The influence of endoparasites on selected production parameters in pigs in various housing systems

Gastrointestinal nematodes in German outdoor-reared pigs based on faecal egg count and next-generation sequencing nemabiome data

BACKGROUND

There is a higher risk for nematode infections associated with outdoor-reared pigs. Next to Ascaris suum, Oesophagostomum dentatum and Trichuris suis, there is the potential of infections with other nodular worm species, Hyostrongylus rubidus, Stongyloides ransomi and Metastrongylus spp. lungworms. Next-generation sequencing methods describing the nemabiome have not yet been established for porcine nematodes.

METHODS

FLOTAC was used for faecal egg counts of porcine gastrointestinal nematodes and lungworms in piglets, fatteners and adults individually. A nemabiome analyses based on ITS-2 gene region metabarcoding was used to differentiate strongyle species. Additionally, questionnaire data was analysed using mixed-effect regression to identify potential risk factors associated with parasite occurrences and egg shedding intensity.

RESULTS

On 15 of 17 farms nematode eggs were detected. Ascaris suum, strongyles and T. suis were detected on 82%, 70% and 35% of the 17 farms, respectively. Lungworms were detected on one out of four farms with access to pasture. Strongyloides ransomi was not detected. 32% (CI 28-36%), 27% (24-31%), 5% (4-7%) and 3% (0.9-8%) of the samples where tested positive for strongyles, A. suum, T. suis and lungworms, respectively. The nemabiome analysis revealed three different strongyle species, with O. dentatum being the most common (mean 93.9%), followed by O. quadrispinulatum (5.9%) and the hookworm Globocephalus urosubulatus (0.1%). The bivariate and multivariate risk factor analyses showed among others that cleaning once a week compared to twice a week increased the odds significantly for being infected with A. suum (OR 78.60) and strongyles (2077.59). Access to pasture was associated with higher odds for A. suum (43.83) and strongyles (14.21). Compared to shallow litter systems, deep litter and free range systems resulted in significant higher odds for strongyles (85.74, 215.59, respectively) and T. suis (200.33, 623.08).

CONCLUSIONS

Infections with A. suum, O. dentatum, O. quadrispinulatum, T. suis, Metastrongylus spp. and G. urosubulatus are present in German outdoor-reared pigs. This is the first report of G. urosubulatus in domestic pigs in Europe. Metabarcoding based on the ITS-2 region is a suitable tool to analyse the porcine nemabiome. Furthermore, management practices have the potential of reducing the risk of parasite infections.

Temporal dynamics of microbial composition and antibiotic resistome in fermentation bed culture pig farms across various ages

The discharge from pig farms presents significant challenges to the environment and human health, specifically regarding the dissemination of antimicrobial resistance (AMR). Fermentation bed culture has emerged as an increasingly popular and environmentally friendly pig farming model in China, as it minimizes the release of harmful substances into the environment. However, there remains a limited understanding of the occurrence and dynamics of microbiome and antibiotic resistome in fermentation bed culture. Herein, we collected fermentation bed materials (FBM) from four fermentation bed culture pig farms with varying service ages and investigated their bacterial communities, antibiotic resistance genes (ARGs), mobile genetic elements (MGEs), metal resistance genes (MRGs) and potential antibiotic-resistant bacterial hosts through metagenomics. Pseudomonadota, Actinomycetota, Bacteroidota and Bacillota were identified as the dominant phyla present in the FBM. In total, we detected 258 unique ARGs in the FBM samples, with 79 core ARGs shared by all FBM samples, accounting for 95 % of the total ARG abundance. Our results revealed significant variations in microbial communities and ARG profiles across varying service ages of FBM. Compared to long-term FBW, short-term FBM exhibited higher numbers and abundances of ARGs, MRGs and MGEs, along with higher levels of potential bacterial pathogens and high-risk ARGs. Further analysis of metagenome-assembled genome (MAG) indicated that the putative hosts of ARGs primarily belonged to Pseudomonadota, Actinomycetota and Bacillota. Alarmingly, among the 80 recovered ARG-carrying MAGs, 23 MAGs encoded multi-resistance, including clinically significant species that require urgent attention. Overall, this study provided valuable insights into the temporal patterns of antibiotic resistome and bacterial communities within FBM, enhancing our understanding of FBM in pig farming. The findings could potentially contribute to the development of effective strategies for evaluating and regulating fermentation bed culture practices in pig farming.

Occurrence of Intestinal Parasites and Its Impact on Growth Performance and Carcass Traits of Pigs Raised Under Near-Organic Conditions

Parasite infection is a common problem in organic pig production, which can compromise health and growth of pigs, threaten food safety of pork products, and cause economic losses to organic farmers. To develop management strategies for controlling parasites, we evaluated intestinal parasite infection in pigs at different ages and of different sexes, and investigated whether parasite infection influences growth performance and carcass traits in a cross-sectional study. Fecal samples were collected from pigs (n = 298) raised under near-organic standards during nursery, growing, finishing, and gestating phases for analysis of fecal egg counts (FEC) of Ascaris suum, Trichuris suis, and Oesophagostomum spp. Ascaris suum eggs were not detected in the feces of nursery pigs. Eggs of Ascaris suum were found in 45%, 74%, and 0% of fecal samples of growing pigs, finishing pigs, and gestating sows, respectively, after false-positive adjustment (P < 0.001). Mean FEC of Ascaris suum was higher in infected finishing pigs than in infected growing pigs [2,502 vs. 724 eggs per gram (epg), P < 0.001]. No differences in percent of Ascaris suum positive samples or FEC of Ascaris suum were detected between sexes. Growth performance and carcass traits were not different between non-infected pigs and those infected with Ascaris suum. All pigs (n = 32) examined at slaughter had white spots on the liver, and 78% harbored Ascaris suum worms. Trichuris suis eggs were not detected in any fecal samples. Eggs of Oesophagostomum spp. were found in 7%, 0%, 1%, and 9% of fecal samples of nursery pigs, growing pigs, finishing pigs, and gestating sows, respectively, with a maximum FEC of 40 epg in all age groups. These results indicate Ascaris suum was the predominant parasite infecting growing and finishing pigs in the herds studied. To control A. suum infection, future research should investigate the efficacy of treating pigs with organically approved anthelmintics during the growing phase of production.

Management practices related to the control of gastrointestinal parasites on Swedish pig farms

Background

Internal parasites are common in pigs worldwide and may induce clinical disease or subclinical infections with negative effects such as poor weight gain and reduced welfare, which in turn affect productivity. Effective parasite control to reduce the negative impact of parasitic infections demands a combination of antiparasitic drugs as well as various hygiene and biosecurity practices. The aim of this study was to obtain information on current management practices and parasite control routines used on Swedish pig farms using an online questionnaire.

Results

Antiparasitic drugs were used on 69% of the farms routinely and were mainly administered to sows just prior to farrowing. Less than 5% of the herds conducted faecal analysis for parasites. Batchwise, age segregated rearing was common and overall, it was practiced for piglets, growers, and fatteners on 88, 80 and 75% of the farms, respectively. Large and medium sized farms appeared to apply stricter hygiene and biosecurity measures to the growing pigs compared to small farms. Dry sows were mainly housed in groups on deep litter straw beds and cleaning, as well as disinfection, between each group was less common compared to what was practiced for growing pigs. Outdoor access was rare and only occurred on organic and small farms. Most of the farms, 54, 74 and 82% of small, medium, and large sized herds respectively, reported to have less than 5% white spot lesions, caused by migrating A. suum larvae, registered at slaughter.

Conclusion

Several risk factors for parasite infections, such as bedding material, group housing and solid floors, are mandatory requirements by national law. However, it was evident from this study that although strategic hygiene and biosecurity practices appeared common, they were not practiced in all herds and less so for dry sows. Antiparasitic drugs were used frequently and mainly through routine prophylactic treatments without prior testing for parasites. A holistic approach is necessary when designing efficient parasite control programs, and it is essential that management factors and routine monitoring of parasites are given attention. This to achieve efficient parasite control and reduce the risk of unnecessary use of antiparasitic drugs.

Supplementary Information

The online version contains supplementary material available at 10.1186/s40813-021-00193-3.

Endoparasites in Sows and Selected Reproduction Parameters

The aim of the study was to analyze infection of sows with endoparasites depending on their physiological phase and length of exploitation, as well as to determine the effects of infection on selected parameters of reproductive performance. 300 fecal samples collected from the same 75 sows in 4 phases of the production cycle (dry sows, low pregnancy, high pregnancy, lactation) were tested in the experiment. Species and gender diversity, prevalence, OPG and EPG were determined in the study. These parameters were compared in terms of the physiological phase and the length of exploitation. Selected parameters of reproductive performance of sows were also examined, which were compared taking into account the length of exploitation and sows infection with individual parasites.

The study showed that the entire population was infected with two parasites at all physiological phases: Eimeria spp. (17% prevalence, 2275 OPG) and Ascaris suum (5% prevalence, EPG 79). The presence of parasites from Eimeria genus (prevalence 40%, OPG 2976) in sows exploited for 1 year had a negative effect on some parameters of their reproduction performance. Infected sows, compared to noninfected ones, were characterized by a lower number of live piglets (by 0.21 heads) (p≤0.05), a higher number of stillborn piglets (by 0.21 heads) (p≤0.05), as well as lower daily weight gains of piglets (by 15 g) (p≤0.05), which contributed to their lower weaning body weight (by 0.45 kg) (p≤0.05).

Effect of strategic deworming on Ascaris suum exposure and technical performance parameters in fattening pigs

The aim of this study was to investigate the effect of a strategic deworming program on Ascaris suum infection levels and technical performance parameters in fattening pigs. Eighteen fattening stables were selected and divided into two groups. Group 1 consisted of 9 stables in which the fattening pigs tested seropositive for Ascaris, indicative for the presence of Ascaris eggs in the stable, whereas group 2 consisted of 9 stables in which the fattening pigs tested seronegative for Ascaris, indicating of a low or absent environmental contamination with Ascaris eggs. The production in each stable was monitored for a period of 7 consecutive fattening rounds. The first of these 7 fattening rounds (i.e. round 0), during which no intervention took place in the deworming strategy applied in the stable, served as a historical control. A deworming program using 200 mg/ml fenbendazole oral suspension in drinking water for 2 days every 6 weeks was implemented for a period of 6 consecutive fattening rounds. For each fattening round and for each stable, technical performance parameters including average daily growth, feed conversion ratio, days in fattening and the percentage of affected livers were obtained from the producers. Blood was collected from 10 randomly selected animals per stable at the end of each fattening round and evaluated for the presence of anti-Ascaris antibodies using 2 different serological tests, namely the AsHb- and the L3-Lung ELISA. The serological results obtained indicated a lower exposure of the animals to Ascaris after the implementation of a strategic deworming program. A significant decline in anti-Ascaris antibody levels was detectable in the stables that originally tested positive for Ascaris and was already visible after one treatment round. The outcomes of hierarchical linear mixed models indicated that the level of L3-Lung antibody reactivity was a significant predictor of decreased ADG, increased FCR and prolonged DIF for the Ascaris-positive herds, indicating an effect of Ascaris infections on productivity.

Prediction of primal cuts by using an automatic ultrasonic device as a new method for estimating a pig-carcass slaughter and commercial value

The objective of the present work was to develop regression equations to estimate the percentage, weight (in g) and lean meat content (in %) of the primal cuts of a pig carcass by using Auto-Fom and to estimate the commercial value of the carcass on the slaughter line in a meat-processing plant. The research was conducted on 168 pig carcasses. From the whole pork carcass, only the most valuable cuts (i.e. belly, ham, loin, neck and shoulder) and also meat content in ham and shoulder were weighed at a 100 g accuracy and the percentage of each cut in carcass was calculated. Loin ‘eye’ height and belly-muscle thickness were also measured. The regression equations for the prediction of the primal-cut weights and their percentages in the pig carcasses were derived using the partial least-square procedure. The developed equations include 70 variables that are standard measurements taken with an Auto-Fom device. These equations have a satisfactory accuracy rate and are useful in estimating the yield of the elements, especially for loin, ham and belly content. Belly-muscle thickness (R2 = 0.98) and the percentage of meat in the ham (R2 = 0.93) can be estimated with a high precision. It was confirmed that the developed equations may be used in the current Auto-Fom software.

Occurrence of Intestinal Parasites in Pigs in Poland - the Influence of Factors Related to the Production System

Introduction

The aim of study was to estimate the prevalence and intensity of intestinal parasite infections in pigs in Poland and evaluate the influence of factors related to the production system on the infection intensity.

Material and Methods

A total of 70 pig farms of all Polish provinces, differing in the herd size and production system, were selected for the study. Fresh faecal samples were collected from all age groups: suckling piglets, weaners, fatteners, and lactating sows. Moreover, data were obtained regarding the size of the herd, the use of paddock and all-in/all-out system, the presence of diarrhoea, and the type of flooring.

Results

Parasite eggs or oocysts were detected in 57 of the 70 examined pig farms. Oesphagostomum spp. eggs were found in the largest number of farms (68.6%). Moreover, coccidia (42.9%), Ascaris suum(28.6%), Trichuris suis (21.4%), and Strongyloides spp. (11.4%) were detected. The highest prevalence of coccidia and Strongyloides spp. was found in suckling piglets, A. suum and T. suis in fatteners, and Oesphagostomum spp. in sows. Higher prevalence of parasites was detected in small farms than in medium and large farms, except the prevalence of coccidia, which was the highest in medium farms. Simultaneous infection with several parasites was more often detected than with one parasite. Odds ratio of parasites occurrence was higher in farms with paddock and litter floor and in farms which do not use all-in/all-out system.

Conclusion

Relatively high prevalence of intestinal parasites was found in pigs in Poland. Moreover, specific distribution of parasites in different age groups and farms of different size was observed. Influence of breeding factors on parasite prevalence was identified.

A polyphenol-enriched diet and Ascaris suum infection modulate mucosal immune responses and gut microbiota composition in pigs

Polyphenols are a class of bioactive plant secondary metabolites that are thought to have beneficial effects on gut health, such as modulation of mucosal immune and inflammatory responses and regulation of parasite burdens. Here, we examined the interactions between a polyphenol-rich diet supplement and infection with the enteric nematode Ascaris suum in pigs. Pigs were fed either a basal diet or the same diet supplemented with grape pomace (GP), an industrial by-product rich in polyphenols such as oligomeric proanthocyanidins. Half of the animals in each group were then inoculated with A. suum for 14 days to assess parasite establishment, acquisition of local and systemic immune responses and effects on the gut microbiome. Despite in vitro anthelmintic activity of GP-extracts, numbers of parasite larvae in the intestine were not altered by GP-supplementation. However, the bioactive diet significantly increased numbers of eosinophils induced by A. suum infection in the duodenum, jejunum and ileum, and modulated gene expression in the jejunal mucosa of infected pigs. Both GP-supplementation and A. suum infection induced significant and apparently similar changes in the composition of the prokaryotic gut microbiota, and both also decreased concentrations of isobutyric and isovaleric acid (branched-chain short chain fatty acids) in the colon. Our results demonstrate that while a polyphenol-enriched diet in pigs may not directly influence A. suum establishment, it significantly modulates the subsequent host response to helminth infection. Our results suggest an influence of diet on immune function which may potentially be exploited to enhance immunity to helminths.

Dietary cinnamaldehyde enhances acquisition of specific antibodies following helminth infection in pigs

Dietary phytonutrients such as cinnamaldehyde (CA) may contribute to immune function during pathogen infections, and CA has been reported to have positive effects on gut health when used as feed additive for livestock. Here, we investigated whether CA could enhance antibody production and specific immune responses during infection with an enteric pathogen. We examined the effect of dietary CA on plasma antibody levels in parasite-naïve pigs, and subsequently acquisition of humoral immune responses during infection with the parasitic nematode Ascaris suum. Parasite-naïve pigs fed diets supplemented with CA had higher levels of total IgA and IgG in plasma, and A. suum-infected pigs fed CA had higher levels of parasite-specific IgM and IgA in plasma 14days post-infection. Moreover, dietary CA increased expression of genes encoding the B-cell marker CD19, sodium/glucose co-transporter1 (SCA5L1) and glucose transporter 2 (SLC2A2) in the jejunal mucosa of A.suum-infected pigs. Dietary CA induced only limited changes in the composition of the prokaryotic gut microbiota of A. suum-infected pigs, and in vitro experiments showed that CA did not directly induce proliferation or increase secretion of IgG and IgA from lymphocytes. Our results demonstrate that dietary CA can significantly enhance acquisition of specific immune responses in pigs. The underlying mechanism remains obscure, but apparently does not derive simply from direct contact between CA and host lymphocytes and appears to be independent of the gut microbiota.

An in vitro larval migration assay for assessing anthelmintic activity of different drug classes against Ascaris suum

In vitro methods have been developed for the detection of anthelmintic resistance in a range of nematode species. However, the life cycle of Ascaris suum renders the commonly used egg hatch assay and larval development assay unusable. In this study we developed a combined multi-well culture and agar gel larval migration assay to test the effect of benzimidazole and tetrahydropyrimidin/imidazothiazole anthelmintics against nine isolates of A. suum collected from locations in China and Denmark. Drugs tested were thiabendazole, fenbendazole, mebendazole, levamisole, and pyrantel. The percentages of larvae that migrated to the surface of each treated and control well were used to calculate the drug concentration which inhibits 50% of the larvae migration (EC₅₀). The values of EC₅₀ of thiabendazole, fenbendazole, mebendazole, levamisole, and pyrantel against A. suum isolates ranged 74-150, 4.9-13.9, 2.3-4.3, 358-1150 and 1100-4000nM, respectively. This combined multi-well culture and agar gel larval migration assay was a sensitive bioassay for anthelmintic activity and could serve as an in vitro method to detect for lowered drug efficacy against A. suum or possibly to screen for anthelmintic drug candidates.