Ethidium bromide binding to DNA cryogels

Enhanced enzymatic activity and stability by in situ entrapment of α-Glucosidase within super porous p(HEMA) cryogels during synthesis

Here, poly(2-hydroxyethyl methacrylate) (p(HEMA)) cryogel were prepared in the presence 0.48, 0.96, and 1.92 mL of α-Glucosidase enzyme (0.06 Units/mL) solutions to obtain enzyme entrapped superporous p(HEMA) cryogels, donated as α-Glucosidase@p(HEMA)-1, α-Glucosidase@p(HEMA)-2, and α-Glucosidase@p(HEMA)-3, respectively. The enzyme entrapped p(HEMA) cryogels revealed no interruption for hemolysis and coagulation of blood rendering viable biomedical application in blood contacting applications. The α-Glucosidase@p(HEMA)-1 was found to preserve its' activity% 92.3 ± 1.4 % and higher activity% against free α-Glucosidase enzymes in 15-60℃ temperature, and 4-9 pH range. The Km and Vmax values of α-Glucosidase@p(HEMA)-1 cryogel was calculated as 3.22 mM, and 0.0048 mM/min, respectively versus 1.97 mM, and 0.0032 mM/min, for free enzymes. The α-Glucosidase@p(HEMA)-1 cryogel was found to maintained enzymatic activity more than 50 % after 10 consecutive uses, and also preserved their activity more than 50 % after 10 days of storage at 25 ℃, whereas free α-Glucosidase enzyme maintained only 1.9 ± 0.9 % activity under the same conditions.

A Porphyrin-DNA Chiroptical Molecular Ruler With Base Pair Resolution

DNA-based molecular rulers enable scientists to determine important parameters across biology, from the measurement of protein binding interactions, to the study of membrane dynamics in cells. However, existing rulers can suffer from poor nanometre resolution due to the flexible nature of linkers used to tether to the DNA framework. We aimed to overcome this problem using zinc and free-base porphyrin chromophores attached via short and rigid acetylene linkers. This connectivity enables the distance and angle between the porphyrins to be fine-tuned along the DNA scaffold. The porphyrins undergo favorable energy transfer and chiral exciton coupling interactions to act as highly sensitive molecular ruler probes. To validate the system, we monitored the detection of small changes in DNA structure upon intercalation of ethidium bromide. CD spectroscopy showed the porphyrins undergo highly sensitive changes in excitation coupling to facilitate base pair resolution of the novel system.

Efficient removal of ethidium bromide from aqueous solution by using DNA-loaded Fe3O4 nanoparticles

Ethidium bromide (EtBr) is widely used as DNA-staining dyes for the detection of nucleic acids in laboratories and known to be powerful mutagens and carcinogens. In the present paper, the removal of EtBr from aqueous solutions in a batch system using DNA-loaded Fe₃O₄ nanoparticles as a simple and efficient method was investigated. DNA was covalently loaded on the surface of Fe₃O₄ magnetic nanoparticles, which was confirmed by FT-IR analysis and zeta potential measurements. The morphology and crystal structure were characterized by SEM, TEM, and XRD. The influence factors on the removal efficiency such as initial EtBr concentration, contact time, adsorbent dose, pH, and temperature were also studied. The removal process of EtBr can be completed quickly within 1 min. The removal efficiency was more than 99% while the EtBr concentration was routinely used (0.5 mg L^-1) in biology laboratories and the dosages of nanoparticles were 1 g L^-1. For the different EtBr concentrations from 0.5 to 10 mg L^-1 in aqueous solution, the goal of optimized removal was achieved by adjusting the dosage of DNA-loaded Fe₃O₄ nanoparticles. The optimum pH was around 7 and the operational temperature from 4 to 35 °C was appropriate. Kinetic studies confirmed that the adsorption followed second-order reaction kinetics. Thermodynamic data revealed that the process was spontaneous and exothermic. The adsorption of EtBr on DNA-loaded Fe₃O₄ nanoparticles fitted well with the Freundlich isotherm model. These results indicated that DNA-loaded Fe₃O₄ nanoparticles are a promising adsorbent for highly efficient removal of EtBr from aqueous solution in practice.

Cryostructuring of Polymeric Systems. 50.† Cryogels and Cryotropic Gel-Formation: Terms and Definitions

A variety of cryogenically-structured polymeric materials are of significant scientific and applied interest in various areas. However, in spite of considerable attention to these materials and intensive elaboration of their new examples, as well as the impressive growth in the number of the publications and patents on this topic over the past two decades, a marked variability of the used terminology and definitions is frequently met with in the papers, reviews, theses, patents, conference presentations, advertising materials and so forth. Therefore, the aim of this brief communication is to specify the basic terms and definitions in the particular field of macromolecular science.

Preparation and properties of cryogel based on poly(hydroxypropyl methacrylate)

A novel supermacroporous poly(hydroxypropyl methacrylate) (p(HPMA)) cryogel was synthesized by cryogelation method at -16 °C. In this synthesis process, HPMA was used as a monomer, and N,N'-methylenebisacrylamide (MBAAm) was used as cross-linker; the reaction was carried out in the presence of redox initiator pair N,N,N',N'-tetramethylene diamine (TEMED) and ammonium persulfate (APS). The effect of monomer concentration, cross-linker content, cooling rate, and dioxane co-solvent were determined with respect to the pore structure, mechanical behavior, swelling degree, and porosity of cryogel. The ESEM images indicate that the pore wall structure of cryogels was rough; moreover, small holes were present in the pore walls of cryogels. The result of compression test indicates that cryogels can be compressed by at least 80% without any breakdown. The result of swelling kinetics indicates that cryogels attain swelling equilibrium in 10 s. Furthermore, p(HPMA)-Cu²⁺ cryogel was prepared by loading Cu²⁺ ions on functionalized poly(hydroxypropyl methacrylate)-iminodiacetic acid (p(HPMA)-IDA) cryogel. We investigated the adsorption of bovine serum albumin (BSA) on cryogels. The results indicate that compared to Freundlich isotherm, Langmuir isotherm could more suitably describe the adsorption process of BSA on cryogels. Meanwhile, the adsorption capacity of p(HPMA)-Cu²⁺ cryogel was significantly greater than that of p(HPMA) cryogel. The maximum adsorption capacity of BSA on p(HPMA)-Cu²⁺ cryogel, which was treated with 1 M Cu²⁺ ions, was as high as 196.87 mg/g cryogel (equivalent to 20.48 mg/mL cryogel) at 25 °C and pH = 7.8; therefore, the maximum adsorption capacity of BSA on p(HPMA)-Cu²⁺ cryogel was 4.35 times higher than that of p(HPMA) cryogel. Thus, the adsorption capacity of cryogels was strongly influenced by Cu²⁺ concentration, moreover, temperature changes clearly affected the adsorption capacity of p(HPMA)-Cu²⁺cryogel. The adsorption capacity at 25 °C was twice as that at 15 °C. By calculating Gibbs free energy change (∆G) of adsorption, we found that the adsorption process was spontaneous; moreover, adsorption process occurred better at higher temperature.

Highly Stretchable DNA/Clay Hydrogels with Self-Healing Ability

We present mechanically strong and self-healable clay hydrogels containing 2-8 w/v % ds-DNA together with a synthetic biocompatible polymer, poly( N, N-dimethylacrylamide). Clay nanoparticles in the hydrogels act like a chemical cross-linker and promote their elastic behavior, whereas DNA contributes to their viscoelastic energy dissipation. The extent of mechanical hysteresis during cyclic tensile tests reveals that the strength of intermolecular bonds in DNA/clay hydrogels is in the range of the strength of hydrogen bonds. The hydrogels exhibit a high stretchability (up to 1500%) and a tensile strength between 20 and 150 kPa. They have the ability to self-heal, which is induced by heating the damaged gel samples above the melting temperature of ds-DNA. When comparing the mechanical properties of the hydrogels before and after healing, the healing efficiency is greater than 100%. We also demonstrate that ds-DNA molecules entrapped in the gel network undergoes thermal denaturation/renaturation cycles, leading to a further improvement in the mechanical properties of the hydrogels.

The use of superporous p(3-acrylamidopropyl)trimethyl ammonium chloride cryogels for removal of toxic arsenate anions

Poly((3-Acrylamidopropyl)trimethylammonium chloride) (p(APTMACl)) cryogels were used as a superporous polymer network for the removal of toxic arsenate anions from an aqueous medium. The fast swelling in water, in about 7 s, was shown to be very useful leading to fast arsenate adsorption by p(APTMACl) cryogels within 30 min in comparison to 12 h for bulk common p(APTMACl) hydrogels. A maximum adsorption capacity of about 120 (mg/g) arsenate was obtained for p(APTMACl) cryogels. Both the Langmuir and Freundlich adsorption isotherms were applied for adsorption of arsenate anions by p(APTMACl) cryogels, and it was observed that the adsorption of arsenate anions by p(APTMACl) cryogels are represented better via Langmuir adsorption isotherm providing the R(2) value of 0.998. Furthermore, mag-p(APTMACl) cryogels were synthesized, and shown to be very useful in the fast removal of toxic arsenate anions. The mag-p(APTMACl) cryogels including the adsorbed arsenate were removed by an externally applied magnetic field, with some reduction in the arsenate ion adsorption capacity. It was also further demonstrated that p(APTMACl) cryogels can be reused in the adsorption of arsenate 5 times from aqueous environments without significant loss of adsorption capacity, from 113.47 ± 9 to 102.67 ± 6 mg/g.

Energy and environmental usage of super porous poly(2-acrylamido-2-methyl-1-propan sulfonic acid) cryogel support

Superporous and nonporous p(AMPS) cryogels and hydrogels were prepared under freezing conditions (−18 °C) and at room temperature (25 °C), respectively.