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Svirelis J, Adali Z, Emilsson G, Medin J, Andersson J, Vattikunta R, Hulander M, Järlebark J, Kolman K, Olsson O, Sakiyama Y, Lim RYH, Dahlin A. Stable trapping of multiple proteins at physiological conditions using nanoscale chambers with macromolecular gates. Nat Commun 2023; 14:5131. [PMID: 37612271 PMCID: PMC10447545 DOI: 10.1038/s41467-023-40889-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2023] [Accepted: 08/11/2023] [Indexed: 08/25/2023] Open
Abstract
The possibility to detect and analyze single or few biological molecules is very important for understanding interactions and reaction mechanisms. Ideally, the molecules should be confined to a nanoscale volume so that the observation time by optical methods can be extended. However, it has proven difficult to develop reliable, non-invasive trapping techniques for biomolecules under physiological conditions. Here we present a platform for long-term tether-free (solution phase) trapping of proteins without exposing them to any field gradient forces. We show that a responsive polymer brush can make solid state nanopores switch between a fully open and a fully closed state with respect to proteins, while always allowing the passage of solvent, ions and small molecules. This makes it possible to trap a very high number of proteins (500-1000) inside nanoscale chambers as small as one attoliter, reaching concentrations up to 60 gL-1. Our method is fully compatible with parallelization by imaging arrays of nanochambers. Additionally, we show that enzymatic cascade reactions can be performed with multiple native enzymes under full nanoscale confinement and steady supply of reactants. This platform will greatly extend the possibilities to optically analyze interactions involving multiple proteins, such as the dynamics of oligomerization events.
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Affiliation(s)
- Justas Svirelis
- Department of Chemistry and Chemical Engineering, Chalmers University of Technology, 41296, Gothenburg, Sweden
| | - Zeynep Adali
- Department of Chemistry and Chemical Engineering, Chalmers University of Technology, 41296, Gothenburg, Sweden
| | - Gustav Emilsson
- Department of Chemistry and Chemical Engineering, Chalmers University of Technology, 41296, Gothenburg, Sweden
| | - Jesper Medin
- Department of Chemistry and Chemical Engineering, Chalmers University of Technology, 41296, Gothenburg, Sweden
| | - John Andersson
- Department of Chemistry and Chemical Engineering, Chalmers University of Technology, 41296, Gothenburg, Sweden
| | - Radhika Vattikunta
- Department of Chemistry and Chemical Engineering, Chalmers University of Technology, 41296, Gothenburg, Sweden
| | - Mats Hulander
- Department of Chemistry and Chemical Engineering, Chalmers University of Technology, 41296, Gothenburg, Sweden
| | - Julia Järlebark
- Department of Chemistry and Chemical Engineering, Chalmers University of Technology, 41296, Gothenburg, Sweden
| | - Krzysztof Kolman
- Department of Chemistry and Chemical Engineering, Chalmers University of Technology, 41296, Gothenburg, Sweden
| | - Oliver Olsson
- Department of Chemistry and Chemical Engineering, Chalmers University of Technology, 41296, Gothenburg, Sweden
| | - Yusuke Sakiyama
- Biozentrum and the Swiss Nanoscience Institute, University of Basel, 4056, Basel, Switzerland
| | - Roderick Y H Lim
- Biozentrum and the Swiss Nanoscience Institute, University of Basel, 4056, Basel, Switzerland
| | - Andreas Dahlin
- Department of Chemistry and Chemical Engineering, Chalmers University of Technology, 41296, Gothenburg, Sweden.
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Flejszar M, Chmielarz P, Gießl M, Wolski K, Smenda J, Zapotoczny S, Cölfen H. A new opportunity for the preparation of PEEK-based bone implant materials: From SARA ATRP to photo-ATRP. POLYMER 2022. [DOI: 10.1016/j.polymer.2022.124587] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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3
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Baliś A, Wolski K, Zapotoczny S. Thermoresponsive Polymer Gating System on Mesoporous Shells of Silica Particles Serving as Smart Nanocontainers. Polymers (Basel) 2020; 12:E888. [PMID: 32290489 PMCID: PMC7240617 DOI: 10.3390/polym12040888] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2020] [Revised: 04/06/2020] [Accepted: 04/08/2020] [Indexed: 01/12/2023] Open
Abstract
Spherical silica nanoparticles with solid cores and mesoporous shells (SCMS) were decorated with thermoresponsive polymer brushes that were shown to serve as macromolecular valves to control loading and unloading of a model dye within the mesopores. Thermoresponsive poly(N-isopropylacrylamide) (PNIPAM) brushes were grafted from the surfaces of both solid core (SC) and SCMS particles of similar size using surface-initiated atom transfer radical polymerization. Both systems based on porous (SCMS-PNIPAM) and nonporous (SC-PNIPAM) particles were characterized using cryo-TEM, thermogravimetry and elemental analysis to determine the structure and composition of the decorated nanoparticles. The grafted PNIPAM brushes were found to be responsive to temperature changes enabling temperature-controlled gating of the pores. The processes of loading and unloading in the obtained systems were examined using a model fluorescent dye-rhodamine 6G. Polymer brushes in SCMS-PNIPAM systems were shown to serve as molecular valves enabling significant adsorption (loading) of the dye inside the pores with respect to the SC-PNIPAM (no pores) and SCMS (no valves) systems. The effective unloading of the fluorescent cargo molecules from the decorated nanoparticles was achieved in a water/methanol solution. The obtained SCMS-PNIPAM particles may be used as smart nanocontainers or nanoreactors offering also facile isolation from the suspension due to the presence of dense cores.
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Affiliation(s)
| | | | - Szczepan Zapotoczny
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Krakow, Poland; (A.B.); (K.W.)
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Park G, Jung Y. Many-chain effects on the co-nonsolvency of polymer brushes in a good solvent mixture. SOFT MATTER 2019; 15:7968-7980. [PMID: 31545330 DOI: 10.1039/c9sm01123d] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Polymer brushes normally swell in a good solvent and collapse in a poor solvent. An abnormal response of polymer brushes, so-called co-nonsolvency, is the phenomenon where the brush counter-intuitively collapses in a good solvent mixture. In this work, we employed molecular dynamics simulations to investigate the structural properties of the grafted polymers in the occurrence of co-nonsolvency. Brushes with various grafting densities were considered to study the effect of topologically excluded volumes on the co-nonsolvency. We found that the brush height follows a novel scaling behavior of the grafting density h ∼ σg0.71 in the co-nonsolvent mixture. Using the scaling exponent and Alexander-de Gennes theory, an analytic function that predicts the monomer density was obtained. The many-chain effects in the co-nonsolvent lead to the formation of both intermolecular and intramolecular bridging structures. Increasing the grafting density entails lower looping events occuring because of the intermolcular bridging, causing diverse structural properties. We report how the average thickness, the polymer orientation, and the looping probability vary as the grafting density increases. Based on these observations, we constructed a phase diagram of the polymer brush system using the average thickness and orientation as order parameters. Our simulations and analytical results reveal the nature of co-nonsolvency in polymer brushes in an explicit way and will help to provide practical guidelines for applications such as drug delivery and sensor devices.
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Affiliation(s)
- Gyehyun Park
- Department of Chemistry, Seoul National University, Seoul 08826, Korea.
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5
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Gruszkiewicz A, Słowikowska M, Grześ G, Wójcik A, Rokita J, Fiocco A, Wytrwal-Sarna M, Marzec M, Trzebicka B, Kopeć M, Wolski K, Zapotoczny S. Enhancement of the growth of polymer brushes via ATRP initiated from ions-releasing indium tin oxide substrates. Eur Polym J 2019. [DOI: 10.1016/j.eurpolymj.2018.11.004] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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Pomorska A, Wolski K, Wytrwal-Sarna M, Bernasik A, Zapotoczny S. Polymer brushes grafted from nanostructured zinc oxide layers – Spatially controlled decoration of nanorods. Eur Polym J 2019. [DOI: 10.1016/j.eurpolymj.2019.01.012] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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Mandal J, Simic R, Spencer ND. Tuning and in situ monitoring of surface-initiated, atom-transfer radical polymerization of acrylamide derivatives in water-based solvents. Polym Chem 2019. [DOI: 10.1039/c9py00587k] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
SI-ATRP kinetics of acrylamide derivatives is studied in situ using a quartz crystal microbalance with dissipation (QCM-D). The effect of growth kinetics on polymer-brush dispersity have been examined using colloidal-probe atomic force microscopy.
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Affiliation(s)
- Joydeb Mandal
- Laboratory for Surface Science and Technology
- Department of Materials
- ETH Zurich
- CH-8093 Zurich
- Switzerland
| | - Rok Simic
- Laboratory for Surface Science and Technology
- Department of Materials
- ETH Zurich
- CH-8093 Zurich
- Switzerland
| | - Nicholas D. Spencer
- Laboratory for Surface Science and Technology
- Department of Materials
- ETH Zurich
- CH-8093 Zurich
- Switzerland
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Schulz AS, Gojzewski H, Huskens J, Vos WL, Julius Vancso G. Controlled sub-10-nanometer poly(N
-isopropyl-acrylamide) layers grafted from silicon by atom transfer radical polymerization. POLYM ADVAN TECHNOL 2017. [DOI: 10.1002/pat.4187] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Andreas S. Schulz
- Materials Science and Technology of Polymers (MTP), MESA+ Institute for Nanotechnology; University of Twente; PO Box 217 7500 AE Enschede The Netherlands
- Molecular NanoFabrication (MNF), MESA+ Institute for Nanotechnology; University of Twente; PO Box 217 7500 AE Enschede The Netherlands
- Complex Photonic Systems (COPS), MESA+ Institute for Nanotechnology; University of Twente; PO Box 217 7500 AE Enschede The Netherlands
| | - Hubert Gojzewski
- Materials Science and Technology of Polymers (MTP), MESA+ Institute for Nanotechnology; University of Twente; PO Box 217 7500 AE Enschede The Netherlands
| | - Jurriaan Huskens
- Molecular NanoFabrication (MNF), MESA+ Institute for Nanotechnology; University of Twente; PO Box 217 7500 AE Enschede The Netherlands
| | - Willem L. Vos
- Complex Photonic Systems (COPS), MESA+ Institute for Nanotechnology; University of Twente; PO Box 217 7500 AE Enschede The Netherlands
| | - G. Julius Vancso
- Materials Science and Technology of Polymers (MTP), MESA+ Institute for Nanotechnology; University of Twente; PO Box 217 7500 AE Enschede The Netherlands
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