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Parra RD. Hydrogen-Bond-Driven Peptide Nanotube Formation: A DFT Study. Molecules 2023; 28:6217. [PMID: 37687047 PMCID: PMC10488343 DOI: 10.3390/molecules28176217] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Revised: 08/21/2023] [Accepted: 08/23/2023] [Indexed: 09/10/2023] Open
Abstract
DFT calculations were carried out to examine geometries and binding energies of H-bond-driven peptide nanotubes. A bolaamphiphile molecule, consisting of two N-α amido glycylglycine head groups linked by either one CH2 group or seven CH2 groups, is used as a building block for nanotube self-assembly. In addition to hydrogen bonds between adjacent carboxy or amide groups, nanotube formation is also driven by weak C-H· · ·O hydrogen bonds between a methylene group and the carboxy OH group, and between a methylene group and an amide O=C group. The intratubular O-H· · ·O=C hydrogen bonds account for approximately a third of the binding energies. Binding energies calculated with the wB97XD/DGDZVP method show that the hydrocarbon chains play a stabilizing role in nanotube self-assembly. The shortest nanotube has the length of a single monomer and a diameter than increases with the number of monomers. Lengthening of the tubular structure occurs through intertubular O-H· · ·O=C hydrogen bonds. The average intertubular O-H· · ·O=C hydrogen bond binding energy is estimated to change with the size of the nanotubes, decreasing slightly towards some plateau value near 15 kcal/mol according to the wB97XD/DGDZVP method.
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Affiliation(s)
- Rubén D Parra
- Department of Chemistry and Biochemistry, DePaul University, Chicago, IL 60614, USA
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2
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Xia M, Li S, Xie Z. Self-assembly of guanosine into carbon-based multilayer materials. Chem Commun (Camb) 2023; 59:2783-2786. [PMID: 36786684 DOI: 10.1039/d2cc05793j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/10/2023]
Abstract
We report the utilization of guanosine as a supramolecular precursor that unprecedentedly renders the formation of carbon-based multilayer materials with naturally high-level nitrogen doping. As a proof-of-concept, the porous carbon multilayers after anchoring 0.5 wt% Rh electrocatalysts displayed an excellent hydrogen evolution reaction activity.
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Affiliation(s)
- Miao Xia
- State Key Laboratory of Photocatalysis on Energy and Environment, Fujian Provincial Key Laboratory of Electrochemical Energy Storage Materials, Fuzhou University, 2 Xueyuan Road, Fuzhou 350016, China. .,Changzhou Centers for Disease Control and Prevention, Changzhou, China
| | - Shuchun Li
- State Key Laboratory of Photocatalysis on Energy and Environment, Fujian Provincial Key Laboratory of Electrochemical Energy Storage Materials, Fuzhou University, 2 Xueyuan Road, Fuzhou 350016, China.
| | - Zailai Xie
- State Key Laboratory of Photocatalysis on Energy and Environment, Fujian Provincial Key Laboratory of Electrochemical Energy Storage Materials, Fuzhou University, 2 Xueyuan Road, Fuzhou 350016, China.
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Karatrantos AV, Mugemana C, Bouhala L, Clarke N, Kröger M. From Ionic Nanoparticle Organic Hybrids to Ionic Nanocomposites: Structure, Dynamics, and Properties: A Review. NANOMATERIALS (BASEL, SWITZERLAND) 2022; 13:2. [PMID: 36615912 PMCID: PMC9823933 DOI: 10.3390/nano13010002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/22/2022] [Revised: 12/13/2022] [Accepted: 12/15/2022] [Indexed: 06/17/2023]
Abstract
Ionic nanoparticle organic hybrids have been the focus of research for almost 20 years, however the substitution of ionic canopy by an ionic-entangled polymer matrix was implemented only recently, and can lead to the formulation of ionic nanocomposites. The functionalization of nanoparticle surface by covalently grafting a charged ligand (corona) interacting electrostatically with the oppositely charged canopy (polymer matrix) can promote the dispersion state and stability which are prerequisites for property "tuning", polymer reinforcement, and fabrication of high-performance nanocomposites. Different types of nanoparticle, shape (spherical or anisotropic), loading, graft corona, polymer matrix type, charge density, molecular weight, can influence the nanoparticle dispersion state, and can alter the rheological, mechanical, electrical, self-healing, and shape-memory behavior of ionic nanocomposites. Such ionic nanocomposites can offer new properties and design possibilities in comparison to traditional polymer nanocomposites. However, to achieve a technological breakthrough by designing and developing such ionic nanomaterials, a synergy between experiments and simulation methods is necessary in order to obtain a fundamental understanding of the underlying physics and chemistry. Although there are a few coarse-grained simulation efforts to disclose the underlying physics, atomistic models and simulations that could shed light on the interphase, effect of polymer and nanoparticle chemistry on behavior, are completely absent.
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Affiliation(s)
- Argyrios V. Karatrantos
- Materials Research and Technology, Luxembourg Institute of Science and Technology, 5, Avenue des Hauts-Fourneaux, L-4362 Esch-sur-Alzette, Luxembourg
| | - Clement Mugemana
- Materials Research and Technology, Luxembourg Institute of Science and Technology, 5, Avenue des Hauts-Fourneaux, L-4362 Esch-sur-Alzette, Luxembourg
| | - Lyazid Bouhala
- Materials Research and Technology, Luxembourg Institute of Science and Technology, 5, Avenue des Hauts-Fourneaux, L-4362 Esch-sur-Alzette, Luxembourg
| | - Nigel Clarke
- Department of Physics & Astronomy, University of Sheffield, Hicks Buildingv Hounsfield Road, Sheffield S3 7RH, UK
| | - Martin Kröger
- Polymer Physics, Department of Materials, ETH Zurich, Leopold-Ruzicka-Weg 4, CH-8093 Zurich, Switzerland
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4
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Burger NA, Meier G, Bouteiller L, Loppinet B, Vlassopoulos D. Dynamics and Rheology of Supramolecular Assemblies at Elevated Pressures. J Phys Chem B 2022; 126:6713-6724. [PMID: 36018571 DOI: 10.1021/acs.jpcb.2c03295] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A methodology to investigate the linear viscoelastic properties of complex fluids at elevated pressures (up to 120 MPa) is presented. It is based on a dynamic light scattering (DLS) setup coupled with a stainless steel chamber, where the test sample is pressurized by means of an inert gas. The viscoelastic spectra are extracted through passive microrheology. We discuss an application to hydrogen-bonding motif 2,4-bis(2-ethylhexylureido)toluene (EHUT), which self-assembles into supramolecular structures (tubes and filaments) in apolar solvents dodecane and cyclohexane. High levels of pressure (roughly above 20 MPa) are found to slow down the terminal relaxation process; however, the increases in the entanglement plateau modulus and the associated persistence length are not significant. The concentration dependence of the plateau modulus, relaxation times (fast and slow), and correlation length is practically the same for all pressures and exhibits distinct power-law behavior in different regimes. Within the tube phase in dodecane, the relative viscosity increment is weakly enhanced with increasing pressure and reaches a plateau at about 60 MPa. In fact, depending on concentration, the application of pressure in the tube regime may lead to a transition from a viscous (unentangled) to a viscoelastic (partially entangled to well-entangled) solution. For well-entangled, long tubes, the extent of the plateau regime (ratio of high- to low-moduli crossover frequencies) increases with pressure. The collective information from these observations is summarized in a temperature-pressure state diagram. These findings provide ingredients for the formulation of a solid theoretical framework to better understand and exploit the role of pressure in the structure and dynamics of supramolecular polymers.
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Affiliation(s)
- Nikolaos A Burger
- Foundation for Research & Technology Hellas (FORTH), Institute for Electronic Structure & Laser, Heraklion 70013, Greece.,Department of Materials Science & Technology, University of Crete, Heraklion 70013, Greece
| | - Gerhard Meier
- Forschungszentrum Jülich, Biomacromolecular Systems and Processes (IBI-4), 52425 Jülich, Germany
| | - Laurent Bouteiller
- Sorbonne Université, CNRS, IPCM, Equipe Chimie des Polymères, 75005 Paris, France
| | - Benoit Loppinet
- Foundation for Research & Technology Hellas (FORTH), Institute for Electronic Structure & Laser, Heraklion 70013, Greece
| | - Dimitris Vlassopoulos
- Foundation for Research & Technology Hellas (FORTH), Institute for Electronic Structure & Laser, Heraklion 70013, Greece.,Department of Materials Science & Technology, University of Crete, Heraklion 70013, Greece
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5
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Burger NA, Pembouong G, Bouteiller L, Vlassopoulos D, Loppinet B. Complete Dynamic Phase Diagram of a Supramolecular Polymer. Macromolecules 2022. [DOI: 10.1021/acs.macromol.1c02508] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Nikolaos A. Burger
- Institute for Electronic Structure & Laser, Foundation for Research & Technology Hellas (FORTH), Heraklion 70013, Greece
- Department of Materials Science & Technology, University of Crete, Heraklion 70013, Greece
| | - Gaelle Pembouong
- CNRS, IPCM, Equipe Chimie des Polymères, Sorbonne Université, Paris 75005, France
| | - Laurent Bouteiller
- CNRS, IPCM, Equipe Chimie des Polymères, Sorbonne Université, Paris 75005, France
| | - Dimitris Vlassopoulos
- Institute for Electronic Structure & Laser, Foundation for Research & Technology Hellas (FORTH), Heraklion 70013, Greece
- Department of Materials Science & Technology, University of Crete, Heraklion 70013, Greece
| | - Benoit Loppinet
- Institute for Electronic Structure & Laser, Foundation for Research & Technology Hellas (FORTH), Heraklion 70013, Greece
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6
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Song Z, Zhai X, Jiang C, Chen R, Ye S, Tong J, Dramou P, He H. Sensitive and selective detection of carbamazepine in serum samples by bionic double-antibody sandwich method based on cucurbit[7]uril and molecular imprinted polymers. Biosens Bioelectron 2022; 203:114037. [PMID: 35123315 DOI: 10.1016/j.bios.2022.114037] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Revised: 01/20/2022] [Accepted: 01/21/2022] [Indexed: 12/17/2022]
Abstract
A novel bionic enzyme-linked immunosorbent assay (BELISA) based on double-antibody sandwich method is firstly designed for the detection of carbamazepine (CBZ) in human serum samples. In this BELISA system, cucurbit[7]uril (CB[7]) is employed as an artificial capture antibody (cAb), and molecularly imprinted polymers (MIPs) is used as an artificial detection antibody (dAb). Nanozymes (PdNPs) as signal generators are integrated with MIPs. This couple of bionic antibodies exhibits not only the excellent physical and chemical stability, but also the superior molecular recognition ability. Based on two bionic antibodies that can selectively recognize different sites of CBZ molecule, a new BELISA method has been constructed for the first time. The proposed BELISA method displays a good linear relationship ranging from 2 to 20 μg mL-1. The detection limit is 0.37 μg mL-1, which can well meet clinical testing demand. It provides a more stable and economical method for clinical therapeutic drug monitoring (TDM).
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Affiliation(s)
- Zhaorui Song
- Department of Analytical Chemistry, China Pharmaceutical University, Nanjing, 211100, China; Bohai rim Advanced Research Institute for Drug Discovery, Yantai, 264003, Shandong, China
| | - Xinhui Zhai
- Department of Analytical Chemistry, China Pharmaceutical University, Nanjing, 211100, China
| | - Chenrui Jiang
- Department of Analytical Chemistry, China Pharmaceutical University, Nanjing, 211100, China
| | - Rong Chen
- Department of Analytical Chemistry, China Pharmaceutical University, Nanjing, 211100, China
| | - Sijing Ye
- Department of Analytical Chemistry, China Pharmaceutical University, Nanjing, 211100, China
| | - Jinzhe Tong
- Department of Analytical Chemistry, China Pharmaceutical University, Nanjing, 211100, China
| | - Pierre Dramou
- Department of Analytical Chemistry, China Pharmaceutical University, Nanjing, 211100, China.
| | - Hua He
- Department of Analytical Chemistry, China Pharmaceutical University, Nanjing, 211100, China; Key Laboratory of Biomedical Functional Materials, China Pharmaceutical University, Nanjing, 211100, China; Key Laboratory of Drug Quality Control and Pharmacovigilance, Ministry of Education, China Pharmaceutical University, Nanjing, 211198, China.
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7
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Hu B, Guo Y, Li H, Liu X, Fu Y, Ding F. Recent advances in chitosan-based layer-by-layer biomaterials and their biomedical applications. Carbohydr Polym 2021; 271:118427. [PMID: 34364567 DOI: 10.1016/j.carbpol.2021.118427] [Citation(s) in RCA: 36] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2021] [Revised: 06/16/2021] [Accepted: 07/08/2021] [Indexed: 12/16/2022]
Abstract
In recent years, chitosan-based biomaterials have been continually and extensively researched by using layer-by-layer (LBL) assembly, due to their potentials in biomedicine. Various chitosan-based LBL materials have been newly developed and applied in different areas along with the development of technologies. This work reviews the recent advances of chitosan-based biomaterials produced by LBL assembly. Driving forces of LBL, for example electrostatic interactions, hydrogen bond as well as Schiff base linkage have been discussed. Various forms of chitosan-based LBL materials such as films/coatings, capsules and fibers have been reviewed. The applications of these biomaterials in the field of antimicrobial applications, drug delivery, wound dressings and tissue engineering have been comprehensively reviewed.
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Affiliation(s)
- Biao Hu
- School of Food Science and Nutrition, University of Leeds, Leeds LS2 9JT, UK
| | - Yuchun Guo
- College of Food Science, Sichuan Agricultural University, No. 46, Xin Kang Road, Yaan, Sichuan Province 625014, China
| | - Houbin Li
- School of Printing and Packaging, Wuhan University, Wuhan 430079, China
| | - Xinghai Liu
- School of Printing and Packaging, Wuhan University, Wuhan 430079, China
| | - Yuanyu Fu
- College of Food Science, Sichuan Agricultural University, No. 46, Xin Kang Road, Yaan, Sichuan Province 625014, China
| | - Fuyuan Ding
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, China.
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Choi J, Kim S, Yoo J, Choi SH, Char K. Self-Healable Antifreeze Hydrogel Based on Dense Quadruple Hydrogen Bonding. Macromolecules 2021. [DOI: 10.1021/acs.macromol.1c00295] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Jewon Choi
- Department of Chemical and Biological Engineering, Seoul National University, Seoul 08826, Republic of Korea
- The National Creative Research Initiative Center for Intelligent Hybrids, Seoul National University, Seoul 08826, Republic of Korea
| | - Seyoung Kim
- Department of Chemical and Biological Engineering, Seoul National University, Seoul 08826, Republic of Korea
- Department of Chemical Engineering, Hongik University, Seoul 04066, Republic of Korea
| | - Jin Yoo
- Department of Chemical and Biological Engineering, Seoul National University, Seoul 08826, Republic of Korea
| | - Soo-Hyung Choi
- Department of Chemical Engineering, Hongik University, Seoul 04066, Republic of Korea
| | - Kookheon Char
- Department of Chemical and Biological Engineering, Seoul National University, Seoul 08826, Republic of Korea
- The National Creative Research Initiative Center for Intelligent Hybrids, Seoul National University, Seoul 08826, Republic of Korea
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