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Guo Z, Wei C, Wang S, Qi F, He Z, Majeed U, Huang J. Crystal structure analysis of three (E)-N-(3-methyl, 5-fluorinephenyl)-2-(4-substituted benzylidene)thiosemicarbazone derivatives: Experimental and theoretical studies. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131383] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Rocha M, Piro OE, Echeverría GA, Pastoriza AC, Sgariglia MA, Soberón JR, Gil DM. Co(II), Ni(II) and Cu(II) ternary complexes with sulfadiazine and dimethylformamide: Synthesis, spectroscopic characterization, crystallographic study and antibacterial activity. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2018.09.008] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Gil DM, Salomón FF, Echeverría GA, Piro OE, Pérez H, Altabef AB. A detailed exploration of intermolecular interactions in 4-(4-dimethylaminobenzylideneamino)-N-(5-methyl-3-isoxazolyl)benzenesulfonamide and related Schiff bases: Crystal structure, spectral studies, DFT methods, Pixel energies and Hirshfeld surface analysis. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2017; 185:286-297. [PMID: 28595154 DOI: 10.1016/j.saa.2017.05.066] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2017] [Revised: 05/26/2017] [Accepted: 05/29/2017] [Indexed: 06/07/2023]
Abstract
The Schiff base of the title has been synthesized and its crystal structure determined by single-crystal X-ray diffraction. The compound was characterized by IR, Raman, 1H NMR, 13C NMR and electronic absorption spectra. DFT calculations provide the quantum chemical basis for the observed molecular conformation. A study of intermolecular interactions of the title compound is compared with seven other closely related structures and reveals that molecules in most of the compounds are linked by a cooperative effect of strong and weak hydrogen bonds, CH…π, and π…π stacking interactions, and also lp…π contacts. Lattice energy calculations indicate that the dispersion component is the major contribution, with the coulombic term playing a significant role in the total energy. Interaction energies for molecular pairs involving NH···N bonds indicate a dominant contribution to packing stabilization coming from coulomb component. Hirshfeld surfaces and 2D-fingerprint plots allowed us to visualize different intermolecular contacts and its relative contributions to total surface in each compound. The analysis of electrostatic potential (ESP) maps correlates well with the computed energies providing evidences on the dominant electrostatic nature of NH···N and NH···O interactions.
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Affiliation(s)
- Diego M Gil
- INQUINOA (CONICET-UNT), Facultad de Bioquímica, Química y Farmacia, Universidad Nacional de Tucumán, San Lorenzo 456, T4000CAN San Miguel de Tucumán, Argentina.
| | - Fernando F Salomón
- INQUINOA (CONICET-UNT), Facultad de Bioquímica, Química y Farmacia, Universidad Nacional de Tucumán, San Lorenzo 456, T4000CAN San Miguel de Tucumán, Argentina
| | - G A Echeverría
- Departamento de Física, Facultad de Ciencias Exactas, Universidad Nacional de La Plata y IFLP (CONICET, CCT-La Plata), C. C. 67, 1900 La Plata, Argentina
| | - Oscar E Piro
- Departamento de Física, Facultad de Ciencias Exactas, Universidad Nacional de La Plata y IFLP (CONICET, CCT-La Plata), C. C. 67, 1900 La Plata, Argentina
| | - Hiram Pérez
- Departamento de Química General e Inorgánica, Facultad de Química, Universidad de la Habana, Habana 10400, Cuba.
| | - Aida Ben Altabef
- INQUINOA (CONICET-UNT), Facultad de Bioquímica, Química y Farmacia, Universidad Nacional de Tucumán, San Lorenzo 456, T4000CAN San Miguel de Tucumán, Argentina.
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Gil DM, Tuttolomondo ME, Blomeyer S, Reuter CG, Mitzel NW, Altabef AB. Gas-phase structure of 2,2,2-trichloroethyl chloroformate studied by electron diffraction and quantum-chemical calculations. Phys Chem Chem Phys 2016; 18:393-402. [PMID: 26617390 DOI: 10.1039/c5cp05295e] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
The molecular structure and conformational properties of 2,2,2-trichloroethyl chloroformate, ClC(O)OCH2CCl3 were determined experimentally using gas-phase electron diffraction (GED) and theoretically based on quantum-chemical calculations at the MP2 and DFT levels of theory. Further experimental measurements such as UV-visible, IR and Raman spectroscopy were complemented with the corresponding theoretical studies. All experimental results and calculations confirm the presence of two conformers namely anti-gauche (C1 symmetry) and anti-anti (Cs symmetry). The conformational preference was rationalised by NBO and AIM analyses. Molecular properties such as ionisation potential, electronegativity, chemical potential, chemical hardness and softness were deduced from HOMO-LUMO analyses. The TD-DFT approach was applied to assign the electronic transitions observed in the UV-visible spectrum. A detailed interpretation of the infrared and Raman spectra of the title compound are reported. Using calculated frequencies as a guide, IR and Raman spectra also provide evidence for the presence of both C1 and Cs conformers.
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Affiliation(s)
- Diego M Gil
- INQUINOA (CONICET-UNT), Instituto de Química Física, Facultad de Bioquímica, Química y Farmacia, Universidad Nacional de Tucumán, San Lorenzo 456, T4000CAN. S. M. de Tucumán. R., Argentina.
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Gil DM, Defonsi Lestard ME, Estévez-Hernández O, Duque J, Reguera E. Quantum chemical studies on molecular structure, spectroscopic (IR, Raman, UV-Vis), NBO and HOMO-LUMO analysis of 1-benzyl-3-(2-furoyl) thiourea. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 145:553-562. [PMID: 25801444 DOI: 10.1016/j.saa.2015.02.071] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2014] [Revised: 12/22/2014] [Accepted: 02/18/2015] [Indexed: 06/04/2023]
Abstract
Vibrational and electronic spectra for 1-benzyl-3-(2-furoyl) thiourea were calculated by using density functional method (B3LYP) with different basis sets. The complete assignment of all vibrational modes was performed on basis of the calculated frequencies and comparing with the reported IR and Raman spectra for that thiourea derivative. UV-visible absorption spectra of the compound dissolved in methanol were recorded and analyzed using time dependent density functional theory (TD-DFT). The calculated values for the geometrical parameters of the title compound are consistent with the ones reported from XRD studies. The stability of the molecule, related to hyper-conjugative interactions, and electron delocalization were evaluated using natural bond orbital (NBO) analysis. Intra-molecular interactions were studied by AIM approach. The HOMO and LUMO analysis are used to determine the charge transfer within the molecule. Molecular electrostatic potential map was performed by the DFT method.
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Affiliation(s)
- Diego M Gil
- INQUINOA-UNT-CONICET, Instituto de Química Física, Facultad de Bioquímica, Química y Farmacia, Universidad Nacional de Tucumán, San Lorenzo 456, T4000CAN, San Miguel de Tucumán, Argentina.
| | - M E Defonsi Lestard
- INQUINOA-UNT-CONICET, Instituto de Química Física, Facultad de Bioquímica, Química y Farmacia, Universidad Nacional de Tucumán, San Lorenzo 456, T4000CAN, San Miguel de Tucumán, Argentina
| | - O Estévez-Hernández
- IMRE, Instituto de Ciencia y Tecnología de Materiales, Universidad de La Habana, Zapata y G, Vedado, La Habana, Cuba; CICATA-IPN, Centro de Investigación en Ciencia Aplicada y Tecnología de Avanzada, Instituto Politécnico Nacional, Legaria 694, México, DF, Mexico
| | - J Duque
- IMRE, Instituto de Ciencia y Tecnología de Materiales, Universidad de La Habana, Zapata y G, Vedado, La Habana, Cuba; CICATA-IPN, Centro de Investigación en Ciencia Aplicada y Tecnología de Avanzada, Instituto Politécnico Nacional, Legaria 694, México, DF, Mexico
| | - E Reguera
- CICATA-IPN, Centro de Investigación en Ciencia Aplicada y Tecnología de Avanzada, Instituto Politécnico Nacional, Legaria 694, México, DF, Mexico
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Galván JE, Gil DM, Lanús HE, Altabef AB. Theoretical study on the molecular structure and vibrational properties, NBO and HOMO–LUMO analysis of the POX3 (X=F, Cl, Br, I) series of molecules. J Mol Struct 2015. [DOI: 10.1016/j.molstruc.2014.10.060] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Defonsi Lestard ME, Gil DM, Estévez-Hernández O, Erben MF, Duque J. Structural, vibrational and electronic characterization of 1-benzyl-3-furoyl-1-phenylthiourea: an experimental and theoretical study. NEW J CHEM 2015. [DOI: 10.1039/c5nj01210d] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The compound 1-benzyl-3-furoyl-1-phenylthiourea was synthesized and characterized through IR and Raman spectroscopy and its molecular structure was determined.
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Affiliation(s)
- María Eliana Defonsi Lestard
- INQUINOA (UNT-CONICET)
- Instituto de Química Física
- Facultad de Bioquímica
- Química y Farmacia
- Universidad Nacional de Tucumán
| | - Diego M. Gil
- INQUINOA (UNT-CONICET)
- Instituto de Química Física
- Facultad de Bioquímica
- Química y Farmacia
- Universidad Nacional de Tucumán
| | | | - Mauricio F. Erben
- CEQUINOR (UNLP, CONICET-CCT La Plata)
- Departamento de Química
- Facultad de Ciencias Exactas
- Universidad Nacional de La Plata
- La Plata
| | - Julio Duque
- IMRE
- Instituto de Ciencia y Tecnología de Materiales
- Universidad de La Habana
- La Habana
- Cuba
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Gil DM, Tuttolomondo ME, Ben Altabef A. DFT calculations of structure and vibrational properties of 2,2,2-trichloroethylacetate, CH(3)CO(2)CH(2)CCl(3). SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2014; 123:290-297. [PMID: 24407197 DOI: 10.1016/j.saa.2013.12.042] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2013] [Revised: 11/13/2013] [Accepted: 12/05/2013] [Indexed: 06/03/2023]
Abstract
The molecular structure and conformational properties of 2,2,2-trichloroethylacetate, CH(3)CO(2)CH(2)CCl(3), were determined by ab initio (MP2) and DFT quantum chemical calculations at different levels of theory. The theoretical study was complemented with experimental measurements such as IR and Raman spectroscopy. The experimental and calculations confirm the presence of two conformers, one with anti, gauche conformation (C1 symmetry) and another with anti, anti form (Cs symmetry). The conformational preference was studied using the total energy scheme, NBO and AIM analysis. The infrared spectra of CH(3)CO(2)CH(2)CCl(3) are reported in the liquid and solid phases and the Raman spectrum in liquid phase. Using calculated frequencies as a guide, evidence for both C1 and Cs conformers is obtained in the IR and Raman spectra.
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Affiliation(s)
- Diego M Gil
- INQUINOA, CONICET, Instituto de Química Física, Facultad de Bioquímica, Química y Farmacia, Universidad Nacional de Tucumán, San Lorenzo 456, T4000CAN Tucumán, Argentina
| | - María E Tuttolomondo
- INQUINOA, CONICET, Instituto de Química Física, Facultad de Bioquímica, Química y Farmacia, Universidad Nacional de Tucumán, San Lorenzo 456, T4000CAN Tucumán, Argentina
| | - Aída Ben Altabef
- INQUINOA, CONICET, Instituto de Química Física, Facultad de Bioquímica, Química y Farmacia, Universidad Nacional de Tucumán, San Lorenzo 456, T4000CAN Tucumán, Argentina.
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