato S, Shintani N, Kamini NR, Nakajima-Kambe T. Microbial degradation of aliphatic and aliphatic-aromatic co-polyesters. Appl Microbiol Biotechnol 2014; 98:3437-47. [DOI: 10.1007/s00253-014-5558-1] [Citation(s) in RCA: 104] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2013] [Revised: 01/18/2014] [Accepted: 01/20/2014] [Indexed: 01/13/2023]
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Suzuki K, Noguchi MT, Shinozaki Y, Koitabashi M, Sameshima-Yamashita Y, Yoshida S, Fujii T, Kitamoto HK. Purification, characterization, and cloning of the gene for a biodegradable plastic-degrading enzyme from Paraphoma-related fungal strain B47-9. Appl Microbiol Biotechnol 2014; 98:4457-65. [PMID: 24384748 DOI: 10.1007/s00253-013-5454-0] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2013] [Revised: 12/02/2013] [Accepted: 12/05/2013] [Indexed: 11/28/2022]
Abstract
Paraphoma-related fungal strain B47-9 secreted a biodegradable plastic (BP)-degrading enzyme which amounted to 68 % (w/w) of the total secreted proteins in a culture medium containing emulsified poly(butylene succinate-co-adipate) (PBSA) as sole carbon source. The gene for this enzyme was found to be composed of an open reading frame consisting of 681 nucleotides encoding 227 amino acids and two introns. Southern blot analysis showed that this gene exists as a single copy. The deduced amino acid sequence suggested that this enzyme belongs to the cutinase (E.C.3.1.1.74) family; thus, it was named P araphoma-related fungus cutinase-like enzyme (PCLE). It degraded various types of BP films, such as poly(butylene succinate), PBSA, poly(butylene adipate-co-terephthalate), poly(ε-caprolactone), and poly(DL-lactic acid). It has a molecular mass of 19.7 kDa, and an optimum pH and temperature for degradation of emulsified PBSA of 7.2 and 45 °C, respectively. Ca(2+) ion at a concentration of about 1.0 mM markedly enhanced the degradation of emulsified PBSA.
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Affiliation(s)
- Ken Suzuki
- National Institute for Agro-Environmental Sciences (NIAES), 3-1-3 Kannondai, Tsukuba, Ibaraki, 305-8604, Japan
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Degradation of aliphatic and aliphatic–aromatic co-polyesters by depolymerases from Roseateles depolymerans strain TB-87 and analysis of degradation products by LC-MS. Polym Degrad Stab 2013. [DOI: 10.1016/j.polymdegradstab.2013.10.003] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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43
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Wu CS. Assessing feasibility of promoting fertilizer utilization facilitated by controlled release of bacteria-encapsulated film bag. Des Monomers Polym 2013. [DOI: 10.1080/15685551.2012.747146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022] Open
Affiliation(s)
- Chin-San Wu
- a Department of Chemical and Biochemical Engineering , Kao Yuan University , Kaohsiung County , Taiwan , 82101 , Republic of China
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Affinity purification and characterization of a biodegradable plastic-degrading enzyme from a yeast isolated from the larval midgut of a stag beetle, Aegus laevicollis. Appl Microbiol Biotechnol 2012; 97:7679-88. [DOI: 10.1007/s00253-012-4595-x] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2012] [Revised: 11/09/2012] [Accepted: 11/13/2012] [Indexed: 11/26/2022]
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45
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Wu CS. Utilization of peanut husks as a filler in aliphatic–aromatic polyesters: Preparation, characterization, and biodegradability. Polym Degrad Stab 2012. [DOI: 10.1016/j.polymdegradstab.2012.07.027] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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46
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Koitabashi M, Noguchi MT, Sameshima-Yamashita Y, Hiradate S, Suzuki K, Yoshida S, Watanabe T, Shinozaki Y, Tsushima S, Kitamoto HK. Degradation of biodegradable plastic mulch films in soil environment by phylloplane fungi isolated from gramineous plants. AMB Express 2012; 2:40. [PMID: 22856640 PMCID: PMC3444367 DOI: 10.1186/2191-0855-2-40] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2012] [Accepted: 07/18/2012] [Indexed: 11/27/2022] Open
Abstract
To improve the biodegradation of biodegradable plastic (BP) mulch films, 1227 fungal strains were isolated from plant surface (phylloplane) and evaluated for BP-degrading ability. Among them, B47-9 a strain isolated from the leaf surface of barley showed the strongest ability to degrade poly-(butylene succinate-co-butylene adipate) (PBSA) and poly-(butylene succinate) (PBS) films. The strain grew on the surface of soil-mounted BP films, produced breaks along the direction of hyphal growth indicated that it secreted a BP-degrading enzyme, and has directly contributing to accelerating the degradation of film. Treatment with the culture filtrate decomposed 91.2 wt%, 23.7 wt%, and 14.6 wt% of PBSA, PBS, and commercially available BP polymer blended mulch film, respectively, on unsterlized soil within 6 days. The PCR-DGGE analysis of the transition of soil microbial community during film degradation revealed that the process was accompanied with drastic changes in the population of soil fungi and Acantamoeba spp., as well as the growth of inoculated strain B47-9. It has a potential for application in the development of an effective method for accelerating degradation of used plastics under actual field conditions.
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Silva BDS, Ulhoa CJ, Batista KA, Yamashita F, Fernandes KF. Potential fungal inhibition by immobilized hydrolytic enzymes from Trichoderma asperellum. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2011; 59:8148-8154. [PMID: 21726085 DOI: 10.1021/jf2009815] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
The use of cell wall degrading enzymes from Trichoderma asperellum immobilized on biodegradable support is an alternative for food packaging. In this study, hydrolytic enzymes produced by T. asperellum were tested as a fungal growth inhibitor, in free form or immobilized on a biodegradable film composed of cassava starch and poly(butylene adipate-co-terephtalate) (PBAT). The inhibitory activity was tested against Aspergillus niger , Penicillium sp., and Sclerotinia sclerotiorum , microorganisms that frequently degrade food packaging. The use of chitin as carbon source in liquid medium induced T. asperellun to produce N-acetylglucosaminidase, β-1,3-glucanase, chitinase, and protease. The presence of T. asperellun cell wall degradating enzymes (T-CWD) immobilized by adsorption or covalent attachment resulted in effective inhibition of fungal growth. The enzymatic activity of T-CWD was stronger on S. sclerotiorum than on the Aspergillus or Penicillum isolates tested. These results suggest that T-CWD can be used in a free or immobilized form to suppress fungi that degrade food packaging.
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Affiliation(s)
- Bárbara Dumas S Silva
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal de Goiás, Goiânia, GO, Brazil
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Kijchavengkul T, Auras R, Rubino M, Selke S, Ngouajio M, Fernandez RT. Biodegradation and hydrolysis rate of aliphatic aromatic polyester. Polym Degrad Stab 2010. [DOI: 10.1016/j.polymdegradstab.2010.07.018] [Citation(s) in RCA: 207] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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