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Wang Y, Saelao P, Chanthavixay G, Gallardo RA, Wolc A, Fulton JE, Dekkers JM, Lamont SJ, Kelly TR, Zhou H. Genomic Regions and Candidate Genes Affecting Response to Heat Stress with Newcastle Virus Infection in Commercial Layer Chicks Using Chicken 600K Single Nucleotide Polymorphism Array. Int J Mol Sci 2024; 25:2640. [PMID: 38473888 DOI: 10.3390/ijms25052640] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2024] [Revised: 02/19/2024] [Accepted: 02/22/2024] [Indexed: 03/14/2024] Open
Abstract
Heat stress results in significant economic losses to the poultry industry. Genetics plays an important role in chickens adapting to the warm environment. Physiological parameters such as hematochemical parameters change in response to heat stress in chickens. To explore the genetics of heat stress resilience in chickens, a genome-wide association study (GWAS) was conducted using Hy-Line Brown layer chicks subjected to either high ambient temperature or combined high temperature and Newcastle disease virus infection. Hematochemical parameters were measured during three treatment phases: acute heat stress, chronic heat stress, and chronic heat stress combined with NDV infection. Significant changes in blood parameters were recorded for 11 parameters (sodium (Na+, potassium (K+), ionized calcium (iCa2+), glucose (Glu), pH, carbon dioxide partial pressure (PCO2), oxygen partial pressure (PO2), total carbon dioxide (TCO2), bicarbonate (HCO3), base excess (BE), and oxygen saturation (sO2)) across the three treatments. The GWAS revealed 39 significant SNPs (p < 0.05) for seven parameters, located on Gallus gallus chromosomes (GGA) 1, 3, 4, 6, 11, and 12. The significant genomic regions were further investigated to examine if the genes within the regions were associated with the corresponding traits under heat stress. A candidate gene list including genes in the identified genomic regions that were also differentially expressed in chicken tissues under heat stress was generated. Understanding the correlation between genetic variants and resilience to heat stress is an important step towards improving heat tolerance in poultry.
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Affiliation(s)
- Ying Wang
- Genomics to Improve Poultry Innovation Lab, University of California, Davis, CA 95616, USA
- Department of Animal Science, University of California, Davis, CA 95616, USA
| | - Perot Saelao
- Genomics to Improve Poultry Innovation Lab, University of California, Davis, CA 95616, USA
- Department of Animal Science, University of California, Davis, CA 95616, USA
- Veterinary Pest Genetics Research Unit, United States Department of Agriculture U, Kerrville, TX 78006, USA
| | - Ganrea Chanthavixay
- Genomics to Improve Poultry Innovation Lab, University of California, Davis, CA 95616, USA
- Department of Animal Science, University of California, Davis, CA 95616, USA
| | - Rodrigo A Gallardo
- Genomics to Improve Poultry Innovation Lab, University of California, Davis, CA 95616, USA
- School of Veterinary Medicine, University of California, Davis, CA 95616, USA
| | - Anna Wolc
- Department of Animal Science, Iowa State University, Ames, IA 50011, USA
- Hy-Line International, Dallas Center, IA 50063, USA
| | | | - Jack M Dekkers
- Department of Animal Science, Iowa State University, Ames, IA 50011, USA
| | - Susan J Lamont
- Department of Animal Science, Iowa State University, Ames, IA 50011, USA
| | - Terra R Kelly
- Genomics to Improve Poultry Innovation Lab, University of California, Davis, CA 95616, USA
- School of Veterinary Medicine, University of California, Davis, CA 95616, USA
| | - Huaijun Zhou
- Genomics to Improve Poultry Innovation Lab, University of California, Davis, CA 95616, USA
- Department of Animal Science, University of California, Davis, CA 95616, USA
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Fagrach A, Arbani O, Karroute O, El-Ftouhy FZ, Kichou F, Bouslikhane M, Fellahi S. Prevalence of major infectious diseases in backyard chickens from rural markets in Morocco. Vet World 2023; 16:1897-1906. [PMID: 37859951 PMCID: PMC10583883 DOI: 10.14202/vetworld.2023.1897-1906] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2023] [Accepted: 08/23/2023] [Indexed: 10/21/2023] Open
Abstract
Background and Aim Raising backyard chickens is a common practice in Morocco, mainly in rural or periurban areas. Constraints due to devastating avian diseases have been recognized as a major limiting factor in backyard poultry production. Consequently, these flocks could potentially be implicated as reservoirs for poultry diseases. However, there is a considerable lack of information on disease prevalence in this production system, and the risk represented by these small flocks remains under debate. This study aimed to estimate the seroprevalence and identify related risk factors of a range of bacterial and viral pathogens of outstanding importance for the economy and public health in backyard poultry in Morocco. Materials and Methods A total of 712 sera samples and 258 cloacal swabs were collected from 712 backyard chickens from 15 rural markets in the Khemisset and Skhirat-Temara provinces. None of the sampled chickens received any vaccination. Sera samples were screened for antibodies against Newcastle disease virus (NDV) and low pathogenic avian influenza H9N2 subtype (LPAI H9N2) using a hemagglutination-inhibition test, against bursal infectious disease virus (IBDV) and infectious bronchitis virus (IBV) using enzyme-linked immunosorbent assay, and against Mycoplasma gallisepticum (MG) and Mycoplasma synoviae (MS) using a rapid serum agglutination test. Swab samples were compiled into 86 pools and submitted for molecular detection using real-time reverse-transcription-polymerase chain reaction (RT-PCR). Results The seroprevalences in backyard chickens for NDV, LPAI H9N2, IBDV, IBV, MG, and MS were 52.1% (371/712), 63.5% (452/712), 84.7% (603/712), 82.2% (585/712), 58% (413/712), and 74.8% (533/712), respectively. Based on the RT-PCR results, 2.3% (2/86), 62.8% (54/86), 2.3% (2/86), 63.9% (55/86), 40.7% (35/86), and 29.1% (25/86) of the pools were positive for NDV, H9N2 LPAI, IBDV, IBV, MG, and MS, respectively. Multiple coinfections (H9N2-IBV-MG), (H9N2-IBV-MS), or (IBV-MG-MS) were observed in 15.1%, 8.5%, and 8.5% of the tested samples, respectively. Conclusion The results show that backyard chicken flocks and rural markets have the potential to serve as reservoirs or amplifiers for poultry pathogens and could pose a risk to the commercial poultry sector. This highlights the need for a comprehensive and adapted vaccination plan for backyard chickens, and extension of efforts to increase flock owners' awareness of avian diseases and incite the implementation of biosecurity measures at the farm level.
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Affiliation(s)
- Asma Fagrach
- Department of Pathology and Veterinary Public Health, Institut Agronomique et Vétérinaire Hassan II, BP 6202, Rabat, Morocco
| | - Oumaima Arbani
- Department of Pathology and Veterinary Public Health, Institut Agronomique et Vétérinaire Hassan II, BP 6202, Rabat, Morocco
| | - Oumaima Karroute
- Department of Pathology and Veterinary Public Health, Institut Agronomique et Vétérinaire Hassan II, BP 6202, Rabat, Morocco
| | - Fatima Zahra El-Ftouhy
- Laboratory of Biochemistry, Environment and Agri-food, Faculty of Science and Technology Mohammedia, University Hassan II, Casablanca, Morocco
| | - Faouzi Kichou
- Department of Pathology and Veterinary Public Health, Institut Agronomique et Vétérinaire Hassan II, BP 6202, Rabat, Morocco
| | - Mohammed Bouslikhane
- Department of Pathology and Veterinary Public Health, Institut Agronomique et Vétérinaire Hassan II, BP 6202, Rabat, Morocco
| | - Siham Fellahi
- Department of Pathology and Veterinary Public Health, Institut Agronomique et Vétérinaire Hassan II, BP 6202, Rabat, Morocco
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Pham HM, Do TT. Detection and assessment of risk factors associated with Newcastle disease virus infection in birds in backyard poultry in Laichau province of Vietnam. Avian Pathol 2023; 52:144-152. [PMID: 36533298 DOI: 10.1080/03079457.2022.2160697] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Newcastle disease (ND) is a highly pathogenic and contagious viral infectious disease of poultry that causes a very serious problem for poultry production and economic loss worldwide. ND has been an epizootic disease in Vietnam. Information about the risk factors that are associated with virus transmission in backyard chickens in Vietnam is limited. To provide more epidemiological information about ND in Vietnam, this study was performed to estimate NDV prevalence and identify the risk factors for ND virus (NDV) infection in birds at the backyard flock level. Choanal swabs were taken from 400 randomly selected birds from 100 apparently healthy flocks from May to July 2020. Based on RT-PCR analysis, 43 of 400 swab samples (10.75%; 95% CI 8-14.17) and 21 of 100 flocks (21%; 95% CI 14.17-29.98) were positive for the fusion (F) gene of NDV. The management practice risks were: backyard flocks contacting wild birds (OR = 3.89; P = 0.030), mixed flocks with different types and species of birds (OR = 5.46; P = 0.004), and infrequency of cleaning and disinfecting poultry houses (OR (odds ratio) = 4.43; P = 0.034). The second and third risks (above) showed a positive interaction on the risk of NDV infection in birds (OR = 39.38; P = 0.001), and the first risk showed a negative interaction. Further studies on NDV surveillance in domestic waterfowl, longitudinal studies, a well-optimized RT-qPCR assay, and genetic characterization are needed. The development of handbooks, flyers, or lessons for educating poultry keepers are also needed.RESEARCH HIGHLIGHT RT-PCR was used to detect the F gene of NDV in choanal swabs.Risk factors associated with NDV-positive samples were determined.The evidence for NDV circulation in backyard healthy birds was observed.Contact with wild birds, mixed flocks, and poor hygiene were major risk factors.
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Affiliation(s)
- Hang Minh Pham
- Epidemiology and Pathology Department, National Institute of Veterinary Research, Hanoi, Vietnam
| | - Trang Thu Do
- Epidemiology and Pathology Department, National Institute of Veterinary Research, Hanoi, Vietnam
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Hussein MAI, Osman NA, Ibrahim MT, Alhassan AM, Abass NA. Seroprevalence and risk factors associated with Newcastle disease in backyard chickens in West Kordofan State, Sudan. Vet World 2022; 15:2979-2985. [PMID: 36718316 PMCID: PMC9880837 DOI: 10.14202/vetworld.2022.2979-2985] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2022] [Accepted: 11/03/2022] [Indexed: 12/30/2022] Open
Abstract
Background and Aim Newcastle disease (ND), a major constraint to poultry production worldwide, is a highly contagious disease of many species of domestic, exotic, and wild birds caused by ND virus (NDV). Epidemiological studies are lacking regarding ND in village chickens, including the traditional and intensive production systems used in Sudan. However, it is necessary to develop appropriate strategies to control the disease. Therefore, this study aimed to estimate the flock- and bird-level seroprevalence of NDV in backyard chickens in West Kordofan State, Sudan, and to identify the risk factors associated with ND in the study area. Materials and Methods The seroprevalence of the circulating NDV and bird-level risk factors associated with ND was determined in backyard chickens from March to October 2017, in six villages (Alnowara, Alleait, Geibaish, Baiad, Sougoh, and Alnuhoud) in the Geibaish and Elnuhoud localities of West Kordofan State. Results Using the hemagglutination-inhibition test, the bird- and flock-level seroprevalences of antibodies to NDV were estimated as 20.6% (78/378) and 45% (18/40), respectively. Bird-level NDV seropositivity in backyard chickens was significantly associated with the reason for raising chickens, type of housing, contact with neighboring poultry, contact with wild birds, and chicken mortality caused by infectious diseases (p ≤ 0.05). Conclusion This study indicated that NDV is circulating in backyard chickens and may act as a potential source of infection for other birds and thus persistence of ND among local traditionally managed chickens in the areas of West Kordofan State. Risk factors contributing to ND occurrence are important for designing appropriate prevention and control strategies.
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Affiliation(s)
- Mutaz A. I. Hussein
- Department of Preventive Medicine and Public Health, College of Veterinary Medicine, Sudan University of Science and Technology, Khartoum-North, Sudan,Department of Clinical Sciences, Faculty of Veterinary Science, University of West Kordofan, Al-Fulah, Sudan
| | - Nussieba A. Osman
- Department of Pathology, Parasitology, and Microbiology, College of Veterinary Medicine, Sudan University of Science and Technology, Khartoum-North, Sudan,Corresponding author: Nussieba A. Osman, e-mail: Co-authors: MAIH: , MTI: , AMA: , NAA:
| | - Mohamed T. Ibrahim
- Department of Animal Production, College of Animal Production Science and Technology, Sudan University of Science and Technology, Khartoum-North, Sudan
| | - Ayman M. Alhassan
- Department of Poultry, Central Veterinary Research Laboratory, Soba, Khartoum, Sudan
| | - Naglaa A. Abass
- Department of Preventive Medicine and Public Health, College of Veterinary Medicine, Sudan University of Science and Technology, Khartoum-North, Sudan
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Detection of Chicken Respiratory Pathogens in Live Markets of Addis Ababa, Ethiopia, and Epidemiological Implications. Vet Sci 2022; 9:vetsci9090503. [PMID: 36136719 PMCID: PMC9501380 DOI: 10.3390/vetsci9090503] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Revised: 08/27/2022] [Accepted: 09/09/2022] [Indexed: 12/04/2022] Open
Abstract
A moderate to high seroprevalence of exposure to Newcastle disease (NDV), avian metapneumovirus (aMPV), infectious laryngotracheitis virus (ILTV), infectious bronchitis virus (IBV) and Mycoplasma gallisepticum (MG) has recently been reported in Ethiopia, but it is unclear to what extent these contribute to clinical cases of respiratory disease. This study investigated the presence of these pathogens in chickens exhibiting respiratory disease in two live markets in Addis Ababa. Markets were visited weekly for three months, and 18 chickens displaying respiratory clinical signs were acquired. Swab samples were taken from the choana, trachea, air sac and larynx for bacteriology and PCR tests targeting these five pathogens. PCR-positive samples were sequenced. All 18 chickens were PCR-positive for aMPV, 50% for each of Mg and NDV, 39% for IBV and 11% for ILTV. Infections with >3 pathogens were detected in 17 of 18 chickens. Potentially pathogenic bacteria such as Escherichia coli, Klebsiella spp., Streptococcus spp. and Staphylococcus were found in 16 to 44% of chickens. IBV-positive samples were of the 793B genotype. The results associate the presence of these organisms with clinical respiratory disease and are consistent with recent serological investigations, indicating a high level of exposure to multiple respiratory pathogens.
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Wayou BA, Kassa GM, Pasotto D, Sori T, Tucciarone CM, Cecchinato M. Molecular Survey of Viral Poultry Diseases with an Indirect Public Health Significance in Central Ethiopia. Animals (Basel) 2021; 11:ani11123564. [PMID: 34944338 PMCID: PMC8697989 DOI: 10.3390/ani11123564] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Revised: 12/11/2021] [Accepted: 12/13/2021] [Indexed: 11/16/2022] Open
Abstract
Simple Summary Poultry production is increasing, in Ethiopia as well, and poultry is an extremely valuable food resource. This survey investigated the presence of important viral pathogens in poultry (infectious bronchitis virus (IBV), avian metapneumovirus (aMPV), infectious bursal disease virus (IBDV) and Newcastle disease virus (NDV)) using biomolecular assays and sequencing. The results suggested a low circulation of these pathogens, probably owing to vaccination strategies. A routine diagnostic activity should be planned to monitor pathogen circulation and support disease prevention and production levels. Abstract The importance of poultry production is globally increasing, in Ethiopia as well, where high-quality protein and contained costs make poultry a valuable food resource. However, this entails some problems linked to rural, backyard and intensively reared flock proximity and pathogen circulation. This study is aimed at monitoring the presence of important viral pathogens in poultry (infectious bronchitis virus (IBV), avian metapneumovirus (aMPV), infectious bursal disease virus (IBDV) and Newcastle disease virus (NDV)) in Ethiopia. Respiratory and cloacal swabs and bursa of Fabricius and kidney imprints on FTA cards were collected in 2021 from 16 farms and tested for IBV, aMPV, NDV and IBDV. One farm was positive for IBDV, resulting in strains similar to those present in vaccines, belonging to genogroup A1a; two farms were positive for IBV but, due to sensitivity limits, only one sample was sequenced, resulting in a 4/91-like strain (GI-13); a layer farm tested positive for NDV with a Lasota-like vaccine strain. These findings suggest a low presence of these pathogens, probably due to the implementation of vaccination strategies, which is also testified by the detection of vaccine strains. A close diagnostic activity should be implemented on a routine basis in order to monitor pathogen circulation, ameliorate biosecurity measures and protect animal health and production levels.
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Affiliation(s)
- Behailu Assefa Wayou
- Department of Veterinary Microbiology Immunology and Public Health, College of Veterinary Medicine and Agriculture, Addis Ababa University, Bishoftu P.O. Box 34, Ethiopia; (B.A.W.); (G.M.K.)
| | - Gezahegne Mamo Kassa
- Department of Veterinary Microbiology Immunology and Public Health, College of Veterinary Medicine and Agriculture, Addis Ababa University, Bishoftu P.O. Box 34, Ethiopia; (B.A.W.); (G.M.K.)
| | - Daniela Pasotto
- Department of Animal Medicine, Production and Health, University of Padua, 35020 Legnaro, Italy; (C.M.T.); (M.C.)
- Correspondence:
| | - Teshale Sori
- Department of Clinical Studies, College of Veterinary Medicine and Agriculture, Addis Ababa University, Bishoftu P.O. Box 34, Ethiopia;
| | - Claudia Maria Tucciarone
- Department of Animal Medicine, Production and Health, University of Padua, 35020 Legnaro, Italy; (C.M.T.); (M.C.)
| | - Mattia Cecchinato
- Department of Animal Medicine, Production and Health, University of Padua, 35020 Legnaro, Italy; (C.M.T.); (M.C.)
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Spatial Distribution and Seroprevalence of Newcastle Disease in Kaduna State, Nigeria. FOLIA VETERINARIA 2021. [DOI: 10.2478/fv-2021-0005] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Abstract
Newcastle disease is one of the greatest constraints to the development of poultry production in Nigeria. In this study, the spatial distribution of Newcastle disease antibodies was determined using the Geographic Information System. A total of 400 serum samples were collected from chickens in districts around Kaduna Metropolis and screened for Newcastle disease virus antibodies using the haemagglutination inhibition test done according to the procedure of OIE (2002). The spatial distribution demonstrated that the highest antibody titre level for Newcastle disease was closely associated with communities that were at entry points (Zaria— Kaduna road; Nnamdi Azikiwe bypass road; Television garage; Abuja—Kaduna expressway and Kachia road) to the metropolis and houses that are closely situated near live bird markets signifying the importance of bird movements in the spread of the disease. About 31 % (124 of 400) of chickens had antibodies to Newcastle disease virus, with exotics breeds (32.0 %) with more Newcastle disease virus antibodies than local breeds (29.8 %). The Newcastle disease prevalence was 33.9 % (39 out of 115), 31.8 % (41 out of 129) and 28.2 % (44 out of 156) for Kaduna North, Kaduna South and Chikun Local Government Areas (LGA), respectively. A Newcastle disease prevalence of 29.8 % (54 out of 181) was recorded in the local chickens, while 32.0 % (70 out of 219) was obtained from the exotic chickens.
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