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Svirelis J, Adali Z, Emilsson G, Medin J, Andersson J, Vattikunta R, Hulander M, Järlebark J, Kolman K, Olsson O, Sakiyama Y, Lim RYH, Dahlin A. Stable trapping of multiple proteins at physiological conditions using nanoscale chambers with macromolecular gates. Nat Commun 2023; 14:5131. [PMID: 37612271 PMCID: PMC10447545 DOI: 10.1038/s41467-023-40889-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2023] [Accepted: 08/11/2023] [Indexed: 08/25/2023] Open
Abstract
The possibility to detect and analyze single or few biological molecules is very important for understanding interactions and reaction mechanisms. Ideally, the molecules should be confined to a nanoscale volume so that the observation time by optical methods can be extended. However, it has proven difficult to develop reliable, non-invasive trapping techniques for biomolecules under physiological conditions. Here we present a platform for long-term tether-free (solution phase) trapping of proteins without exposing them to any field gradient forces. We show that a responsive polymer brush can make solid state nanopores switch between a fully open and a fully closed state with respect to proteins, while always allowing the passage of solvent, ions and small molecules. This makes it possible to trap a very high number of proteins (500-1000) inside nanoscale chambers as small as one attoliter, reaching concentrations up to 60 gL-1. Our method is fully compatible with parallelization by imaging arrays of nanochambers. Additionally, we show that enzymatic cascade reactions can be performed with multiple native enzymes under full nanoscale confinement and steady supply of reactants. This platform will greatly extend the possibilities to optically analyze interactions involving multiple proteins, such as the dynamics of oligomerization events.
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Affiliation(s)
- Justas Svirelis
- Department of Chemistry and Chemical Engineering, Chalmers University of Technology, 41296, Gothenburg, Sweden
| | - Zeynep Adali
- Department of Chemistry and Chemical Engineering, Chalmers University of Technology, 41296, Gothenburg, Sweden
| | - Gustav Emilsson
- Department of Chemistry and Chemical Engineering, Chalmers University of Technology, 41296, Gothenburg, Sweden
| | - Jesper Medin
- Department of Chemistry and Chemical Engineering, Chalmers University of Technology, 41296, Gothenburg, Sweden
| | - John Andersson
- Department of Chemistry and Chemical Engineering, Chalmers University of Technology, 41296, Gothenburg, Sweden
| | - Radhika Vattikunta
- Department of Chemistry and Chemical Engineering, Chalmers University of Technology, 41296, Gothenburg, Sweden
| | - Mats Hulander
- Department of Chemistry and Chemical Engineering, Chalmers University of Technology, 41296, Gothenburg, Sweden
| | - Julia Järlebark
- Department of Chemistry and Chemical Engineering, Chalmers University of Technology, 41296, Gothenburg, Sweden
| | - Krzysztof Kolman
- Department of Chemistry and Chemical Engineering, Chalmers University of Technology, 41296, Gothenburg, Sweden
| | - Oliver Olsson
- Department of Chemistry and Chemical Engineering, Chalmers University of Technology, 41296, Gothenburg, Sweden
| | - Yusuke Sakiyama
- Biozentrum and the Swiss Nanoscience Institute, University of Basel, 4056, Basel, Switzerland
| | - Roderick Y H Lim
- Biozentrum and the Swiss Nanoscience Institute, University of Basel, 4056, Basel, Switzerland
| | - Andreas Dahlin
- Department of Chemistry and Chemical Engineering, Chalmers University of Technology, 41296, Gothenburg, Sweden.
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Vattikunta R, Venkatakrishnarao D, Sahoo C, Naraharisetty SRG, Narayana Rao D, Müllen K, Chandrasekar R. Photonic Microresonators from Charge Transfer in Polymer Particles: Toward Enhanced and Tunable Two-Photon Emission. ACS Appl Mater Interfaces 2018; 10:16723-16730. [PMID: 29683311 DOI: 10.1021/acsami.8b01600] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Novel photonic microresonators with enhanced nonlinear optical (NLO) intensity are fabricated from polymer particles. As an additional advantage, they offer band gap tunability from the visible to near-infrared regions. A special protocol including (i) copolymerization of 4-(1-pyrenyl)-styrene, styrene, and 1,4-divinylbenzene, (ii) extraction of a dispersible and partly dissolvable, lightly cross-linked polymer network (PN), and (iii) treatment of the blue-emitting PN with electron acceptor (A) molecules such as 1,2,4,5-tetracyanobenzene (TCNB) and 7,7,8,8-tetracyanoquinodimethane (TCNQ) furnishes orange- and red-emitting D-A charge-transfer (CT) complexes with the pendant pyrene units. These complexes, here named PN-TCNB and PN-TCNQ, respectively, precipitate as microparticles upon the addition of water and subsequent ultrasonication. Upon electronic excitation, these spherical microparticles act as whispering-gallery-mode resonators by displaying optical resonances in the photoluminescence (PL) spectra because of light confinement. Further, the trapped incident light increases the light-matter interaction and thereby enhances the PL intensity, including the two-photon luminescence. The described protocol for polymer-based CT microresonators with tunable NLO emissions holds promise for a myriad of photonic applications.
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Affiliation(s)
| | | | | | | | | | - Klaus Müllen
- Max Planck Institute for Polymer Research , Ackermannweg 10 , D-55218 Mainz , Germany
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Vattikunta R, Venkatakrishnarao D, Mohiddon MA, Chandrasekar R. Self-Assembly of “Chalcone” Type Push-Pull Dye Molecules into Organic Single Crystalline Microribbons and Rigid Microrods for Vis/NIR Range Photonic Cavity Applications. Chemphyschem 2016; 17:3435-3441. [DOI: 10.1002/cphc.201600756] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2016] [Indexed: 11/08/2022]
Affiliation(s)
- Radhika Vattikunta
- Functional Molecular Nano/Micro Solids Laboratory; School of Chemistry; University of Hyderabad, Gachibowli; Hyderabad 500046, Telangana India
| | - Dasari Venkatakrishnarao
- Functional Molecular Nano/Micro Solids Laboratory; School of Chemistry; University of Hyderabad, Gachibowli; Hyderabad 500046, Telangana India
| | - Mahamad Ahamad Mohiddon
- Department of Science and Humanities; National Institute of Technology, Tadepalligudem; 534101 Andhra Pradesh India
| | - Rajadurai Chandrasekar
- Functional Molecular Nano/Micro Solids Laboratory; School of Chemistry; University of Hyderabad, Gachibowli; Hyderabad 500046, Telangana India
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