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Sánchez-Sánchez C, Aranda-Medina M, Rodríguez A, Hernández A, Córdoba MG, Cuadros-Blázquez F, Ruiz-Moyano S. Development of real-time PCR methods for the quantification of Methanoculleus, Methanosarcina and Methanobacterium in anaerobic digestion. J Microbiol Methods 2022; 199:106529. [PMID: 35772572 DOI: 10.1016/j.mimet.2022.106529] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2022] [Revised: 06/18/2022] [Accepted: 06/22/2022] [Indexed: 12/27/2022]
Abstract
Anaerobic digestion is a growing technology to manage organic waste and produce bioenergy. To promote this technology, it is essential to know, at the molecular level, the dynamics of microbial communities, specifically the methanogenic community. In the present study, three primer pairs were selected from seven primer pairs which were designed and tested with different concentrations and conditions to detect Methanosarcina, Methanoculleus and Methanobacterium by real-time PCR based on the SYBR Green System. The functionality of the developed methods was demonstrated by the high linear relationship of the standard curves, and the specificity of each primer was empirically verified by testing DNA isolated from methane-producing and non-producing strains. These assays also exhibited good repeatability and reproducibility, which indicates the robustness of the methods. The described primers were successfully used to investigate the methanogenic communities of 10 samples from an anaerobic co-digestion. The genus Methanosarcina was the dominant methanogenic group.
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Affiliation(s)
- Consolación Sánchez-Sánchez
- Departamento de Física Aplicada, Escuela de Ingenierías Agrarias, Universidad de Extremadura, Avda, de Adolfo Suárez S/n, 06007 Badajoz, Spain
| | - Mercedes Aranda-Medina
- Expresión Gráfica, Escuela de Ingenierías Industriales, Campus Universitario, Avda de Elvas sn, 06006 Badajoz, Spain
| | - Alicia Rodríguez
- Instituto Universitario de Investigación de Recursos Agrarios (INURA), Escuela de Ingenierías Agrarias, Universidad de Extremadura, Avda. Adolfo Suarez, s/n, 06071 Badajoz, Spain.
| | - Alejandro Hernández
- Instituto Universitario de Investigación de Recursos Agrarios (INURA), Escuela de Ingenierías Agrarias, Universidad de Extremadura, Avda. Adolfo Suarez, s/n, 06071 Badajoz, Spain
| | - María G Córdoba
- Instituto Universitario de Investigación de Recursos Agrarios (INURA), Escuela de Ingenierías Agrarias, Universidad de Extremadura, Avda. Adolfo Suarez, s/n, 06071 Badajoz, Spain
| | - Francisco Cuadros-Blázquez
- Departamento de Física Aplicada, Escuela de Ingenierías Agrarias, Universidad de Extremadura, Avda, de Adolfo Suárez S/n, 06007 Badajoz, Spain
| | - Santiago Ruiz-Moyano
- Instituto Universitario de Investigación de Recursos Agrarios (INURA), Escuela de Ingenierías Agrarias, Universidad de Extremadura, Avda. Adolfo Suarez, s/n, 06071 Badajoz, Spain
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Iltchenco J, Peruzzo V, Eva Magrini F, Marconatto L, Paula Torres A, Luiz Beal L, Paesi S. Microbiota profile in mesophilic biodigestion of sugarcane vinasse in batch reactors. WATER SCIENCE AND TECHNOLOGY : A JOURNAL OF THE INTERNATIONAL ASSOCIATION ON WATER POLLUTION RESEARCH 2021; 84:2028-2039. [PMID: 34695028 DOI: 10.2166/wst.2021.375] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
The vinasse is a residue of ethanol production with the potential for methane production, requiring an allochthonous inoculum. Several microorganisms act in the different phases of anaerobic digestion, and the identification of these microbial communities is essential to optimize the process. The characterization of the microbiota involved in the biodigestion of vinasse was observed in the initial stage (IS), at the peak of methane production (MS) and the end of the process (FS) of the best performance assay by high-throughput sequencing. The highest methane production was 0.78 mmolCH4.gVS.h-1 at 243.7 h in the substrate/inoculum ratio of 1.7, with consumption partial of acetic, propionic and isobutyric acids and an 82% reduction of chemical oxygen demand. High microbial diversity was found. The genera Clostridium, Acinetobacter, Candidatus Cloacamonas, Bacteroides, Syntrophomonas, Kosmotoga, the family Porphyromonadaceae and the class Bacteroidia were the most abundant in the maximum methane production. Methane production was driven by Methanobacterium and Methanosaeta, suggesting the metabolic pathways used were hydrogenotrophic and acetoclastic.
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Affiliation(s)
- Janaina Iltchenco
- University of Caxias do Sul, Molecular Diagnostic Laboratory, Caxias do Sul, Brazil E-mail:
| | - Vanessa Peruzzo
- University of Caxias do Sul, Environmental Technologies Laboratory, Caxias do Sul, Brazil
| | - Flaviane Eva Magrini
- University of Caxias do Sul, Molecular Diagnostic Laboratory, Caxias do Sul, Brazil E-mail:
| | - Letícia Marconatto
- Pontifical Catholic University of Rio Grande do Sul, Institute of Petroleum and Natural Resources, Porto Alegre, Brazil
| | - Ana Paula Torres
- PETROBRAS, Research and Development Center Leopoldo Américo Miguez de Mello - CENPES, Rio de Janeiro, Brazil
| | - Lademir Luiz Beal
- University of Caxias do Sul, Environmental Technologies Laboratory, Caxias do Sul, Brazil
| | - Suelen Paesi
- University of Caxias do Sul, Molecular Diagnostic Laboratory, Caxias do Sul, Brazil E-mail:
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Ghosh P, Kumar M, Kapoor R, Kumar SS, Singh L, Vijay V, Vijay VK, Kumar V, Thakur IS. Enhanced biogas production from municipal solid waste via co-digestion with sewage sludge and metabolic pathway analysis. BIORESOURCE TECHNOLOGY 2020; 296:122275. [PMID: 31683109 DOI: 10.1016/j.biortech.2019.122275] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2019] [Revised: 10/09/2019] [Accepted: 10/15/2019] [Indexed: 06/10/2023]
Abstract
The present study intends to evaluate the potential of co-digestion for utilizing Organic fraction of Municipal Solid Waste (OFMSW) and sewage sludge (SS) for enhanced biogas production. Metagenomic analysis was performed to identify the dominant bacteria, archaea and fungi, changes in their communities with time and their functional roles during the course of anaerobic digestion (AD). The cumulative biogas yield of 586.2 mL biogas/gVS with the highest methane concentration of 69.5% was observed under an optimum ratio of OFMSW:SS (40:60 w/w). Bacteria and fungi were found to be majorly involved in hydrolysis and initial stages of AD. Probably, the most common archaea Methanosarsina sp. primarily followed the acetoclastic pathway. The hydrogenotrophic pathway was less followed as indicated by the reduction in abundance of syntrophic acetate oxidizers. An adequate understanding of microbial communities is important to manipulate and inoculate the specific microbial consortia to maximize CH4 production through AD.
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Affiliation(s)
- Pooja Ghosh
- Centre for Rural Development and Technology, Indian Institute of Technology, New Delhi 110016, India.
| | - Madan Kumar
- Centre for Rural Development and Technology, Indian Institute of Technology, New Delhi 110016, India
| | - Rimika Kapoor
- Centre for Rural Development and Technology, Indian Institute of Technology, New Delhi 110016, India
| | - Smita S Kumar
- Centre for Rural Development and Technology, Indian Institute of Technology, New Delhi 110016, India
| | - Lakhveer Singh
- Faculty of Civil and Environmental Engineering, University Malaysia Pahang, Kuantan 26300, Malaysia
| | - Vandit Vijay
- Centre for Rural Development and Technology, Indian Institute of Technology, New Delhi 110016, India
| | - Virendra Kumar Vijay
- Centre for Rural Development and Technology, Indian Institute of Technology, New Delhi 110016, India
| | - Vivek Kumar
- Centre for Rural Development and Technology, Indian Institute of Technology, New Delhi 110016, India
| | - Indu Shekhar Thakur
- School of Environmental Sciences, Jawaharlal Nehru University, New Delhi 110067, India
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Doloman A, Soboh Y, Walters AJ, Sims RC, Miller CD. Qualitative Analysis of Microbial Dynamics during Anaerobic Digestion of Microalgal Biomass in a UASB Reactor. Int J Microbiol 2017; 2017:5291283. [PMID: 29259629 PMCID: PMC5702946 DOI: 10.1155/2017/5291283] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2017] [Revised: 09/04/2017] [Accepted: 09/10/2017] [Indexed: 11/18/2022] Open
Abstract
Anaerobic digestion (AD) is a microbiologically coordinated process with dynamic relationships between bacterial players. Current understanding of dynamic changes in the bacterial composition during the AD process is incomplete. The objective of this research was to assess changes in bacterial community composition that coordinates with anaerobic codigestion of microalgal biomass cultivated on municipal wastewater. An upflow anaerobic sludge blanket reactor was used to achieve high rates of microalgae decomposition and biogas production. Samples of the sludge were collected throughout AD and extracted DNA was subjected to next-generation sequencing using methanogen mcrA gene specific and universal bacterial primers. Analysis of the data revealed that samples taken at different stages of AD had varying bacterial composition. A group consisting of Bacteroidales, Pseudomonadales, and Enterobacteriales was identified to be putatively responsible for the hydrolysis of microalgal biomass. The methanogenesis phase was dominated by Methanosarcina mazei. Results of observed changes in the composition of microbial communities during AD can be used as a road map to stimulate key bacterial species identified at each phase of AD to increase yield of biogas and rate of substrate decomposition. This research demonstrates a successful exploitation of methane production from microalgae without any biomass pretreatment.
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Affiliation(s)
- Anna Doloman
- Department of Biological Engineering, Utah State University, Old Main Hill 4105, Logan, UT 84322-4105, USA
| | - Yousef Soboh
- Department of Food Processing, Palestine Technical Colleges, Arroub, P.O. Box 14, West Bank, State of Palestine
| | - Andrew J. Walters
- Department of Biological Engineering, Utah State University, Old Main Hill 4105, Logan, UT 84322-4105, USA
| | - Ronald C. Sims
- Department of Biological Engineering, Utah State University, Old Main Hill 4105, Logan, UT 84322-4105, USA
| | - Charles D. Miller
- Department of Biological Engineering, Utah State University, Old Main Hill 4105, Logan, UT 84322-4105, USA
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Awe OW, Zhao Y, Nzihou A, Pham Minh D, Lyczko N. Anaerobic co-digestion of food waste and FOG with sewage sludge – realising its potential in Ireland. ACTA ACUST UNITED AC 2017. [DOI: 10.1080/00207233.2017.1380335] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Olumide Wesley Awe
- School of Civil Engineering, Dooge Centre for Water Resources Research, University College Dublin, Dublin, Ireland
| | - Yaqian Zhao
- School of Civil Engineering, Dooge Centre for Water Resources Research, University College Dublin, Dublin, Ireland
| | - Ange Nzihou
- Mines Albi, CNRS UMR 5302, Centre RAPSODEE, Université de Toulouse, Albi, France
| | - Doan Pham Minh
- Mines Albi, CNRS UMR 5302, Centre RAPSODEE, Université de Toulouse, Albi, France
| | - Nathalie Lyczko
- Mines Albi, CNRS UMR 5302, Centre RAPSODEE, Université de Toulouse, Albi, France
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Walter A, Probst M, Hinterberger S, Müller H, Insam H. Biotic and abiotic dynamics of a high solid-state anaerobic digestion box-type container system. WASTE MANAGEMENT (NEW YORK, N.Y.) 2016; 49:26-35. [PMID: 26860425 DOI: 10.1016/j.wasman.2016.01.039] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/23/2015] [Revised: 01/25/2016] [Accepted: 01/28/2016] [Indexed: 06/05/2023]
Abstract
A solid-state anaerobic digestion box-type container system for biomethane production was observed in 12 three-week batch fermentations. Reactor performance was monitored using physico-chemical analysis and the methanogenic community was identified using ANAEROCHIP-microarrays and quantitative PCR. A resilient community was found in all batches, despite variations in inoculum to substrate ratio, feedstock quality, and fluctuating reactor conditions. The consortia were dominated by mixotrophic Methanosarcina that were accompanied by hydrogenotrophic Methanobacterium, Methanoculleus, and Methanocorpusculum. The relationship between biotic and abiotic variables was investigated using bivariate correlation analysis and univariate analysis of variance. High amounts of biogas were produced in batches with high copy numbers of Methanosarcina. High copy numbers of Methanocorpusculum and extensive percolation, however, were found to negatively correlate with biogas production. Supporting these findings, a negative correlation was detected between Methanocorpusculum and Methanosarcina. Based on these results, this study suggests Methanosarcina as an indicator for well-functioning reactor performance.
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Affiliation(s)
- Andreas Walter
- Institut für Mikrobiologie, Universität Innsbruck, Technikerstraße 25d, 6020 Innsbruck, Austria; Hochschule Hamm-Lippstadt, Biotechnologie, Marker Allee 76-78, 59063 Hamm, Germany.
| | - Maraike Probst
- Institut für Mikrobiologie, Universität Innsbruck, Technikerstraße 25d, 6020 Innsbruck, Austria.
| | | | - Horst Müller
- Müller Abfallprojekte GmbH, Hauptstraße 34, 4675 Weibern, Austria.
| | - Heribert Insam
- Institut für Mikrobiologie, Universität Innsbruck, Technikerstraße 25d, 6020 Innsbruck, Austria.
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7
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Walter A, Silberberger S, Juárez MFD, Insam H, Franke-Whittle IH. Biomethane potential of industrial paper wastes and investigation of the methanogenic communities involved. BIOTECHNOLOGY FOR BIOFUELS 2016; 9:21. [PMID: 26819629 PMCID: PMC4728753 DOI: 10.1186/s13068-016-0435-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2015] [Accepted: 01/08/2016] [Indexed: 05/16/2023]
Abstract
BACKGROUND Cellulose-containing waste products from the agricultural or industrial sector are potentially one of the largest sources of renewable energy on earth. In this study, the biomethane potential (BMP) of two types of industrial paper wastes, wood and pulp residues (WR and PR, respectively), were evaluated under both mesophilic and thermophilic conditions, and various pretreatment methods were applied in the attempt to increase the methane potential during anaerobic digestion. The methanogenic community composition was investigated with denaturing gradient gel electrophoresis (DGGE) and the ANAEROCHIP microarray, and dominant methanogens were quantitated using quantitative PCR. RESULTS All pretreatments investigated in this study with the exception of the alkaline pretreatment of PR were found to increase the BMP of two paper industry wastes. However, the low recalcitrance level of the PR resulted in the pretreatments being less effective in increasing BMP when compared with those for WR. These results were supported by the physico-chemical data. A combined application of ultrasound and enzymatic pretreatment was found to be the best strategy for increasing methane yields. The retention time of substrates in the reactors strongly influenced the BMP of wastes subjected to the different pretreatments. In sludges from both paper wastes subjected to the various pretreatments, mixotrophic Methanosarcina species were found to dominate the community, accompanied by a consortium of hydrogenotrophic genera. CONCLUSIONS Pretreating industrial paper wastes could be a potentially viable option for increasing the overall degradation efficiency and decreasing reactor retention time for the digestion of complex organic matter such as lignocellulose or hemicellulose. This would help reduce the environmental burden generated from paper production. Although there were minor differences in the methanogenic communities depending on the temperature of anaerobic digestion, there was little effect of substrate and pretreatment type on the community composition. Thus, methanogen community dynamics would not seem to be an appropriate indicator regarding BMP in the AD processes investigated.
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Affiliation(s)
- Andreas Walter
- />Institut für Mikrobiologie, Universität Innsbruck, Technikerstraße 25d, 6020 Innsbruck, Austria
- />Hochschule Hamm-Lippstadt, Biotechnologie, Marker Allee 76-78, 59063 Hamm, Germany
| | - Sandra Silberberger
- />Institut für Mikrobiologie, Universität Innsbruck, Technikerstraße 25d, 6020 Innsbruck, Austria
| | | | - Heribert Insam
- />Institut für Mikrobiologie, Universität Innsbruck, Technikerstraße 25d, 6020 Innsbruck, Austria
| | - Ingrid H. Franke-Whittle
- />Institut für Mikrobiologie, Universität Innsbruck, Technikerstraße 25d, 6020 Innsbruck, Austria
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Structures of microbial communities found in anaerobic batch runs that produce methane from propionic acid—Seeded from full-scale anaerobic digesters above a certain threshold. J Biotechnol 2015; 214:192-8. [DOI: 10.1016/j.jbiotec.2015.09.040] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2015] [Revised: 09/14/2015] [Accepted: 09/29/2015] [Indexed: 11/24/2022]
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9
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Shin SG, Han G, Lee J, Cho K, Jeon EJ, Lee C, Hwang S. Characterization of food waste-recycling wastewater as biogas feedstock. BIORESOURCE TECHNOLOGY 2015; 196:200-208. [PMID: 26241839 DOI: 10.1016/j.biortech.2015.07.089] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2015] [Revised: 07/22/2015] [Accepted: 07/23/2015] [Indexed: 06/04/2023]
Abstract
A set of experiments was carried out to characterize food waste-recycling wastewater (FRW) and to investigate annual and seasonal variations in composition, which is related to the process operation in different seasons. Year-round samplings (n=31) showed that FRW contained high chemical oxygen demand (COD; 148.7±30.5g/L) with carbohydrate (15.6%), protein (19.9%), lipid (41.6%), ethanol (14.0%), and volatile fatty acids (VFAs; 4.2%) as major constituents. FRW was partly (62%) solubilized, possibly due to partial fermentation of organics including carbohydrate. Biodegradable portions of carbohydrate and protein were estimated from acidogenesis test by first-order kinetics: 72.9±4.6% and 37.7±0.3%, respectively. A maximum of 50% of the initial organics were converted to three major VFAs, which were acetate, propionate, and butyrate. The methane potential was estimated as 0.562L CH4/g VSfeed, accounting for 90.0% of the theoretical maximum estimated by elemental analysis.
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Affiliation(s)
- Seung Gu Shin
- School of Environmental Science and Engineering, Pohang University of Science and Technology, Pohang, Gyeongbuk, South Korea
| | - Gyuseong Han
- School of Environmental Science and Engineering, Pohang University of Science and Technology, Pohang, Gyeongbuk, South Korea
| | - Joonyeob Lee
- School of Environmental Science and Engineering, Pohang University of Science and Technology, Pohang, Gyeongbuk, South Korea
| | - Kyungjin Cho
- Center for Water Resource Cycle Research, Korea Institute of Science and Technology, Seoul, South Korea
| | - Eun-Jeong Jeon
- Green Technology Research Center, Sudokwon Landfill Site Management Corporation, Incheon, South Korea
| | - Changsoo Lee
- School of Urban and Environmental Engineering, Ulsan National Institute of Science and Technology, Ulsan, South Korea
| | - Seokhwan Hwang
- School of Environmental Science and Engineering, Pohang University of Science and Technology, Pohang, Gyeongbuk, South Korea.
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Design and application of a synthetic DNA standard for real-time PCR analysis of microbial communities in a biogas digester. Appl Microbiol Biotechnol 2015; 99:6855-63. [DOI: 10.1007/s00253-015-6721-z] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2015] [Revised: 05/19/2015] [Accepted: 05/23/2015] [Indexed: 11/25/2022]
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Lee S, Lee B, Han G, Yoon H, Kim W. Performance of and methanogenic communities involved in an innovative anaerobic process for the treatment of food wastewater in a pilot plant. Biosci Biotechnol Biochem 2015; 79:1378-83. [PMID: 25744534 DOI: 10.1080/09168451.2015.1018122] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
In this study, dual-cylindrical anaerobic digesters were designed and built on the pilot plant scale for the improvement of anaerobic digestion efficiency. The removal efficiency of organics, biogas productivity, yield, and microbial communities was evaluated as performance parameters of the digester. During the stable operational period in the continuous mode, the removal efficiencies of chemical oxygen demand and total solids were 74.1 and 65.1%, respectively. Biogas productivities of 63.9 m(3)/m(3)-FWW and 1.3 m(3)/kg-VSremoved were measured. The hydrogenotrophic methanogen orders, Methanomicrobiales and Methanobacteriales, were predominant over the aceticlastic methanogen order, Methanosarcinaceae, probably due to the tolerance of the hydrogenotrophs to environmental perturbation in the field and their faster growth rate compared with that of the aceticlastics.
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Affiliation(s)
- Seungyong Lee
- a R&D Center, POSCO Engineering & Construction Co., Ltd. , Incheon , Republic of Korea
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12
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Junicke H, Abbas B, Oentoro J, van Loosdrecht M, Kleerebezem R. Absolute quantification of individual biomass concentrations in a methanogenic coculture. AMB Express 2014; 4:35. [PMID: 24949269 PMCID: PMC4052637 DOI: 10.1186/s13568-014-0035-x] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2014] [Accepted: 03/16/2014] [Indexed: 11/29/2022] Open
Abstract
Identification of individual biomass concentrations is a crucial step towards an improved understanding of anaerobic digestion processes and mixed microbial conversions in general. The knowledge of individual biomass concentrations allows for the calculation of biomass specific conversion rates which form the basis of anaerobic digestion models. Only few attempts addressed the absolute quantification of individual biomass concentrations in methanogenic microbial ecosystems which has so far impaired the calculation of biomass specific conversion rates and thus model validation. This study proposes a quantitative PCR (qPCR) approach for the direct determination of individual biomass concentrations in methanogenic microbial associations by correlating the native qPCR signal (cycle threshold, Ct) to individual biomass concentrations (mg dry matter/L). Unlike existing methods, the proposed approach circumvents error-prone conversion factors that are typically used to convert gene copy numbers or cell concentrations into actual biomass concentrations. The newly developed method was assessed and deemed suitable for the determination of individual biomass concentrations in a defined coculture of Desulfovibrio sp. G11 and Methanospirillum hungatei JF1. The obtained calibration curves showed high accuracy, indicating that the new approach is well suited for any engineering applications where the knowledge of individual biomass concentrations is required.
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13
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Microbial ecology of anaerobic digesters: the key players of anaerobiosis. ScientificWorldJournal 2014; 2014:183752. [PMID: 24701142 PMCID: PMC3950365 DOI: 10.1155/2014/183752] [Citation(s) in RCA: 159] [Impact Index Per Article: 15.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2013] [Accepted: 12/10/2013] [Indexed: 11/17/2022] Open
Abstract
Anaerobic digestion is the method of wastes treatment aimed at a reduction of their hazardous effects on the biosphere. The mutualistic behavior of various anaerobic microorganisms results in the decomposition of complex organic substances into simple, chemically stabilized compounds, mainly methane and CO2. The conversions of complex organic compounds to CH4 and CO2 are possible due to the cooperation of four different groups of microorganisms, that is, fermentative, syntrophic, acetogenic, and methanogenic bacteria. Microbes adopt various pathways to evade from the unfavorable conditions in the anaerobic digester like competition between sulfate reducing bacteria (SRB) and methane forming bacteria for the same substrate. Methanosarcina are able to use both acetoclastic and hydrogenotrophic pathways for methane production. This review highlights the cellulosic microorganisms, structure of cellulose, inoculum to substrate ratio, and source of inoculum and its effect on methanogenesis. The molecular techniques such as DGGE (denaturing gradient gel electrophoresis) utilized for dynamic changes in microbial communities and FISH (fluorescent in situ hybridization) that deal with taxonomy and interaction and distribution of tropic groups used are also discussed.
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14
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Kim J, Lim J, Lee C. Quantitative real-time PCR approaches for microbial community studies in wastewater treatment systems: Applications and considerations. Biotechnol Adv 2013; 31:1358-73. [DOI: 10.1016/j.biotechadv.2013.05.010] [Citation(s) in RCA: 72] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2013] [Revised: 05/02/2013] [Accepted: 05/28/2013] [Indexed: 02/08/2023]
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15
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Cardinali-Rezende J, Araújo JC, Almeida PGS, Chernicharo CAL, Sanz JL, Chartone-Souza E, Nascimento AMA. Organic loading rate and food-to-microorganism ratio shape prokaryotic diversity in a demo-scale up-flow anaerobic sludge blanket reactor treating domestic wastewater. Antonie van Leeuwenhoek 2013; 104:993-1003. [PMID: 24000090 DOI: 10.1007/s10482-013-0018-y] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2013] [Accepted: 08/24/2013] [Indexed: 12/01/2022]
Abstract
We investigated the microbial community in an up-flow anaerobic sludge blanket (UASB) reactor treating domestic wastewater (DW) during two different periods of organic loading rate (OLR) and food-to-microorganism (F/M) ratio. 16S rDNA clone libraries were generated, and quantitative real-time PCR (qPCR) analyses were performed. Fluctuations in the OLR and F/M ratio affected the abundance and the composition of the UASB prokaryotic community, mainly at the species level, as well as the performance of the UASB reactor. The qPCR analysis suggested that there was a decrease in the bacterial cell number during the rainy season, when the OLR and F/M ratio were lower. However, the bacterial diversity was higher during this time, suggesting that the community degraded more diversified substrates. The diversity and the abundance of the archaeal community were higher when the F/M ratio was lower. Shifts in the methanogenic community composition might have influenced the route of methane production, with methane produced by acetotrophic methanogens (dry season), and by hydrogenotrophic, methylotrophic and acetotrophic methanogens (rainy season). This study revealed higher levels of bacterial diversity, metabolic specialization and chemical oxygen demand removal efficiency of the DW UASB reactor during the rainy season.
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Affiliation(s)
- Juliana Cardinali-Rezende
- Departamento de Biologia Geral, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Av. Antônio Carlos, 6627, Belo Horizonte, MG, 31270-901, Brazil
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16
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Cho K, Lee J, Kim W, Hwang S. Behavior of methanogens during start-up of farm-scale anaerobic digester treating swine wastewater. Process Biochem 2013. [DOI: 10.1016/j.procbio.2013.04.016] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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17
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Kim J, Lee S, Lee C. Comparative study of changes in reaction profile and microbial community structure in two anaerobic repeated-batch reactors started up with different seed sludges. BIORESOURCE TECHNOLOGY 2013; 129:495-505. [PMID: 23266851 DOI: 10.1016/j.biortech.2012.11.119] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2012] [Revised: 11/26/2012] [Accepted: 11/26/2012] [Indexed: 06/01/2023]
Abstract
Microbial community structure and dynamics were examined in two anaerobic reactors run in repeated-batch mode to treat whey permeate. Despite being started up using different seeding sources, the reactors showed generally similar reaction patterns and performances. During the repeated-batch operation for three cycles, the overall reaction rate increased with the increase in the initial population size of both bacteria and methanogens over cycles. Clostridium- and Methanospirillum-related microorganisms were likely the main acidogenic and methanogenic populations, respectively, in both reactors. Bacterial community structure shifted dynamically over cycles, while little change was observed in methanogen community structure throughout the operation. This means that the changes in bacterial community structure changes had little influence on the formation and evolution of methanogen community structure in the reactors. The increased methanogenesis rate with cycles seemed therefore more likely due to the effect of the increase in methanogen abundance rather than the alteration of community structure.
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Affiliation(s)
- Jaai Kim
- School of Urban and Environmental Engineering, Ulsan National Institute of Science and Technology (UNIST), UNIST-gil 50, Eonyang-eup, Ulju-gun, Ulsan 689-798, Republic of Korea
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Walter A, Knapp BA, Farbmacher T, Ebner C, Insam H, Franke-Whittle IH. Searching for links in the biotic characteristics and abiotic parameters of nine different biogas plants. Microb Biotechnol 2012; 5:717-30. [PMID: 22950603 PMCID: PMC3532602 DOI: 10.1111/j.1751-7915.2012.00361.x] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2012] [Accepted: 07/23/2012] [Indexed: 11/29/2022] Open
Abstract
To find links between the biotic characteristics and abiotic process parameters in anaerobic digestion systems, the microbial communities of nine full‐scale biogas plants in South Tyrol (Italy) and Vorarlberg (Austria) were investigated using molecular techniques and the physical and chemical properties were monitored. DNA from sludge samples was subjected to microarray hybridization with the ANAEROCHIP microarray and results indicated that sludge samples grouped into two main clusters, dominated either by Methanosarcina or by Methanosaeta, both aceticlastic methanogens. Hydrogenotrophic methanogens were hardly detected or if detected, gave low hybridization signals. Results obtained using denaturing gradient gel electrophoresis (DGGE) supported the findings of microarray hybridization. Real‐time PCR targeting Methanosarcina and Methanosaeta was conducted to provide quantitative data on the dominating methanogens. Correlation analysis to determine any links between the microbial communities found by microarray analysis, and the physicochemical parameters investigated was conducted. It was shown that the sludge samples dominated by the genus Methanosarcina were positively correlated with higher concentrations of acetate, whereas sludge samples dominated by representatives of the genus Methanosaeta had lower acetate concentrations. No other correlations between biotic characteristics and abiotic parameters were found. Methanogenic communities in each reactor were highly stable and resilient over the whole year.
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Affiliation(s)
- Andreas Walter
- University of Innsbruck, Institute of Microbiology, Technikerstraße 25d, 6020 Innsbruck, Austria.
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De Vrieze J, Hennebel T, Boon N, Verstraete W. Methanosarcina: the rediscovered methanogen for heavy duty biomethanation. BIORESOURCE TECHNOLOGY 2012; 112:1-9. [PMID: 22418081 DOI: 10.1016/j.biortech.2012.02.079] [Citation(s) in RCA: 445] [Impact Index Per Article: 37.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2011] [Revised: 02/13/2012] [Accepted: 02/16/2012] [Indexed: 05/07/2023]
Abstract
Anaerobic digestion is an important technology in the framework of renewable energy production. The anaerobic digestion system is susceptible to perturbations due to the sensitivity of the methanogens towards environmental factors. Currently, technology is evolving from conventional waste treatment, i.e. the removal of pollutants, to very intensive biogas production from concentrated wastes, in the framework of bio-energy production. In the latter configuration Methanosarcina species appear to be of crucial importance. Methanosarcina sp. are, compared to other methanogens, quite robust towards different impairments. They are reported to be tolerant to total ammonium concentrations up to 7000 mg L(-1), salt concentrations up to 18,000 mg Na(+)L(-1), a pH shock of 0.8-1.0 units and acetate concentrations up to 15,000 mg CODL(-1). The possibilities of Methanosarcina sp. as key organisms in specific types of anaerobic digestion systems are demonstrated in this review.
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Affiliation(s)
- Jo De Vrieze
- Laboratory of Microbial Ecology and Technology (LabMET), Ghent University, Coupure Links 653, B-9000 Gent, Belgium
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