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Celik S, Yurdakul S, Erdem B. New silver(I) complex as antibiotic candidate: Synthesis, spectral characterization, DFT, QTAIM and antibacterial investigations and docking properties. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.132902] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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Janani S, Rajagopal H, Muthu S, Aayisha S, Raja M, Irfan A. Structural, vibrational, electronic properties, hirshfeld surface analysis topological and molecular docking studies of N-[2-(diethylamino)ethyl]-2-methoxy-5-methylsulfonylbenzamide. Heliyon 2021; 7:e08186. [PMID: 34712858 PMCID: PMC8531569 DOI: 10.1016/j.heliyon.2021.e08186] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2021] [Revised: 07/25/2021] [Accepted: 10/13/2021] [Indexed: 12/01/2022] Open
Abstract
The theoretical (Freebase, Cationic species) and experimental investigations on the molecular structural, spectroscopic characterization, and electronic properties of N2M5MB are reported. The most stable structure of the N2M5MB was analysed by employing Density Functional Theory (DFT) at different functional such as B3LYP, PBEPBE, TPSSTPSS and IEF-PCM (Freebase) and Cationic (B3LYP, IEF-PCM)/ 6-311++G (d,p) basis set level. The Potential Energy Scan (PES) analysis has been employed to investigate the conformational preference of the title molecule. The optimized molecular geometry, vibrational assignments (FT-IR, FT-Raman) of wavenumbers have been performed for freebase, cationic species (Gas, PCM) for the individual modes of vibration. The experimental UV-Vis absorption spectrum was obtained and compared with the simulated (Freebase, Cationic species) Time-Dependent (TD-DFT-M062X) method. The FMO's, electron-hole distributions, HOMA, FLU, Hirshfeld surface analysis, Electrostatic potential surface (ESP), Fukui functions, and topological parameters were discussed. Molecular docking studies were performed for the N2M5MB (ligand) into the active site of targeted proteins (1H22, 4DTL, 5OV9) which belong to AChE inhibitors with the minimum binding energy was detected.
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Affiliation(s)
- S. Janani
- Department of Physics, Queen Mary's College, Chennai, 600004, Tamilnadu, India
- University of Madras, Chennai, 600005, Tamilnadu, India
| | - Hemamalini Rajagopal
- Department of Physics, Queen Mary's College, Chennai, 600004, Tamilnadu, India
- University of Madras, Chennai, 600005, Tamilnadu, India
| | - S. Muthu
- Department of Physics, Arignar Anna Govt. Arts College, Cheyyar, 604407, Tamilnadu, India
- Department of Physics, Puratchi Thalaivar Dr.M.G.R Govt. Arts and Science College, Uthiramerur 603406, Tamilnadu, India
| | - S. Aayisha
- Department of Physics, Meenakshi College for Women, Chennai, 600024, Tamilnadu, India
| | - M. Raja
- Department of Physics, Govt. Thirumagal Mills College, Gudiyattam, Vellore 632602, India
| | - Ahmad Irfan
- Department of Chemistry, College of Science, King Khalid University, P.O. Box 9004, Abha 61413, Saudi Arabia
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Hannah Clara T, Muthu S, Christian Prasana J. Quantum mechanical, spectroscopic and docking studies of (2E)-1-(4-aminophenyl)-3-(4-benzyloxyphenyl)-prop-2-en-1-one Chalcone derivative by density functional theory - A prospective respiratory drug. MATERIALS TODAY. PROCEEDINGS 2020; 50:2816-2825. [PMID: 33173755 PMCID: PMC7643630 DOI: 10.1016/j.matpr.2020.08.804] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/06/2020] [Revised: 08/06/2020] [Accepted: 08/20/2020] [Indexed: 11/29/2022]
Abstract
Theoretical investigations on the molecular geometry, vibrational and electronic environment of (2E)-1-(4-aminophenyl)-3-(4-benzyloxyphenyl)-prop-2-en-1-one (APBPP) are presented for the first time. The vibration frequencies simulated were thoroughly analysed employing DFT/B3LYP using 6-311++G(d,p) basis set and compared with experimental FT- Raman and FT- IR data which showed good agreement vice-versa. Optimised molecular equilibrium geometry of the title compound was carried out. Vibrational assignments of wave numbers with PED (potential energy distribution) was done using VEDA software and the quantum chemical calculations of the molecular geometry were scaled using quantum mechanics. The title molecule showcased excellent results on HOMO - LUMO energies, NMR chemical shifts, 3.73 eV band gap, electronegativity (χ), chemical potential (μ), softness (S), global hardness (η). The low softness value (0.261) and thehigh value of electrophilicity index (4.0323) explains the biological activity of the title molecule. The reactive sites of APBPP were thoroughly investigated by Mulliken charges, MEP (Molecular electrostatic Potential) and Fukui functions. Thermo dynamical environment of the title compound for different temperatures were studied which reveals the correlations between entropy (S), heat capacity (C) and enthalpy changes (H) with temperatures. The title compound was docked into the reactive sites of antiviral (SARS-CoV-1,2) and anticancer protein using molecular docking tool and it showed excellent results compared to the ongoing clinical trials. The paper explains the experimental analysis which are in line with the quantum calculations and presents an optimistic evidence via Molecular docking studies. The synthesized compound against various panels of microorganism projects its ability to be the most potential drug to treat various pathologies in pharmacy Industry.
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Affiliation(s)
- T Hannah Clara
- Department of Physics, Madras Christian College, Chennai 59, India
- University of Madras, Chennai 600005, India
| | - S Muthu
- Department of Physics, Aringnar Anna Government Arts College, Chennai 604 407, India
| | - Johanan Christian Prasana
- Department of Physics, Madras Christian College, Chennai 59, India
- University of Madras, Chennai 600005, India
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Synthesis, structural investigations, DFT studies, and neurotrophic activity of zinc complex with a multidentate ligand. MONATSHEFTE FUR CHEMIE 2020. [DOI: 10.1007/s00706-020-02696-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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Bolukbasi Yalcinkaya O, Yilmaz A, Ilhan Ceylan B. Solvent effects on UV–Vis and FT-IR spectra of indapamide combined with DFT calculations. CHEMICAL PAPERS 2020. [DOI: 10.1007/s11696-019-00945-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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6
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Vidhya V, Austine A, Arivazhagan M. Quantum chemical determination of molecular geometries and spectral investigation of 4-ethoxy-2, 3-difluoro benzamide. Heliyon 2019; 5:e02365. [PMID: 31844688 PMCID: PMC6895590 DOI: 10.1016/j.heliyon.2019.e02365] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2018] [Revised: 06/14/2019] [Accepted: 08/21/2019] [Indexed: 11/27/2022] Open
Abstract
The present work reports the application of density functional theory (DFT) at B3LYP with various basis sets which provide the relationship between the structural and spectral properties of 4-ethoxy-2, 3-difluoro benzamide (4EDFB). A Complete vibrational analysis has been performed at the density functional theory (DFT) method with various basis sets in the ground state. The results of vibrational wave numbers are in good agreement with the experimental spectra (Infrared and Raman). Energy gap of the molecule is evaluated using frontier molecular orbital energies (HOMO-LUMO). The frontier energy gap value reveals the chemical reactivity and intermolecular charge transfer occur within the molecule. Global chemical descriptors provide the local and global softness and local reactivity parameters used to identify the nucleophilic and electrophilic behavior of a specific site within the compound. The dimer structure is performed to evaluate the intermolecular hydrogen bond (O-H-O). The title molecule is capable of receiving second harmonic generation (SHG) is due to high value of hyperpolarizability indicates the NLO activity of the molecule. Apart from NLO entities, aromaticity and the molecular electrostatic potential surface (MEP) explain the hydrogen bonding and provide the reactive behavior of the molecule. The Mulliken population analysis leads to redistribution of electron density in the ring.
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Affiliation(s)
- V. Vidhya
- Department of Physics, Trichy Engineering College, Trichy, 621132, India
| | - A. Austine
- PG&Research Department of Physics, A.A.Government Arts College, Musiri, 621211, India
| | - M. Arivazhagan
- PG&Research Department of Physics, Government Arts College, Trichy, 620022, India
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Rajaei I, Mirsattari SN. Spectroscopic characteristic (FT-IR, 1 H, 13 C NMR and UV–Vis) and theoretical calculations (MEP, DOS, HOMO-LUMO, PES, NBO analysis and keto–enol tautomerism) of new tetradentate N,N′-bis(4-hydroxysalicylidene)-1,4-phenylenediamine ligand as chelating agent for the synthesis of dinuclear Co(II), Ni(II), Cu(II) and Zn(II) complexes. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.02.010] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Structural, intramolecular hydrogen bonding and vibrational studies on 3-amino-4-methoxy benzamide using density functional theory. J CHEM SCI 2017. [DOI: 10.1007/s12039-017-1227-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Tao Y, Han L, Li X, Han Y, Liu Z. Conformational stability and vibrational study of phenylacetyl chloride. J PHYS ORG CHEM 2015. [DOI: 10.1002/poc.3474] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Yaping Tao
- College of Physics and Electronic Information; Luoyang Normal University; Luoyang 471022 China
| | - Ligang Han
- College of Physics and Electronic Information; Luoyang Normal University; Luoyang 471022 China
| | - Xiaofeng Li
- College of Physics and Electronic Information; Luoyang Normal University; Luoyang 471022 China
| | - Yunxia Han
- College of Physics and Electronic Information; Luoyang Normal University; Luoyang 471022 China
| | - Zhaojun Liu
- College of Physics and Electronic Information; Luoyang Normal University; Luoyang 471022 China
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Demircioğlu Z, Kaştaş ÇA, Büyükgüngör O. The spectroscopic (FT-IR, UV-vis), Fukui function, NLO, NBO, NPA and tautomerism effect analysis of (E)-2-[(2-hydroxy-6-methoxybenzylidene)amino]benzonitrile. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 139:539-548. [PMID: 25579656 DOI: 10.1016/j.saa.2014.11.078] [Citation(s) in RCA: 57] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2014] [Revised: 10/17/2014] [Accepted: 11/23/2014] [Indexed: 06/04/2023]
Abstract
A new o-hydroxy Schiff base, (E)-2-[(2-hydroxy-6-methoxybenzylidene)amino]benzonitrile was isolated and investigated by experimental and theoretical methodologies. The solid state molecular structure was determined by X-ray diffraction method. The vibrational spectral analysis was carried out by using FT-IR spectroscopy in the range of 4000-400cm(-)(1). Theoretical calculations were performed by density functional theory (DFT) method using 6-31G(d,p) basis set. The results of the calculations were applied to simulated spectra of the title compound, which show excellent agreement with observed spectra. The UV-vis spectrum of the compound was recorded in the region 200-800 nm in several solvents and electronic properties such as excitation energies, and wavelengths were calculated by TD-DFT/B3LYP method. The most prominent transitions were corresponds to π→π∗. Hybrid density functional theory (DFT) was used to investigate the enol-imine and keto-amine tautomers of titled compound. The titled compound showed the preference of enol form, as supported by X-ray and spectroscopic analysis results. The geometric and molecular properties were compaired for both enol-imine and keto-amine forms. Additionally, geometry optimizations in solvent media were performed with the same level of theory by the integral equation formalism polarizable continuum (IEF-PCM). Stability of the molecule arises from hyperconjugative interactions, charge delocalization and intramolecular hydrogen bond has been analyzed using natural bond orbital (NBO) analysis. Mulliken population method and natural population analysis (NPA) have been studied. Also, condensed Fukui function and relative nucleophilicity indices calculated from charges obtained with orbital charge calculation methods (NPA). Molecular electrostatic potential (MEP) and non linear optical (NLO) properties are also examined.
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Affiliation(s)
- Zeynep Demircioğlu
- Department of Physics, Faculty of Arts and Sciences, Ondokuz Mayıs University, TR-55139 Kurupelit-Samsun, Turkey.
| | - Çiğdem Albayrak Kaştaş
- Department of Chemistry, Faculty of Arts and Science, Sinop University, TR-57000 Sinop, Turkey
| | - Orhan Büyükgüngör
- Department of Physics, Faculty of Arts and Sciences, Ondokuz Mayıs University, TR-55139 Kurupelit-Samsun, Turkey
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Tao Y, Han L, Han Y, Liu Z. Experimental and theoretical studies on the vibrational spectra of trans-3-phenylacryloyl chloride. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 137:892-898. [PMID: 25280337 DOI: 10.1016/j.saa.2014.09.025] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2014] [Revised: 08/23/2014] [Accepted: 09/11/2014] [Indexed: 06/03/2023]
Abstract
The infrared and Raman spectra of trans-3-phenylacryloyl chloride (TPC) were reported and compared with the theoretical results calculating at B3LYP/6-311++G (d, p) level. Both wavenumbers and intensities obtained from the experimental and theoretical spectra were in good agreement. A complete spectral assignment was made with the aid of potential energy distribution (PED) based on the scaled quantum mechanical (SQM) force field method. This study provided valuable insight for understanding the observed spectral features of TPC. Additionally, the HOMO-LUMO gap, molecular electrostatic potential (MEP) atomic charge distribution, and natural bond orbitals (NBO) were studied theoretically on the same basis set.
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Affiliation(s)
- Yaping Tao
- College of Physics and Electronic Information, Luoyang Normal University, Luoyang 471022, China.
| | - Ligang Han
- College of Physics and Electronic Information, Luoyang Normal University, Luoyang 471022, China
| | - Yunxia Han
- College of Physics and Electronic Information, Luoyang Normal University, Luoyang 471022, China
| | - Zhaojun Liu
- College of Physics and Electronic Information, Luoyang Normal University, Luoyang 471022, China
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12
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Kumru M, Küçük V, Kocademir M, Alfanda HM, Altun A, Sarı L. Experimental and theoretical studies on IR, Raman, and UV-Vis spectra of quinoline-7-carboxaldehyde. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 134:81-89. [PMID: 25004899 DOI: 10.1016/j.saa.2014.06.094] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2014] [Revised: 06/06/2014] [Accepted: 06/16/2014] [Indexed: 06/03/2023]
Abstract
Spectroscopic properties of quinoline-7-carboxaldehyde (Q7C) have been studied in detail both experimentally and theoretically. The FT-IR (4000-50 cm(-1)), FT-Raman (4000-50 cm(-1)), dispersive-Raman (3500-50 cm(-1)), and UV-Vis (200-400 nm) spectra of Q7C were recorded at room temperature (25 °C). Geometry parameters, potential energy surface about CCH(O) bond, harmonic vibrational frequencies, IR and Raman intensities, UV-Vis spectrum, and thermodynamic characteristics (at 298.15K) of Q7C were computed at Hartree-Fock (HF) and density functional B3LYP levels employing the 6-311++G(d,p) basis set. Frontier molecular orbitals, molecular electrostatic potential, and Mulliken charge analyses of Q7C have also been performed. Q7C has two stable conformers that are energetically very close to each other with slight preference to the conformer that has oxygen atom of the aldehyde away from the nitrogen atom of the quinoline.
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Affiliation(s)
- M Kumru
- Department of Physics, Faculty of Arts and Sciences, Fatih University, 34500 Istanbul, Turkey.
| | - V Küçük
- Department of Physics, Faculty of Arts and Sciences, Fatih University, 34500 Istanbul, Turkey
| | - M Kocademir
- Department of Physics, Faculty of Arts and Sciences, Fatih University, 34500 Istanbul, Turkey
| | - H M Alfanda
- Department of Physics, Faculty of Arts and Sciences, Fatih University, 34500 Istanbul, Turkey
| | - A Altun
- Department of Physics, Faculty of Arts and Sciences, Fatih University, 34500 Istanbul, Turkey
| | - L Sarı
- Department of Physics, Faculty of Arts and Sciences, Fatih University, 34500 Istanbul, Turkey
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Sert Y, Singer LM, Findlater M, Doğan H, Çırak Ç. Vibrational frequency analysis, FT-IR, DFT and M06-2X studies on tert-Butyl N-(thiophen-2yl)carbamate. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2014; 128:46-53. [PMID: 24657467 DOI: 10.1016/j.saa.2014.02.114] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2014] [Revised: 01/31/2014] [Accepted: 02/19/2014] [Indexed: 06/03/2023]
Abstract
In this study, the experimental and theoretical vibrational frequencies of a newly synthesized tert-Butyl N-(thiophen-2yl)carbamate have been investigated. The experimental FT-IR (4000-400 cm(-1)) spectrum of the molecule in the solid phase have been recorded. The theoretical vibrational frequencies and optimized geometric parameters (bond lengths and bond angles) have been calculated by using density functional theory (DFT/B3LYP: Becke, 3-parameter, Lee-Yang-Parr) and DFT/M06-2X (the highly parametrized, empirical exchange correlation function) quantum chemical methods with the 6-311++G(d,p) basis set by Gaussian 09W software, for the first time. The vibrational frequencies have been assigned using potential energy distribution (PED) analysis by using VEDA 4 software. The computational optimized geometric parameters and vibrational frequencies have been found to be in good agreement with the corresponding experimental data, and with related literature results. In addition, the highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) energies and the other related molecular energy values have been calculated and are depicted.
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Affiliation(s)
- Yusuf Sert
- Department of Physics, Faculty of Art & Sciences, Bozok University, Yozgat 66100, Turkey; Sorgun Vocational School, Bozok University, Yozgat 66100, Turkey.
| | - L M Singer
- Department of Chemistry & Biochemistry, Texas Tech University, Memorial Circle & Boston, Lubbock, TX 79409, USA
| | - M Findlater
- Department of Chemistry & Biochemistry, Texas Tech University, Memorial Circle & Boston, Lubbock, TX 79409, USA
| | - Hatice Doğan
- Department of Physics, Faculty of Art & Sciences, Bozok University, Yozgat 66100, Turkey
| | - Ç Çırak
- Department of Physics, Faculty of Art & Sciences, Erzincan University, Erzincan 24100, Turkey
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Demircioğlu Z, Albayrak Ç, Büyükgüngör O. Theoretical and experimental investigation of (E)-2-([3,4-dimethylphenyl)imino]methyl)-3-methoxyphenol: Enol–keto tautomerism, spectroscopic properties, NLO, NBO and NPA analysis. J Mol Struct 2014. [DOI: 10.1016/j.molstruc.2014.02.062] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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