1
|
Synthesis and spectroscopic study of three new oxadiazole derivatives with detailed computational evaluation of their reactivity and pharmaceutical potential. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.07.026] [Citation(s) in RCA: 75] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
|
2
|
Al-Tamimi AMS, Mary YS, Miniyar PB, Al-Wahaibi LH, El-Emam AA, Armaković S, Armaković SJ. Synthesis, spectroscopic analyses, chemical reactivity and molecular docking study and anti-tubercular activity of pyrazine and condensed oxadiazole derivatives. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.03.085] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
|
3
|
Kwong HC, Chidan Kumar CS, Mah SH, Chia TS, Quah CK, Loh ZH, Chandraju S, Lim GK. Novel biphenyl ester derivatives as tyrosinase inhibitors: Synthesis, crystallographic, spectral analysis and molecular docking studies. PLoS One 2017; 12:e0170117. [PMID: 28241010 PMCID: PMC5328250 DOI: 10.1371/journal.pone.0170117] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2016] [Accepted: 12/29/2016] [Indexed: 11/18/2022] Open
Abstract
Biphenyl-based compounds are clinically important for the treatments of hypertension and inflammatory, while many more are under development for pharmaceutical uses. In the present study, a series of 2-([1,1'-biphenyl]-4-yl)-2-oxoethyl benzoates, 2(a-q), and 2-([1,1'-biphenyl]-4-yl)-2-oxoethyl pyridinecarboxylate, 2(r-s) were synthesized by reacting 1-([1,1'-biphenyl]-4-yl)-2-bromoethan-1-one with various carboxylic acids using potassium carbonate in dimethylformamide at ambient temperature. Single-crystal X-ray diffraction studies revealed a more closely packed crystal structure can be produced by introduction of biphenyl moiety. Five of the compounds among the reported series exhibited significant anti-tyrosinase activities, in which 2p, 2r and 2s displayed good inhibitions which are comparable to standard inhibitor kojic acid at concentrations of 100 and 250 μg/mL. The inhibitory effects of these active compounds were further confirmed by computational molecular docking studies and the results revealed the primary binding site is active-site entrance instead of inner copper binding site which acted as the secondary binding site.
Collapse
Affiliation(s)
- Huey Chong Kwong
- School of Chemical Sciences, Universiti Sains Malaysia, Penang, Malaysia
| | - C. S. Chidan Kumar
- Department of Engineering Chemistry, Vidya Vikas Institute of Engineering & Technology, Visvesvaraya Technological University, Alanahalli, Mysuru, Karnataka, India
- * E-mail: (CKQ); (CSCK)
| | - Siau Hui Mah
- School of Biosciences, Taylor’s University, Lakeside Campus, Subang Jaya, Selangor, Malaysia
| | - Tze Shyang Chia
- X-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, Penang, Malaysia
| | - Ching Kheng Quah
- X-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, Penang, Malaysia
- * E-mail: (CKQ); (CSCK)
| | - Zi Han Loh
- School of Biosciences, Taylor’s University, Lakeside Campus, Subang Jaya, Selangor, Malaysia
| | - Siddegowda Chandraju
- Department of Sugar Technology & Chemistry, Sir M.V. PG Center, University of Mysore, Tubinakere, India
| | - Gin Keat Lim
- School of Chemical Sciences, Universiti Sains Malaysia, Penang, Malaysia
| |
Collapse
|
4
|
Gayathri R, Arivazhagan M. Understanding field variation, quantum chemical modeling and molecular orbital analyses of trans-3-(trans-4-imidazolyl) acrylic acid. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2016.10.085] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
|
5
|
Prashanth J, Reddy BV, Rao GR. Investigation of torsional potentials, molecular structure, vibrational properties, molecular characteristics and NBO analysis of some bipyridines using experimental and theoretical tools. J Mol Struct 2016. [DOI: 10.1016/j.molstruc.2016.03.062] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
|
6
|
Molecular geometry, NBO analysis, Hyperpolarizability and HOMO-LUMO energies of 2-azido-1-phenylethanone using Quantum chemical calculations. ACTA ACUST UNITED AC 2016. [DOI: 10.1016/j.matpr.2016.11.025] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
|
7
|
Kumar CSC, Kwong HC, Mah SH, Chia TS, Loh WS, Quah CK, Lim GK, Chandraju S, Fun HK. Synthesis and Crystallographic Insight into the Structural Aspects of Some Novel Adamantane-Based Ester Derivatives. Molecules 2015; 20:18827-46. [PMID: 26501248 PMCID: PMC6331964 DOI: 10.3390/molecules201018827] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2015] [Revised: 08/31/2015] [Accepted: 10/05/2015] [Indexed: 12/04/2022] Open
Abstract
Adamantyl-based compounds are commercially important in the treatments for neurological conditions and type-2 diabetes, aside from their anti-viral abilities. Their values in drug design are chronicled as multi-dimensional. In the present study, a series of 2-(adamantan-1-yl)-2-oxoethyl benzoates, 2(a-q), and 2-(adamantan-1-yl)-2-oxoethyl 2-pyridinecarboxylate, 2r, were synthesized by reacting 1-adamantyl bromomethyl ketone with various carboxylic acids using potassium carbonate in dimethylformamide medium at room temperature. Three-dimensional structures studied using X-ray diffraction suggest that the adamantyl moiety can serve as an efficient building block to synthesize 2-oxopropyl benzoate derivatives with synclinal conformation with a looser-packed crystal packing system. Compounds 2a, 2b, 2f, 2g, 2i, 2j, 2m, 2n, 2o, 2q and 2r exhibit strong antioxidant activities in the hydrogen peroxide radical scavenging test. Furthermore, three compounds, 2p, 2q and 2r, show good anti-inflammatory activities in the evaluation of albumin denaturation.
Collapse
Affiliation(s)
- C S Chidan Kumar
- Crystallography Unit, School of Physics, Universiti Sains Malaysia, Penang 11800, Malaysia.
- Department of Chemistry, Alva's Institute of Engineering & Technology, Visvesvaraya Technological University, Mijar, Moodbidri 574225, India.
| | - Huey Chong Kwong
- School of Chemical Sciences, Universiti Sains Malaysia, Penang 11800, Malaysia.
| | - Siau Hui Mah
- School of Biosciences, Taylor's University, Lakeside Campus, Subang Jaya 47500, Selangor, Malaysia.
| | - Tze Shyang Chia
- Crystallography Unit, School of Physics, Universiti Sains Malaysia, Penang 11800, Malaysia.
| | - Wan-Sin Loh
- Crystallography Unit, School of Physics, Universiti Sains Malaysia, Penang 11800, Malaysia.
| | - Ching Kheng Quah
- Crystallography Unit, School of Physics, Universiti Sains Malaysia, Penang 11800, Malaysia.
| | - Gin Keat Lim
- School of Chemical Sciences, Universiti Sains Malaysia, Penang 11800, Malaysia.
| | - Siddegowda Chandraju
- Department of Sugar Technology & Chemistry, University of Mysore, Sir M.V. PG Center, Mandya 571402, Karnataka, India.
| | - Hoong-Kun Fun
- Crystallography Unit, School of Physics, Universiti Sains Malaysia, Penang 11800, Malaysia.
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia.
| |
Collapse
|
8
|
Panicker CY, Varghese HT, Nayak PS, Narayana B, Sarojini BK, Fun HK, War JA, Srivastava SK, Van Alsenoy C. Infrared spectrum, NBO, HOMO-LUMO, MEP and molecular docking studies (2E)-3-(3-nitrophenyl)-1-[4-piperidin-1-yl]prop-2-en-1-one. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 148:18-28. [PMID: 25863456 DOI: 10.1016/j.saa.2015.03.065] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2014] [Revised: 01/25/2015] [Accepted: 03/05/2015] [Indexed: 06/04/2023]
Abstract
FT-IR spectrum of (2E)-3-(3-nitrophenyl)-1-[4-piperidin-1-yl]prop-2-en-1-one was recorded and analyzed. The vibrational wavenumbers were computed using HF and DFT quantum chemical calculations. The data obtained from wavenumber calculations are used to assign IR bands. Potential energy distribution was done using GAR2PED software. The geometrical parameters of the title compound are in agreement with the XRD results. NBO analysis, HOMO-LUMO, first and second hyperpolarizability and molecular electrostatic potential results are also reported. The possible electrophile attacking sites of the title molecule is identified using MEP surface plot study. Molecular docking results predicted the anti-leishmanic activity for the compound.
Collapse
Affiliation(s)
- C Yohannan Panicker
- Department of Physics, TKM College of Arts and Science, Kollam, Kerala, India.
| | | | - Prakash S Nayak
- Department of Studies in Chemistry, Mangalore University, Mangalagangotri, Karanataka, India
| | - B Narayana
- Department of Studies in Chemistry, Mangalore University, Mangalagangotri, Karanataka, India
| | - B K Sarojini
- Industrial Chemistry-Division, Department of Studies in Chemistry, Mangalore University, Mangalagangotri, Karanataka, India
| | - H K Fun
- X-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, Penang 11800 Malaysia; Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P.O. Box 2457, Riyadh 11451, Saudi Arabia
| | - Javeed Ahamad War
- Department of Chemistry, Dr.H.S.Gour Central University, Sagar, M.P., India
| | - S K Srivastava
- Department of Chemistry, Dr.H.S.Gour Central University, Sagar, M.P., India
| | - C Van Alsenoy
- University of Antwerp, Chemistry Department, Universiteitsplein 1, B2610 Antwerp, Belgium
| |
Collapse
|
9
|
Al-Omary FAM, Raj A, Raju K, Panicker CY, Haress NG, El-Emam AA, El-Ashmawy MB, Al-Saadi AA, Van Alsenoy C, War JA. Spectroscopic investigation (FT-IR, FT-Raman), HOMO-LUMO, NBO analysis and molecular docking study of 2-[(4-chlorobenzyl)sulfanyl]-4-(2-methylpropyl)-6-[3-trifluoromethyl)-anilino]pyrimidine-5-carbonitrile, a potential chemotherapeutic agent. SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 136 Pt B:520-33. [PMID: 25448953 DOI: 10.1016/j.saa.2014.09.066] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2014] [Revised: 08/28/2014] [Accepted: 09/18/2014] [Indexed: 11/30/2022]
Abstract
FT-IR and FT-Raman spectra of 2-[(4-chlorobenzyl)sulfanyl]-4-(2-methylpropyl)-6-[3-trifluoromethyl)-anilino]pyrimidine-5-carbonitrile were recorded and analyzed. The vibrational wave numbers were computed using DFT quantum chemical calculations. The data obtained from wave number calculations are used to assign vibrational bands obtained in infrared and Raman spectra. Potential energy distribution was done using GAR2PED program. The NH stretching wave number is red shifted by 102 cm(-1) in IR from the computed wave number, which indicates the weakening of the NH bond. The geometrical parameters (DFT) of the title compound are in agreement with the XRD results. NBO analysis, HOMO-LUMO, first hyperpolarizability and molecular electrostatic potential results are also reported. From the MEP map it is evident that the negative electrostatic potential regions are mainly localized over the CN and CF3 groups and are possible sites for electrophilic attack and positive regions are localized around NH group, indicating possible sites for nucleophilic attack. The preliminary docking results suggest that the title compound might exhibit inhibitory activity against GPb and may act as a potential anti-diabetic compound.
Collapse
Affiliation(s)
- Fatmah A M Al-Omary
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia
| | - Asha Raj
- Department of Physics, University College, Trivandrum, Kerala, India
| | - K Raju
- Department of Physics, University College, Trivandrum, Kerala, India
| | - C Yohannan Panicker
- Department of Physics, TKM College of Arts and Science, Kollam, Kerala, India.
| | - Nadia G Haress
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia
| | - Ali A El-Emam
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia
| | - Mahmoud B El-Ashmawy
- Department of Medicinal Chemistry, Faculty of Pharmacy, University of Mansoura, Mansoura 35516, Egypt
| | - Abdulaziz A Al-Saadi
- Department of Chemistry, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
| | - Christian Van Alsenoy
- University of Antwerp, Chemistry Department, Universiteitsplein 1, B2610 Antwerp, Belgium
| | - Javeed Ahmad War
- Department of Chemistry, Dr. H.S. Gour Central University, Sagar, M.P., India
| |
Collapse
|
10
|
Khan I, Ibrar A, Hameed S, White JM, Simpson J. Crystal structure of 2-(4-chloro-phen-yl)-2-oxoethyl 3-bromo-benzoate. Acta Crystallogr Sect E Struct Rep Online 2014; 70:301-4. [PMID: 25484728 PMCID: PMC4257351 DOI: 10.1107/s1600536814021643] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2014] [Accepted: 10/01/2014] [Indexed: 11/10/2022]
Abstract
2-(4-Chloro-phen-yl)-2-oxoethyl 3-bromo-benzoate, C15H10BrClO3, was synthesized in a single-step reaction by condensation of 3-bromo-benzoic acid with 2-bromo-1-(4-chloro-phen-yl)ethanone in di-methyl-formamide in the presence of tri-ethyl-amine as a catalyst. The structure consists of an aryl ketone moiety linked to an aryl ester unit by a methyl-ene group. Both units are reasonably planar (r.m.s. deviations of 0.119 and 0.010 Å for the aryl ketone and aryl ester units, respectively) and are almost orthogonal, with an angle of 88.60 (3)° between them. In the crystal, mol-ecules form five separate sets of inversion dimers. Three of these are generated by two C-H⋯O inter-actions and a C-H⋯Br contact, and form chains along c and along the ab cell diagonal. In addition, two inversion-related π-π stacking inter-actions between like aryl rings again form chains of mol-ecules but in this instance along the bc diagonal. These contacts generate infinite layers of mol-ecules parallel to (011) and stack the mol-ecules along the a-axis direction.
Collapse
Affiliation(s)
- Imtiaz Khan
- Department of Chemistry, Quaid-i-Azam University, Islamabad 45320, Pakistan ; School of Chemistry, University of Nottingham, University Park, Nottingham NG7 2RD, England
| | - Aliya Ibrar
- Department of Chemistry, Quaid-i-Azam University, Islamabad 45320, Pakistan
| | - Shahid Hameed
- Department of Chemistry, Quaid-i-Azam University, Islamabad 45320, Pakistan
| | - Jonathan M White
- School of Chemistry and Bio-21 Institute, University of Melbourne, Parkville, Victoria 3052, Australia
| | - Jim Simpson
- Department of Chemistry, University of Otago, PO Box 56, Dunedin, New Zealand
| |
Collapse
|