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Altunayar-Unsalan C, Unsalan O. Molecular Structure, Antioxidant Potential, and Pharmacokinetic Properties of Plant Flavonoid Blumeatin and Investigating Its Inhibition Mechanism on Xanthine Oxidase for Hyperuricemia by Molecular Modeling. ACS OMEGA 2024; 9:13284-13297. [PMID: 38524493 PMCID: PMC10956095 DOI: 10.1021/acsomega.3c10083] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/17/2023] [Revised: 02/22/2024] [Accepted: 02/27/2024] [Indexed: 03/26/2024]
Abstract
Hyperuricemia, which usually results in metabolic syndrome symptoms, is increasing rapidly all over the world and becoming a global public health issue. Xanthine oxidase (XO) is regarded as a key drug target for the treatment of this disease. Therefore, finding natural, nontoxic, and highly active XO inhibitors is quite important. To get insights into inhibitory potential toward XO and determine antioxidant action mechanism depending on the molecular structure, plant flavonoid blumeatin was investigated for the first time by Fourier transform infrared (FTIR) spectroscopy, density functional theory (DFT), ADME/Tox (absorption, distribution, metabolism, excretion, and toxicity) analysis, and molecular docking study. Theoretical findings indicated that blumeatin has high radical scavenging activity due to its noncoplanarity and over twisted torsion angle (-94.64°) with respect to its flavanone skeleton could explain that there might be a correlation between antioxidant activity and planarity of blumeatin. Based on the ADME/Tox analysis, it is determined that blumeatin has a high absorption profile in the human intestine (81.93%), and this plant flavonoid is not carcinogenic or mutagenic. A molecular docking study showed that Thr1010, Val1011, Phe914, and Ala1078 are the main amino acid residues participating in XO's interaction with blumeatin via hydrogen bonds.
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Affiliation(s)
- Cisem Altunayar-Unsalan
- Graduate
School of Natural and Applied Sciences, Ege University, 35100 Bornova, Izmir, Turkey
- Central
Research Testing and Analysis Laboratory Research and Application
Center, Ege University, 35100 Bornova, Izmir, Turkey
| | - Ozan Unsalan
- Department
of Physics, Faculty of Science, Ege University, 35100 Bornova, Izmir, Turkey
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Burak Sarigüney A, Karakaş Sarikaya E, Pehlivanoğlu S. Determining Stable Structure and in Vitro Antiproliferative Properties of a Novel 3-(2-((4-Trifluoromethyl)phenyl)amino)thiazol-4-yl)-2H-chromen-2-one Molecule. Chem Biodivers 2024; 21:e202301216. [PMID: 37870095 DOI: 10.1002/cbdv.202301216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2023] [Revised: 10/22/2023] [Accepted: 10/22/2023] [Indexed: 10/24/2023]
Abstract
Since coumarin and thiazole derivatives are known to have antioxidant properties, a novel derivative was synthesized in this article. 3-(2-((4-(trifluoromethyl)phenyl)amino)thiazol-4-yl)-2H-chromen-2-one (ATC) was synthesized as a novel compound with high yield and characterized by Raman, FT-IR, 13 C-NMR, and 1 H-NMR spectroscopic procedures and DFT calculations. In this study, the potential in vitro antiproliferative properties of the ATC compound were evaluated on colorectal cancer (HT29) and melanoma (SK-MEL-30) cell lines. According to the results, the compound was found to be significantly active, approximately 2.6-fold, against melanoma cells compared to healthy fibroblast (L929) cells. Unlike melanoma cells, the compound did not have any adverse effects on colorectal cancer cells. Due to these findings, the compound can be harnessed as a promising antiproliferative drug candidate for preclinical studies against melanoma.
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Affiliation(s)
- Ahmet Burak Sarigüney
- Department of Basic Sciences, Necmettin Erbakan University, Faculty of Engineering, Konya, 42090, Turkey
| | - Ebru Karakaş Sarikaya
- Department of Basic Sciences, Necmettin Erbakan University, Faculty of Engineering, Konya, 42090, Turkey
| | - Suray Pehlivanoğlu
- Department of Molecular Biology and Genetics, Necmettin Erbakan University, Faculty of Science, Konya, 42090, Turkey
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Saoudi O, Lasrem A, Ghaouar N. Studies of the behavior of reverse nonionic surfactant Pluronic 31R1 in aqueous and Propylammonium acetate (PAAc) ionic liquid solutions. JOURNAL OF POLYMER RESEARCH 2020. [DOI: 10.1007/s10965-020-02315-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Rather Z, Banday JA, Chisti H. Spectroscopic, X‐ray Crystal, DFT and In Vitro Analysis of 3‐(2,4‐Dimethoxy‐3‐(3‐methylbut‐2‐en‐1‐yl)phenyl) Acrylic Acid. ChemistrySelect 2020. [DOI: 10.1002/slct.202001491] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Zubaid‐ul‐khazir Rather
- Department of ChemistryNational Institute of Technology Srinagar Srinagar 190006, J & K India
| | - Javid A. Banday
- Department of ChemistryNational Institute of Technology Srinagar Srinagar 190006, J & K India
| | - Hamida‐Tun‐Nisa Chisti
- Department of ChemistryNational Institute of Technology Srinagar Srinagar 190006, J & K India
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Arivazhagan M, Subhasini VP, Kavitha R. Density functional theory investigations on the conformational stability, molecular structure and vibrational spectra of 6-methyl-2-chromenone. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2014; 128:527-539. [PMID: 24691367 DOI: 10.1016/j.saa.2014.02.093] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2013] [Revised: 02/12/2014] [Accepted: 02/16/2014] [Indexed: 06/03/2023]
Abstract
The Fourier-transform infrared and FT-Raman spectra of 6-methyl-2-chromenone (6M2C) was recorded in the region 4000-400 cm(-1) and 3500-50 cm(-1) respectively. Quantum chemical calculations of energies, geometrical structure and vibrational wavenumbers of 6M2C were carried out by density functional theory (DFT/B3LYP and LSDA) method with 6-311++G(d,p) basis set. The difference between the observed and scaled wavenumber values of most of the fundamentals is very small. The values of the total dipole moment (μ) and the first order hyperpolarizability (β) of the investigated compound were computed using B3LYP/6-311++G(d,p) calculations. The calculated results also show that 6M2C might have microscopic non-linear optical (NLO) behaviour with non-zero values. A detailed interpretation of infrared and Raman spectra of 6M2C is also reported. The calculated HOMO-LUMO energy gap shows that charge transfer occur within the molecule. The molecular electrostatic potential map shows that the negative potential sites are on the electronegative atoms as well as the positive potential sites are around the hydrogen atoms. The NMR spectrum is used in conjunction with other forms of spectroscopy and chemical analysis to determinate the structures of complicated organic molecules.
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Affiliation(s)
- M Arivazhagan
- Department of Physics, A.A. Government Arts College, Musiri, Tiruchirappalli 621201, TN, India.
| | - V P Subhasini
- Department of Physics, Jeppiaar Engineering College, Chennai 600119, TN, India
| | - R Kavitha
- Department of Physics, Saranathan Engineering College, Tiruchirappalli 620012, TN, India
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Moghanian H, Mobinikhaledi A, Monjezi R. Synthesis, spectroscopy (vibrational, NMR and UV–vis) studies, HOMO–LUMO and NBO analysis of 8-formyl-7-hydroxy-4-methylcoumarin by ab initio calculations. J Mol Struct 2013. [DOI: 10.1016/j.molstruc.2013.08.043] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Karakaş Sarıkaya E, Dereli Ö. Molecular structure and vibrational spectra of 7-Methoxy-4-methylcoumarin by density functional method. J Mol Struct 2013. [DOI: 10.1016/j.molstruc.2013.08.024] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Arjunan V, Santhanam R, Sakiladevi S, Marchewka M, Mohan S. Synthesis and characterization of an anticoagulant 4-hydroxy-1-thiocoumarin by FTIR, FT-Raman, NMR, DFT, NBO and HOMO–LUMO analysis. J Mol Struct 2013. [DOI: 10.1016/j.molstruc.2013.01.014] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Joseph L, Sajan D, Reshmy R, Arun Sasi BS, Erdogdu Y, Thomas KK. Vibrational spectra, structural conformations, scaled quantum chemical calculations and NBO analysis of 3-acetyl-7-methoxycoumarin. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2012; 99:234-247. [PMID: 23078790 DOI: 10.1016/j.saa.2012.07.084] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2012] [Revised: 05/20/2012] [Accepted: 07/05/2012] [Indexed: 06/01/2023]
Abstract
The powder form NIR-FT Raman and FT-IR spectra of 3-acetyl-7-methoxycoumarin (3A7MC) have been recorded in the regions 4000-400 and 3500-100 cm(-1), respectively. The equilibrium geometry, vibrational frequencies, band intensities, NMR spectra, NBO analysis and UV-Vis spectral studies of the most stable conformer have been calculated by density functional B3LYP method with the 6-311G(d,p) basis set. A complete vibrational analysis has been attempted on the basis of experimental infrared and Raman spectra, the calculated wavenumber and intensity of the vibrational bands and the potential energy distribution over the internal coordinates. Information about the size, shape, charge density distribution and site of chemical reactivity of the molecules has been obtained by mapping the electron density isosurface with electrostatic potential surfaces (ESP). Natural bond orbital analysis has been carried out to understand the nature of different interactions responsible for the electron delocalization and the intramolecular charge transfer between the orbitals (n→π(∗), n→σ(∗), π→π(∗)).
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Affiliation(s)
- Lynnette Joseph
- Department of Physics, Bishop Moore College, Mavelikara, Alappuzha 690110, Kerala, India
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Udaya Sri N, Chaitanya K, Prasad MVS, Veeraiah V, Veeraiah A. FT-IR, FT-Raman and UV-Vis spectra and DFT calculations of 3-cyano-4-methylcoumarin. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2012; 97:728-736. [PMID: 22892370 DOI: 10.1016/j.saa.2012.07.055] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2012] [Revised: 06/29/2012] [Accepted: 07/11/2012] [Indexed: 06/01/2023]
Abstract
The vibrational and electronic spectra of 3-cyano-4-methylcoumarin (3C4MC) are reported and discussed. In this work the structural properties, vibrational frequencies and electronic spectra of 3C4MC have been investigated extensively using density functional theory (DFT) employing B3LYP exchange correlation with the normal basis level 6-31G(d,p). NBO and HOMO, LUMO analysis has been carried out. The geometries and normal modes of vibrations obtained from B3LYP calculations are in good agreement with the experimentally observed data.
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Affiliation(s)
- N Udaya Sri
- Molecular Spectroscopy Laboratories, Department of Physics, Andhra University, Visakhapatnam, India
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Mariappan G, Sundaraganesan N, Manoharan S. The spectroscopic properties of anticancer drug Apigenin investigated by using DFT calculations, FT-IR, FT-Raman and NMR analysis. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2012; 95:86-99. [PMID: 22617215 DOI: 10.1016/j.saa.2012.04.089] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2012] [Revised: 04/16/2012] [Accepted: 04/18/2012] [Indexed: 06/01/2023]
Abstract
The FT-Raman and FT-Infrared spectra of solid Apigenin sample were measured in order to elucidate the spectroscopic properties of title molecule in the spectral range of 3500-50 cm(-1) and 4000-400 cm(-1), respectively. The recorded FT-IR and FT-Raman spectral measurements favor the calculated (by B3LYP/6-31G(d,p) method) structural parameters which are further supported by spectral simulation. Additional support is given by the collected (1)H and (13)C NMR spectra recorded with the sample dissolved in DMSO. The predicted chemical shifts at the B3LYP/6-31G(d) level obtained using the Gauge-Invariant Atomic Orbitals (GIAO) method with and without inclusion of solvent using the Polarizable Continuum Model (PCM). By using TD-DFT method, electronic absorption spectra of the title compound have been predicted and a good agreement with the TD-DFT method and the experimental one is determined. The UV-visible absorption spectra of the compound that dissolved in Ethanol, Methanol and DMSO were recorded in the range of 800-200 nm. The formation of hydrogen bond and the most possible interaction are explained using natural bond orbital (NBO) analysis. In addition, the molecular electrostatic potential (MEP), frontier molecular orbitals (FMO) analysis and atomic charges of the title compound were investigated using theoretical calculations. The results are discussed herein and compared with similar molecules whenever appropriate.
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Affiliation(s)
- G Mariappan
- Department of Physics (Engg.), Annamalai University, Annamalainagar 608 002, India
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Sajan D, Erdogdu Y, Reshmy R, Dereli Ö, Thomas KK, Hubert Joe I. DFT-based molecular modeling, NBO analysis and vibrational spectroscopic study of 3-(bromoacetyl)coumarin. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2011; 82:118-125. [PMID: 21831702 DOI: 10.1016/j.saa.2011.07.013] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2011] [Revised: 06/30/2011] [Accepted: 07/03/2011] [Indexed: 05/31/2023]
Abstract
The NIR-FT Raman and FT-IR spectra of 3-(bromoacetyl)coumarin (BAC) molecule have been recorded and analyzed. Density functional theory (DFT) calculation of two BAC conformers has been performed to find the optimized structures and computed vibrational wavenumbers of the most stable one. The obtained vibrational wavenumbers and optimized geometric parameters were seen to be in good agreement with the experimental data. Characteristic vibrational bands of the pyrone ring and methylene and carbonyl groups have been identified. The lowering of HOMO-LUMO energy gap clearly explains the charge transfer interactions taking place within the molecule.
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Affiliation(s)
- D Sajan
- Department of Physics, Bishop Moore College, Mavelikara, Alappuzha 690110, Kerala, India
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Ramoji A, Yenagi J, Tonannavar J, Jadhav VB, Kulkarni MV. Vibrational and ab initio studies of 3-acetyl-6-bromocoumarin and 3-acetyl-6-methylcoumarin. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2010; 77:1039-1047. [PMID: 20855229 DOI: 10.1016/j.saa.2010.08.070] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2010] [Revised: 08/17/2010] [Accepted: 08/26/2010] [Indexed: 05/29/2023]
Abstract
Infrared absorption and Raman spectra (3500-50 cm(-1)) of 3-acetyl-6-bromocoumarin and 3-acetyl-6-methylcoumarin have been measured and interpreted, aided by electronic structure calculations at RHF and B3LYP using 6-31(d, p) basis set. It has been determined that the rotation of the acetyl group with respect to the coumarin ring results in three conformers--two trans and one cis--for each molecule, with one trans conformer being the most stable in both cases. There are significant changes in the vibrational structure as characterized by positions and intensities of certain modes in going from 3-acetyl-6-bromocoumarin to 3-acetyl-6-methylcoumarin. The carbonyl stretching mode of the pyrone ring is stable in both molecules whereas the same mode in acetyl groups is not. Ring stretching vibrations are coupled to C-H in-plane bending vibrations. Down-shifting of frequencies of methyl vibrations in acetyl group occurs vis-à-vis methyl vibrations in 3-acetyl-6-methylcoumarin. A strong Raman band at 126 cm(-1) in both molecules is structure-independent non-genuine mode, correlated to lattice vibrations in the solid phase.
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Affiliation(s)
- Anuradha Ramoji
- Institute for Physical Chemistry, Friedrich Schiller University, Jena, Germany
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Sıdır İ, Sıdır YG, Kumalar M, Taşal E. Ab initio Hartree–Fock and density functional theory investigations on the conformational stability, molecular structure and vibrational spectra of 7-acetoxy-6-(2,3-dibromopropyl)-4,8-dimethylcoumarin molecule. J Mol Struct 2010. [DOI: 10.1016/j.molstruc.2009.11.023] [Citation(s) in RCA: 150] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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