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Fleskes RE, Johnson SJ, Honap TP, Abin CA, Gilmore JK, Oubré L, Bueschgen WD, Abel SM, Ofunniyin AA, Lewis CM, Schurr TG. Oral microbial diversity in 18th century African individuals from South Carolina. Commun Biol 2024; 7:1213. [PMID: 39342044 PMCID: PMC11439080 DOI: 10.1038/s42003-024-06893-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Accepted: 09/13/2024] [Indexed: 10/01/2024] Open
Abstract
As part of the Anson Street African Burial Ground Project, we characterized the oral microbiomes of twelve 18th century African-descended individuals (Ancestors) from Charleston, South Carolina, USA, to study their oral health and diet. We found that their oral microbiome composition resembled that of other historic (18th-19th century) dental calculus samples but differed from that of modern samples, and was not influenced by indicators of oral health and wear observed in the dentition. Phylogenetic analysis of the oral bacteria, Tannerella forsythia and Pseudoramibacter alactolyticus, revealed varied patterns of lineage diversity and replacement in the Americas, with the Ancestors carrying strains similar to historic period Europeans and Africans. Functional profiling of metabolic pathways suggested that the Ancestors consumed a diet low in animal protein. Overall, our study reveals important insights into the oral microbial histories of African-descended individuals, particularly oral health and diet in colonial North American enslavement contexts.
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Affiliation(s)
- Raquel E Fleskes
- Department of Anthropology, Dartmouth College, Hanover, NH, USA.
- The Anson Street African Burial Ground Project, Mount Pleasant, SC, USA.
| | - Sarah J Johnson
- Laboratories of Molecular Anthropology and Microbiome Research (LMAMR), University of Oklahoma, Norman, OK, USA
- Department of Anthropology, University of Oklahoma, Norman, OK, USA
| | - Tanvi P Honap
- Laboratories of Molecular Anthropology and Microbiome Research (LMAMR), University of Oklahoma, Norman, OK, USA
- Department of Anthropology, University of Oklahoma, Norman, OK, USA
| | - Christopher A Abin
- Laboratories of Molecular Anthropology and Microbiome Research (LMAMR), University of Oklahoma, Norman, OK, USA
- Department of Anthropology, University of Oklahoma, Norman, OK, USA
| | - Joanna K Gilmore
- The Anson Street African Burial Ground Project, Mount Pleasant, SC, USA
- Department of Sociology and Anthropology, College of Charleston, Charleston, SC, USA
| | - La'Sheia Oubré
- The Anson Street African Burial Ground Project, Mount Pleasant, SC, USA
| | | | - Suzanne M Abel
- Charleston County Coroner's Office, North Charleston, SC, USA
| | - Ade A Ofunniyin
- The Anson Street African Burial Ground Project, Mount Pleasant, SC, USA
- Department of Sociology and Anthropology, College of Charleston, Charleston, SC, USA
| | - Cecil M Lewis
- Laboratories of Molecular Anthropology and Microbiome Research (LMAMR), University of Oklahoma, Norman, OK, USA.
- Department of Anthropology, University of Oklahoma, Norman, OK, USA.
| | - Theodore G Schurr
- The Anson Street African Burial Ground Project, Mount Pleasant, SC, USA.
- Department of Anthropology, University of Pennsylvania, Philadelphia, PA, USA.
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Stantis C, Schaefer BJ, Correia MA, Alaica AK, Huffer D, Plomp E, Di Giusto M, Chidimuro B, Rose AK, Nayak A, Kendall EJ. Ethics and applications of isotope analysis in archaeology. AMERICAN JOURNAL OF BIOLOGICAL ANTHROPOLOGY 2024:e24992. [PMID: 38949078 DOI: 10.1002/ajpa.24992] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2023] [Revised: 06/03/2024] [Accepted: 06/16/2024] [Indexed: 07/02/2024]
Abstract
This synthesis explores specific ethical questions that commonly arise in isotopic analysis. For more than four decades, isotope analysis has been employed in archeological studies to explore past human and animal dietary habits, mobility patterns, and the environment in which a human or animal inhabited during life. These analyses require consideration of ethical issues. While theoretical concepts are discussed, we focus on practical aspects: working with descendant communities and other rights holders, choosing methods, creating and sharing data, and working mindfully within academia. These layers of respect and care should surround our science. This paper is relevant for specialists in isotope analysis as well as those incorporating these methods into larger projects. By covering the whole of the research process, from design to output management, we appeal broadly to archaeology and provide actionable solutions that build on the discussions in the general field.
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Affiliation(s)
- Chris Stantis
- Department of Geology and Geophysics, University of Utah, Salt Lake City, Utah, USA
| | - Benjamin J Schaefer
- Department of Anthropology, Gender and Women's Studies, and Latin American and Latino Studies, University of Illinois at Chicago, Chicago, Illinois, USA
- The Center for the Recovery and Identification of the Missing, University of Illinois at Chicago, Chicago, Illinois, USA
- Division of Anthropology, The Field Museum of Natural History, Chicago, Illinois, USA
| | - Maria Ana Correia
- Interdisciplinary Center for Archaeology and the Evolution of Human Behaviour (ICArEHB), Universidade do Algarve, Algarve, Portugal
- Laboratório de Arqueologia e Antropologia Ambiental e Evolutiva, Universidade de São Paulo, Sao Paulo, Brazil
| | - Aleksa K Alaica
- Department of Anthropology, The University of British Columbia, Vancouver, British Columbia, Canada
| | - Damien Huffer
- Department of History, Carleton University, Ottawa, Ontario, Canada
- School of Social Sciences, University of Queensland, Saint Lucia, Queensland, Australia
- The Alliance to Counter Crime Online, Washington, DC, USA
| | - Esther Plomp
- Faculty of Applied Sciences, Delft University of Technology, Delft, The Netherlands
| | - Marina Di Giusto
- Museu de Arqueologia e Etnologia, Universidade de São Paulo, Sao Paulo, Brazil
| | - Blessing Chidimuro
- Department of Geography and Environmental Science, University of Reading, Reading, UK
| | - Alice K Rose
- Department of Archaeology, Durham University, Durham, UK
| | - Ayushi Nayak
- Department of Archaeology, Max Planck Institute of Geoanthropology, Jena, Germany
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Fontani F, Boano R, Cinti A, Demarchi B, Sandron S, Rampelli S, Candela M, Traversari M, Latorre A, Iacovera R, Abondio P, Sarno S, Mackie M, Collins M, Radini A, Milani C, Petrella E, Giampalma E, Minelli A, Larocca F, Cilli E, Luiselli D. Bioarchaeological and paleogenomic profiling of the unusual Neolithic burial from Grotta di Pietra Sant'Angelo (Calabria, Italy). Sci Rep 2023; 13:11978. [PMID: 37488251 PMCID: PMC10366206 DOI: 10.1038/s41598-023-39250-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2023] [Accepted: 07/21/2023] [Indexed: 07/26/2023] Open
Abstract
The Neolithic burial of Grotta di Pietra Sant'Angelo (CS) represents a unique archaeological finding for the prehistory of Southern Italy. The unusual placement of the inhumation at a rather high altitude and far from inhabited areas, the lack of funerary equipment and the prone deposition of the body find limited similarities in coeval Italian sites. These elements have prompted wider questions on mortuary customs during the prehistory of Southern Italy. This atypical case requires an interdisciplinary approach aimed to build an integrated bioarchaeological profile of the individual. The paleopathological investigation of the skeletal remains revealed the presence of numerous markers that could be associated with craft activities, suggesting possible interpretations of the individual's lifestyle. CT analyses, carried out on the maxillary bones, showed the presence of a peculiar type of dental wear, but also a good density of the bone matrix. Biomolecular and micromorphological analyses of dental calculus highlight the presence of a rich Neolithic-like oral microbiome, the composition of which is consistent with the presence pathologies. Finally, paleogenomic data obtained from the individual were compared with ancient and modern Mediterranean populations, including unpublished high-resolution genome-wide data for 20 modern inhabitants of the nearby village of San Lorenzo Bellizzi, which provided interesting insights into the biodemographic landscape of the Neolithic in Southern Italy.
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Affiliation(s)
- Francesco Fontani
- Department of Cultural Heritage, University of Bologna, Via Degli Ariani 1, 48121, Ravenna, Italy.
| | - Rosa Boano
- Department of Life Sciences and Systems Biology, University of Turin, Via Accademia Albertina 13, 10123, Torino, Italy
| | - Alessandra Cinti
- Department of Life Sciences and Systems Biology, University of Turin, Via Accademia Albertina 13, 10123, Torino, Italy
| | - Beatrice Demarchi
- Department of Life Sciences and Systems Biology, University of Turin, Via Accademia Albertina 13, 10123, Torino, Italy
| | - Sarah Sandron
- Department of Life Sciences and Systems Biology, University of Turin, Via Accademia Albertina 13, 10123, Torino, Italy
| | - Simone Rampelli
- Department of Pharmacy and Biotechnology, University of Bologna, Via Belmeloro 6, 40126, Bologna, Italy
| | - Marco Candela
- Department of Pharmacy and Biotechnology, University of Bologna, Via Belmeloro 6, 40126, Bologna, Italy
| | - Mirko Traversari
- Department of Cultural Heritage, University of Bologna, Via Degli Ariani 1, 48121, Ravenna, Italy
| | - Adriana Latorre
- Department of Cultural Heritage, University of Bologna, Via Degli Ariani 1, 48121, Ravenna, Italy
| | - Rocco Iacovera
- Department of Cultural Heritage, University of Bologna, Via Degli Ariani 1, 48121, Ravenna, Italy
| | - Paolo Abondio
- Department of Cultural Heritage, University of Bologna, Via Degli Ariani 1, 48121, Ravenna, Italy
- Department of Biological, Geological and Environmental Sciences, University of Bologna, Via Selmi 3, 40126, Bologna, Italy
| | - Stefania Sarno
- Department of Biological, Geological and Environmental Sciences, University of Bologna, Via Selmi 3, 40126, Bologna, Italy
| | - Meaghan Mackie
- Department of Life Sciences and Systems Biology, University of Turin, Via Accademia Albertina 13, 10123, Torino, Italy
- Faculty of Health and Medical Sciences, The Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Blegdamsvej 3B, 2200, København, Denmark
- Faculty of Health and Medical Sciences, The Globe Institute, University of Copenhagen, Øster Farimagsgade 5, 1353, København, Denmark
- School of Archeology, University College Dublin, Belfield, Dublin 4, Ireland
| | - Matthew Collins
- Faculty of Health and Medical Sciences, The Globe Institute, University of Copenhagen, Øster Farimagsgade 5, 1353, København, Denmark
- McDonald Institute for Archaeological Research, University of Cambridge, Downing Street, Cambridge, CB2 3ER, UK
| | - Anita Radini
- School of Archeology, University College Dublin, Belfield, Dublin 4, Ireland
| | - Chantal Milani
- SIOF - Italian Society of Forensic Odontology, Strada Degli Schiocchi 12, 41124, Modena, Italy
| | - Enrico Petrella
- Radiology Unit, Morgagni-Pierantoni Hospital, AUSL Romagna, Via Carlo Forlanini 34, 47121, Forlì, Italy
| | - Emanuela Giampalma
- Radiology Unit, Morgagni-Pierantoni Hospital, AUSL Romagna, Via Carlo Forlanini 34, 47121, Forlì, Italy
| | - Antonella Minelli
- Department of Humanities, Education and Social Sciences, University of Molise, Via Francesco De Sanctis, 86100, Campobasso, Italy
| | - Felice Larocca
- Speleo-Archaeological Research Group, University of Bari, Piazza Umberto I 1, 70121, Bari, Italy
- Speleo-Archaeological Research Centre "Enzo dei Medici", Via Lucania 3, 87070, Roseto Capo Spulico (CS), Italy
| | - Elisabetta Cilli
- Department of Cultural Heritage, University of Bologna, Via Degli Ariani 1, 48121, Ravenna, Italy
| | - Donata Luiselli
- Department of Cultural Heritage, University of Bologna, Via Degli Ariani 1, 48121, Ravenna, Italy.
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D'Agostino A, Di Marco G, Marvelli S, Marchesini M, Rizzoli E, Rolfo MF, Canini A, Gismondi A. Neolithic dental calculi provide evidence for environmental proxies and consumption of wild edible fruits and herbs in central Apennines. Commun Biol 2022; 5:1384. [PMID: 36536113 PMCID: PMC9763411 DOI: 10.1038/s42003-022-04354-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2022] [Accepted: 12/08/2022] [Indexed: 12/23/2022] Open
Abstract
Looking for a biological fingerprint relative to new aspects of the relationship between humans and natural environment during prehistoric times is challenging. Although many issues still need to be addressed in terms of authentication and identification, microparticles hidden in ancient dental calculus can provide interesting information for bridging this gap of knowledge. Here, we show evidence about the role of edible plants for the early Neolithic individuals in the central Apennines of the Italian peninsula and relative cultural landscape. Dental calculi from human and animal specimens exhumed at Grotta Mora Cavorso (Lazio), one of the largest prehistoric burial deposits, have returned an archaeobotanical record made up of several types of palaeoecological proxies. The organic fraction of this matrix was investigated by a multidisciplinary approach, whose novelty consisted in the application of next generation sequencing to ancient plant DNA fragments, specifically codifying for maturase K barcode gene. Panicoideae and Triticeae starches, together with genetic indicators of Rosaceae fruits, figs, and Lamiaceae herbs, suggested subsistence practices most likely still based on wild plant resources. On the other hand, pollen, and non-pollen palynomorphs allowed us to outline a general vegetational framework dominated by woodland patches alternated with meadows, where semi-permanent settlements could have been established.
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Affiliation(s)
- Alessia D'Agostino
- PhD Program in Evolutionary Biology and Ecology, Department of Biology, University of Rome Tor Vergata, Rome, Italy
- Laboratory of Botany, Department of Biology, University of Rome "Tor Vergata", Rome, Italy
| | - Gabriele Di Marco
- Laboratory of Botany, Department of Biology, University of Rome "Tor Vergata", Rome, Italy
| | - Silvia Marvelli
- Laboratorio di Palinologia e Archeobotanica-C.A.A. Giorgio Nicoli, San Giovanni in Persiceto, Bologna, Italy
| | - Marco Marchesini
- Laboratorio di Palinologia e Archeobotanica-C.A.A. Giorgio Nicoli, San Giovanni in Persiceto, Bologna, Italy
| | - Elisabetta Rizzoli
- Laboratorio di Palinologia e Archeobotanica-C.A.A. Giorgio Nicoli, San Giovanni in Persiceto, Bologna, Italy
| | - Mario Federico Rolfo
- Department of History, Culture and Society, University of Rome "Tor Vergata", Rome, Italy
| | - Antonella Canini
- Laboratory of Botany, Department of Biology, University of Rome "Tor Vergata", Rome, Italy
| | - Angelo Gismondi
- Laboratory of Botany, Department of Biology, University of Rome "Tor Vergata", Rome, Italy.
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